Diff of the two buildlogs:
--
--- b1/build.log 2024-12-17 14:58:06.687642694 +0000
+++ b2/build.log 2024-12-17 15:02:17.968263335 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Mon Jan 19 09:18:57 -12 2026
-I: pbuilder-time-stamp: 1768857537
+I: Current time: Wed Dec 18 04:58:19 +14 2024
+I: pbuilder-time-stamp: 1734447499
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
@@ -26,54 +26,86 @@
dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/49113/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/34400/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos2-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Dec 17 14:58 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/34400/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/34400/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
- DISTRIBUTION='trixie'
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
+ DIRSTACK=()
+ DISTRIBUTION=trixie
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='b12bf1b91b974d4f9fbdaa1c9c83c99a'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='49113'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=c4c8ca32aaf34755a8f59f83904aaa28
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=34400
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nftTTDI6/pbuilderrc_IgbN --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nftTTDI6/b1 --logfile b1/build.log kalign_3.4.0-1.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://213.165.73.152:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nftTTDI6/pbuilderrc_nJDf --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nftTTDI6/b2 --logfile b2/build.log kalign_3.4.0-1.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://46.16.76.132:3128
I: uname -a
- Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/49113/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/34400/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -167,7 +199,7 @@
Get: 52 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 libsimde-dev all 0.8.2-2 [467 kB]
-Fetched 39.2 MB in 0s (92.8 MB/s)
+Fetched 39.2 MB in 1s (72.1 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libproc2-0:i386.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19952 files and directories currently installed.)
@@ -398,7 +430,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes
+I: user script /srv/workspace/pbuilder/34400/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/34400/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes
dpkg-buildpackage: info: source package kalign
dpkg-buildpackage: info: source version 1:3.4.0-1
dpkg-buildpackage: info: source distribution unstable
@@ -449,7 +485,7 @@
-- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2
-- OpenMP version : 4.5
-- OpenMP flags : -fopenmp
--- Configuring done (1.5s)
+-- Configuring done (6.0s)
-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
@@ -463,7 +499,7 @@
-- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0'
dh_auto_build
- cd obj-i686-linux-gnu && make -j22 "INSTALL=install --strip-program=true" VERBOSE=1
+ cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu//CMakeFiles/progress.marks
@@ -471,112 +507,100 @@
make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend
+make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend
+make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend
+make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color="
+make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color="
-make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color="
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color="
-make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 1%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 2%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 5%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build
-[ 6%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o
-[ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o
-[ 8%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o
-[ 9%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o
+[ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
+[ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o
+[ 5%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o
+[ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
+[ 8%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o
+[ 9%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o
+[ 10%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
+[ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+[ 13%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-[ 10%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o
+[ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
-[ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o
-[ 13%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o
+[ 16%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
+[ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
-[ 14%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o
+[ 18%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-[ 17%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o
-[ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o
-[ 18%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o
+[ 20%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
-[ 20%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o
-[ 21%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-[ 22%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
-[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o
+[ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c
-[ 27%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o
+[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c
+[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c
[ 25%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-[ 28%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-[ 29%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
+[ 27%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
+[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c
+[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c
+[ 31%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
+[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c
/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main':
/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable]
58 | float d2;
| ^~
-[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c
-[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o
-[ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c
-[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c
-[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o
-[ 37%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c
-[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c
-[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o
+[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
-[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o
+[ 35%] Linking C executable edist_utest
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1
+/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm
+[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
-[ 43%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
-[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c
-[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
@@ -584,8 +608,13 @@
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
+[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c
+[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c
+[ 39%] Built target edist_utest
+[ 40%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
@@ -593,190 +622,197 @@
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 48%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o
+[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
+[ 43%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
-[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o
+[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
-[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o
+[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c
-[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o
-[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o
+[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c
+[ 48%] Linking C executable task_utest
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1
+[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c
-[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o
+/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 50%] Built target task_utest
+[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o
+[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o
+[ 55%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c
