Diff of the