-[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o
-[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o
+[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c
-[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o
+[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c
-[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o
+[ 58%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
+[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c
-[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c
-[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o
+[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c
-[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c
-[ 66%] Linking C static library libtldevel.a
+[ 62%] Linking C static library libtldevel.a
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake
+[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1
/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
/usr/bin/ranlib libtldevel.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 64%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
+[ 64%] Built target tldevel
+[ 66%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
+[ 67%] Linking C executable alphabet_utest
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1
+[ 68%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
+[ 70%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c
+/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 67%] Linking C executable task_utest
-[ 67%] Built target tldevel
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1
-[ 67%] Built target kalign_OBJ
+[ 70%] Built target alphabet_utest
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 70%] Built target kalign_OBJ
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend
-[ 68%] Linking C executable edist_utest
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color="
-/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm
-/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 70%] Linking C static library libkalign.a
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake
[ 71%] Linking C static library libkalign_static.a
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 72%] Linking C static library libkalign.a
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1
-[ 72%] Linking C executable alphabet_utest
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 72%] Built target task_utest
+/usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
-/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1
-[ 72%] Built target edist_utest
+/usr/bin/ranlib libkalign_static.a
/usr/bin/ranlib libkalign.a
-/usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
-[ 74%] Linking C executable bpm_utest
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 74%] Linking C executable bpm_utest
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-/usr/bin/ranlib libkalign_static.a
-/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm
-[ 74%] Built target alphabet_utest
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1
+[ 74%] Built target kalign_static
[ 74%] Built target kalign
+make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend
+make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend
+make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color="
+/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm
+make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color="
+make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend
+make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color="
-make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color="
-make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color="
+make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color="
-make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build
+make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color="
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build
-make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 77%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o
+[ 75%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o
+[ 78%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color="
+make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c
+[ 79%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build
-[ 74%] Built target kalign_static
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build
-[ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o
+[ 81%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o
+[ 82%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build
-[ 77%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o
-[ 79%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o
-[ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
-[ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build
-[ 81%] Built target bpm_utest
-[ 82%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color="
[ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o
+[ 85%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c
-[ 85%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp
-[ 86%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c
-[ 87%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 89%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c
-[ 90%] Linking C executable kalign_io_test
-[ 91%] Linking C executable kalign_cmp_test
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1
+[ 86%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp
+[ 86%] Built target bpm_utest
+[ 87%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c
+[ 89%] Linking C executable kalign_io_test
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1
-/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
+[ 90%] Linking C executable kalign_cmp_test
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
+/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
+[ 91%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o
[ 93%] Linking C executable kalign_lib_test
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 93%] Built target kalign_cmp_test
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
[ 93%] Built target kalign_io_test
+[ 93%] Built target kalign_cmp_test
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
[ 93%] Built target kalign_lib_test
-[ 94%] Linking C executable kalignfmt
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1
-/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
-[ 95%] Linking C executable kalign
+[ 94%] Linking C executable kalign
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
-[ 95%] Built target kalignfmt
+[ 95%] Linking C executable kalignfmt
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1
+/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
[ 95%] Built target kalign-bin
[ 97%] Linking C executable largebench
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
+[ 97%] Built target kalignfmt
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 97%] Built target largebench
[ 98%] Linking C executable dssim
cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
-[ 98%] Built target largebench
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
[ 98%] Built target dssim
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()':
@@ -801,10 +837,10 @@
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
dh_auto_test
- cd obj-i686-linux-gnu && make -j22 test ARGS\+=--verbose ARGS\+=-j22
+ cd obj-i686-linux-gnu && make -j10 test ARGS\+=--verbose ARGS\+=-j10
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
Running tests...
-/usr/bin/ctest --force-new-ctest-process --verbose -j22
+/usr/bin/ctest --force-new-ctest-process --verbose -j10
UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/DartConfiguration.tcl
Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/DartConfiguration.tcl
UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/DartConfiguration.tcl
@@ -876,20 +912,8 @@
10: Test command: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa"
10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
10: Test timeout computed to be: 1500
-test 11
- Start 11: kalign_itest_BB30014.tfa
-
-11: Test command: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa"
-11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
-11: Test timeout computed to be: 1500
-test 12
- Start 12: DSSIM_takes_a_min
-
-12: Test command: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/dssim
-12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
-12: Test timeout computed to be: 1500
1: LEN: 256
-1: [2026-01-19 21:19:35] : LOG : Testing correctness of serial bpm.
+1: [2024-12-17 14:59:49] : LOG : Testing correctness of serial bpm.
2: LEN: 21
2: @ -1
2: A 0
@@ -1022,68 +1046,150 @@
2: ] -1
2: ^ -1
2: _ -1
-3: [2026-01-19 21:19:35] : LOG : Check for correctness.
-3: [2026-01-19 21:19:35] : LOG : Timing serial
-3: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
-4: 435 958 402 144 278
-4: 857 259 353 281 219
-4: 873 50 977 259 163
-4: 498 815 298 412 962
-4: 858 542 247 900 858
-4: 990 302 364 728 346
-4: 636 475 149 832 935
-4: 329 648 396 773 519
-4: 88 361 859 451 871
-4: 400 569 16 247 630
-4: 68 225 220 110 314
-4: 922 328 889 754 251
-4: 276 788 701 119 489
-4: 880 804 447 822 116
-4: 620 390 104 645 54
-4: 756 943 672 867 685
-4: 430 818 284 216 968
-4: 838 961 436 590 428
-4: 257 38 123 678 836
-4: 700 338 708 190 978
-4: 201 173 520 688 316
-4: 342 277 381 896 167
-4: 716 31 750 665 321
-4: 559 895 193 225 859
-4: 558 837 516 221 673
-4: 799 679 68 398 414
-4: 7 891 242 183 73
-4: 474 279 759 893 109
-4: 62 992 980 14 864
-4: 419 713 423 544 418
-4: 422 515 301 379 71
-4: 205 289 625 465 814
-4: 209 375 937 543 242
-4: 980 446 166 999 205
-4: 281 82 201 871 78
-4: 242 734 835 700 192
-4: 95 216 935 188 970
-4: 288 699 271 779 726
-4: 960 683 346 47 468
-4: 278 495 725 928 378
-4: 355 617 486 535 804
-4: 422 387 953 739 444
-4: 923 657 654 788 235
-4: 212 228 744 489 126
-4: 393 283 186 89 284
-4: 533 997 448 244 858
-4: 530 816 706 7 524
-4: 286 348 667 683 493
-4: 132 383 941 955 215
-4: 948 945 689 88 762
-4: 207 382 124 583 694
-4: 646 103 920 751 220
-4: 348 185 443 356 763
-4: 114 852 298 251 203
+3: [2024-12-17 14:59:49] : LOG : Check for correctness.
+3: [2024-12-17 14:59:49] : LOG : Timing serial
+3: [2024-12-17 14:59:49] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
+4: 863 614 648 882 308
+4: 137 142 244 295 82
+4: 348 402 254 153 699
+4: 785 139 870 201 296
+4: 67 820 532 979 783
+4: 425 943 238 23 88
+4: 657 248 334 709 112
+4: 511 737 988 103 254
+4: 825 855 68 195 925
+4: 294 763 468 426 652
+4: 785 657 823 374 265
+4: 144 462 695 931 96
+4: 563 713 357 847 886
+4: 459 188 636 632 875
+4: 17 627 139 712 577
+4: 387 892 482 396 989
+4: 133 163 163 422 918
+4: 544 347 407 599 230
+4: 126 903 631 608 317
+4: 56 139 750 526 103
+4: 553 452 215 165 357
+4: 7 39 484 47 458
+4: 754 492 958 178 470
+4: 707 13 703 581 544
+4: 368 843 718 7 206
+4: 376 670 450 779 599
+4: 586 2 149 922 583
+4: 198 884 261 345 16
+4: 12 204 41 527 679
+4: 207 992 680 564 790
+4: 710 141 131 311 745
+4: 442 13 345 52 145
+4: 853 143 979 882 255
+4: 722 23 30 973 894
+4: 532 893 943 668 830
+4: 895 252 983 690 953
+4: 207 544 231 484 869
+4: 899 269 101 746 426
+4: 429 748 690 63 732
+4: 60 509 179 463 277
+4: 545 506 961 746 444
+4: 935 86 651 47 786
+4: 6 899 909 425 169
+4: 410 739 672 720 549
+4: 777 408 732 719 818
+4: 346 446 738 643 865
+4: 605 462 462 953 881
+4: 299 651 127 163 684
+4: 672 608 697 50 633
+4: 914 240 319 68 384
+4: 517 603 651 861 634
+4: 302 558 265 712 351
+4: 767 850 703 373 637
+4: 126 641 399 146 200
+ 1/12 Test #2: alphabet_utest ................... Passed 0.02 sec
+ 2/12 Test #3: edist_utest ...................... Passed 0.02 sec
+ 3/12 Test #4: task_utest ....................... Passed 0.02 sec
+test 11
+ Start 11: kalign_itest_BB30014.tfa
+
+11: Test command: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa"
+11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
+11: Test timeout computed to be: 1500
+test 12
+ Start 12: DSSIM_takes_a_min
+
+12: Test command: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/dssim
+12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
+12: Test timeout computed to be: 1500
5: Aligned:
5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE----------
5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
+ 4/12 Test #5: C++Lib ........................... Passed 0.03 sec
+8:
+8: Kalign (3.4.0)
+8:
+8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
+8:
+8: This program comes with ABSOLUTELY NO WARRANTY; for details type:
+8: `kalign -showw'.
+8: This is free software, and you are welcome to redistribute it
+8: under certain conditions; consult the COPYING file for details.
+8:
+8: Please cite:
+8: Lassmann, Timo.
+8: "Kalign 3: multiple sequence alignment of large data sets."
+8: Bioinformatics (2019)
+8: https://doi.org/10.1093/bioinformatics/btz795
+8:
+8: [2024-12-17 14:59:49] : LOG : Detected protein sequences.
+8: [2024-12-17 14:59:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf.
+8: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+8: [2024-12-17 14:59:49] : LOG : Calculating pairwise distances
+8: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+8: [2024-12-17 14:59:49] : LOG : Building guide tree.
+8: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+8: [2024-12-17 14:59:49] : LOG : Aligning
+10:
+10: Kalign (3.4.0)
+10:
+10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
+10:
+10: This program comes with ABSOLUTELY NO WARRANTY; for details type:
+10: `kalign -showw'.
+10: This is free software, and you are welcome to redistribute it
+10: under certain conditions; consult the COPYING file for details.
+10:
+10: Please cite:
+10: Lassmann, Timo.
+10: "Kalign 3: multiple sequence alignment of large data sets."
+10: Bioinformatics (2019)
+10: https://doi.org/10.1093/bioinformatics/btz795
+10:
+10: [2024-12-17 14:59:49] : LOG : Detected protein sequences.
+10: [2024-12-17 14:59:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
+10: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+10: [2024-12-17 14:59:49] : LOG : Calculating pairwise distances
+9:
+9: Kalign (3.4.0)
+9:
+9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
+9:
+9: This program comes with ABSOLUTELY NO WARRANTY; for details type:
+9: `kalign -showw'.
+9: This is free software, and you are welcome to redistribute it
+9: under certain conditions; consult the COPYING file for details.
+9:
+9: Please cite:
+9: Lassmann, Timo.
+9: "Kalign 3: multiple sequence alignment of large data sets."
+9: Bioinformatics (2019)
+9: https://doi.org/10.1093/bioinformatics/btz795
+9:
+9: [2024-12-17 14:59:49] : LOG : Detected protein sequences.
+9: [2024-12-17 14:59:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
+9: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+9: [2024-12-17 14:59:49] : LOG : Calculating pairwise distances
+12: [2024-12-17 14:59:49] : LOG : DSSim - a simplistic sequence simulator.
+12: [2024-12-17 14:59:49] : LOG : Protein alignments - 20 seq
6:
6: Kalign (3.4.0)
6:
@@ -1100,14 +1206,10 @@
6: Bioinformatics (2019)
6: https://doi.org/10.1093/bioinformatics/btz795
6:
-6: [2026-01-19 21:19:35] : LOG : Detected protein sequences.
-6: [2026-01-19 21:19:35] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa.
-6: [2026-01-19 21:19:35] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-6: [2026-01-19 21:19:35] : LOG : Calculating pairwise distances
-6: [2026-01-19 21:19:35] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
-6: [2026-01-19 21:19:35] : LOG : Building guide tree.
-6: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
-6: [2026-01-19 21:19:35] : LOG : Aligning
+6: [2024-12-17 14:59:49] : LOG : Detected protein sequences.
+6: [2024-12-17 14:59:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa.
+6: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+6: [2024-12-17 14:59:49] : LOG : Calculating pairwise distances
7:
7: Kalign (3.4.0)
7:
@@ -1124,52 +1226,11 @@
7: Bioinformatics (2019)
7: https://doi.org/10.1093/bioinformatics/btz795
7:
-7: [2026-01-19 21:19:35] : LOG : Detected protein sequences.
-7: [2026-01-19 21:19:35] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf.
-7: [2026-01-19 21:19:35] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-7: [2026-01-19 21:19:35] : LOG : Calculating pairwise distances
-7: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
-7: [2026-01-19 21:19:35] : LOG : Building guide tree.
-7: [2026-01-19 21:19:35] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
-7: [2026-01-19 21:19:35] : LOG : Aligning
-7: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
-7: >1aab_
-7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
-7: KFEDMAKADKARYEREMKTYIPPKGE----------
-7: >1j46_A
-7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
-7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
-7: >1k99_A
-7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
-7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
-7: >2lef_A
-7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
-7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
-8:
-8: Kalign (3.4.0)
-8:
-8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
-8:
-8: This program comes with ABSOLUTELY NO WARRANTY; for details type:
-8: `kalign -showw'.
-8: This is free software, and you are welcome to redistribute it
-8: under certain conditions; consult the COPYING file for details.
-8:
-8: Please cite:
-8: Lassmann, Timo.
-8: "Kalign 3: multiple sequence alignment of large data sets."
-8: Bioinformatics (2019)
-8: https://doi.org/10.1093/bioinformatics/btz795
-8:
-8: [2026-01-19 21:19:35] : LOG : Detected protein sequences.
-8: [2026-01-19 21:19:35] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf.
-8: [2026-01-19 21:19:35] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-8: [2026-01-19 21:19:35] : LOG : Calculating pairwise distances
-8: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
-8: [2026-01-19 21:19:35] : LOG : Building guide tree.
-8: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
-8: [2026-01-19 21:19:35] : LOG : Aligning
-8: [2026-01-19 21:19:35] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
+7: [2024-12-17 14:59:49] : LOG : Detected protein sequences.
+7: [2024-12-17 14:59:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf.
+7: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+7: [2024-12-17 14:59:49] : LOG : Calculating pairwise distances
+8: [2024-12-17 14:59:49] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00
8: >1al2_ad
8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
@@ -1194,54 +1255,6 @@
8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
8: Q----
-9:
-9: Kalign (3.4.0)
-9:
-9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
-9:
-9: This program comes with ABSOLUTELY NO WARRANTY; for details type:
-9: `kalign -showw'.
-9: This is free software, and you are welcome to redistribute it
-9: under certain conditions; consult the COPYING file for details.
-9:
-9: Please cite:
-9: Lassmann, Timo.
-9: "Kalign 3: multiple sequence alignment of large data sets."
-9: Bioinformatics (2019)
-9: https://doi.org/10.1093/bioinformatics/btz795
-9:
-9: [2026-01-19 21:19:35] : LOG : Detected protein sequences.
-9: [2026-01-19 21:19:35] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
-9: [2026-01-19 21:19:35] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-9: [2026-01-19 21:19:35] : LOG : Calculating pairwise distances
-9: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
-9: [2026-01-19 21:19:35] : LOG : Building guide tree.
-9: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
-9: [2026-01-19 21:19:35] : LOG : Aligning
-10:
-10: Kalign (3.4.0)
-10:
-10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
-10:
-10: This program comes with ABSOLUTELY NO WARRANTY; for details type:
-10: `kalign -showw'.
-10: This is free software, and you are welcome to redistribute it
-10: under certain conditions; consult the COPYING file for details.
-10:
-10: Please cite:
-10: Lassmann, Timo.
-10: "Kalign 3: multiple sequence alignment of large data sets."
-10: Bioinformatics (2019)
-10: https://doi.org/10.1093/bioinformatics/btz795
-10:
-10: [2026-01-19 21:19:35] : LOG : Detected protein sequences.
-10: [2026-01-19 21:19:35] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
-10: [2026-01-19 21:19:35] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-10: [2026-01-19 21:19:35] : LOG : Calculating pairwise distances
-10: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
-10: [2026-01-19 21:19:35] : LOG : Building guide tree.
-10: [2026-01-19 21:19:35] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
-10: [2026-01-19 21:19:35] : LOG : Aligning
11:
11: Kalign (3.4.0)
11:
@@ -1258,59 +1271,26 @@
11: Bioinformatics (2019)
11: https://doi.org/10.1093/bioinformatics/btz795
11:
-11: [2026-01-19 21:19:35] : LOG : Detected protein sequences.
-11: [2026-01-19 21:19:35] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa.
-11: [2026-01-19 21:19:35] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-11: [2026-01-19 21:19:35] : LOG : Calculating pairwise distances
-12: [2026-01-19 21:19:35] : LOG : DSSim - a simplistic sequence simulator.
-12: [2026-01-19 21:19:35] : LOG : Protein alignments - 20 seq
- 1/12 Test #2: alphabet_utest ................... Passed 0.06 sec
- 2/12 Test #3: edist_utest ...................... Passed 0.06 sec
- 3/12 Test #4: task_utest ....................... Passed 0.06 sec
- 4/12 Test #5: C++Lib ........................... Passed 0.05 sec
+11: [2024-12-17 14:59:49] : LOG : Detected protein sequences.
+11: [2024-12-17 14:59:49] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa.
+11: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+11: [2024-12-17 14:59:49] : LOG : Calculating pairwise distances
+10: [2024-12-17 14:59:49] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00
+10: [2024-12-17 14:59:49] : LOG : Building guide tree.
5/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.05 sec
-6: [2026-01-19 21:19:35] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
-6: >1aab_
-6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
-6: KFEDMAKADKARYEREMKTYIPPKGE----------
-6: >1j46_A
-6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
-6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
-6: >1k99_A
-6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
-6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
-6: >2lef_A
-6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
-6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
- 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.06 sec
- 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.05 sec
-9: [2026-01-19 21:19:35] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
-9: >1al2_ad
-9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
-9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
-9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
-9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
-9: KA---
-9: >1bbt_ac
-9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
-9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
-9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
-9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
-9: -----
-9: >1bev_ac
-9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
-9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
-9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
-9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
-9: TAILQ
-9: >1mec_ac
-9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
-9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
-9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
-9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
-9: Q----
- 8/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.05 sec
-10: [2026-01-19 21:19:35] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
+9: [2024-12-17 14:59:49] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
+9: [2024-12-17 14:59:49] : LOG : Building guide tree.
+10: [2024-12-17 14:59:49] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
+10: [2024-12-17 14:59:49] : LOG : Aligning
+9: [2024-12-17 14:59:49] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
+9: [2024-12-17 14:59:49] : LOG : Aligning
+6: [2024-12-17 14:59:49] : LOG : CPU Time: 0.06u 00:00:00.06 Elapsed: 00:00:00.00
+6: [2024-12-17 14:59:49] : LOG : Building guide tree.
+7: [2024-12-17 14:59:49] : LOG : CPU Time: 0.06u 00:00:00.05 Elapsed: 00:00:00.00
+7: [2024-12-17 14:59:49] : LOG : Building guide tree.
+6: [2024-12-17 14:59:49] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
+6: [2024-12-17 14:59:49] : LOG : Aligning
+10: [2024-12-17 14:59:49] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00
10: >1al2_ad
10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
@@ -1335,12 +1315,68 @@
10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
10: Q----
- 9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.05 sec
-11: [2026-01-19 21:19:35] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00
-11: [2026-01-19 21:19:35] : LOG : Building guide tree.
-11: [2026-01-19 21:19:35] : LOG : CPU Time: 0.06u 00:00:00.06 Elapsed: 00:00:00.00
-11: [2026-01-19 21:19:35] : LOG : Aligning
-11: [2026-01-19 21:19:35] : LOG : CPU Time: 0.10u 00:00:00.09 Elapsed: 00:00:00.00
+9: [2024-12-17 14:59:49] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00
+9: >1al2_ad
+9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
+9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
+9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
+9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
+9: KA---
+9: >1bbt_ac
+9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
+9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
+9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
+9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
+9: -----
+9: >1bev_ac
+9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
+9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
+9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
+9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
+9: TAILQ
+9: >1mec_ac
+9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
+9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
+9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
+9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
+9: Q----
+11: [2024-12-17 14:59:49] : LOG : CPU Time: 0.06u 00:00:00.05 Elapsed: 00:00:00.00
+11: [2024-12-17 14:59:49] : LOG : Building guide tree.
+7: [2024-12-17 14:59:49] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00
+7: [2024-12-17 14:59:49] : LOG : Aligning
+6: [2024-12-17 14:59:49] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
+ 6/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.08 sec
+6: >1aab_
+6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
+6: KFEDMAKADKARYEREMKTYIPPKGE----------
+6: >1j46_A
+6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
+6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
+6: >1k99_A
+6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
+6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
+6: >2lef_A
+6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
+6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
+7: [2024-12-17 14:59:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+7: >1aab_
+7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
+7: KFEDMAKADKARYEREMKTYIPPKGE----------
+7: >1j46_A
+7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
+7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
+7: >1k99_A
+7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
+7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
+7: >2lef_A
+7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
+7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
+ 7/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.09 sec
+ 8/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.09 sec
+ 9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.08 sec
+11: [2024-12-17 14:59:49] : LOG : CPU Time: 0.10u 00:00:00.10 Elapsed: 00:00:00.00
+11: [2024-12-17 14:59:49] : LOG : Aligning
+11: [2024-12-17 14:59:49] : LOG : CPU Time: 0.15u 00:00:00.15 Elapsed: 00:00:00.00
11: >1ags_A
11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG
11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
@@ -1655,40 +1691,40 @@
1: 0 0 0 0
1: 0 0 0 0
1:
-1: [2026-01-19 21:19:35] : LOG : Testing correctness of AVX bpm.
+1: [2024-12-17 14:59:49] : LOG : Testing correctness of AVX bpm.
+12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
+12: [2024-12-17 14:59:58] : LOG : Protein alignments - 1000 seq
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1:
1: Dyn AVX DYN/AVX
-1: [2026-01-19 21:19:45] : LOG : Timing DYN 256
-1: [2026-01-19 21:19:48] : LOG : 2.589821 - dyn
-1: [2026-01-19 21:19:48] : LOG : 0.000000 - bpm
-1: [2026-01-19 21:19:48] : LOG : 0.212753 - bpm_block2
-1: [2026-01-19 21:19:48] : LOG : 0.234984 - bpm_block
-11/12 Test #1: bpm_utest ........................ Passed 12.97 sec
-12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
-12: [2026-01-19 21:20:01] : LOG : Protein alignments - 1000 seq
+1: [2024-12-17 14:59:58] : LOG : Timing DYN 256
+1: [2024-12-17 15:00:02] : LOG : 2.638667 - dyn
+1: [2024-12-17 15:00:02] : LOG : 0.000000 - bpm
+1: [2024-12-17 15:00:02] : LOG : 0.262721 - bpm_block2
+1: [2024-12-17 15:00:02] : LOG : 0.285276 - bpm_block
+11/12 Test #1: bpm_utest ........................ Passed 12.76 sec
12:
[ ] 0%
[===== ] 10%
[========== ] 20%
[=============== ] 30%
[==================== ] 40%
[========================= ] 50%
[============================== ] 60%
[=================================== ] 70%
[======================================== ] 80%
[============================================= ] 90%
[==================================================] 100%
-12: [2026-01-19 21:20:19] : LOG : Protein alignments - 10000 seq
+12: [2024-12-17 15:00:26] : LOG : Protein alignments - 10000 seq
12:
[ ] 0%
[========================= ] 50%
[==================================================] 100%
-12: [2026-01-19 21:20:35] : LOG : DNA alignments - 20 seq
+12: [2024-12-17 15:00:45] : LOG : DNA alignments - 20 seq
12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
-12: [2026-01-19 21:20:41] : LOG : DNA alignments - 1000 seq
+12: [2024-12-17 15:01:05] : LOG : DNA alignments - 1000 seq
12:
[ ] 0%
[===== ] 10%
[========== ] 20%
[=============== ] 30%
[==================== ] 40%
[========================= ] 50%
[============================== ] 60%
[=================================== ] 70%
[======================================== ] 80%
[============================================= ] 90%
[==================================================] 100%
-12: [2026-01-19 21:20:48] : LOG : DNA alignments - 10000 seq
+12: [2024-12-17 15:01:21] : LOG : DNA alignments - 10000 seq
12:
[ ] 0%
[========================= ] 50%
[==================================================] 100%
-12/12 Test #12: DSSIM_takes_a_min ................ Passed 79.74 sec
+12/12 Test #12: DSSIM_takes_a_min ................ Passed 101.63 sec
100% tests passed, 0 tests failed out of 12
-Total Test time (real) = 79.79 sec
+Total Test time (real) = 101.77 sec
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/kalign/
- cd obj-i686-linux-gnu && make -j22 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+ cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
@@ -1742,12 +1778,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/34400/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/34400/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/49113 and its subdirectories
-I: Current time: Mon Jan 19 09:21:04 -12 2026
-I: pbuilder-time-stamp: 1768857664
+I: removing directory /srv/workspace/pbuilder/34400 and its subdirectories
+I: Current time: Wed Dec 18 05:02:06 +14 2024
+I: pbuilder-time-stamp: 1734447726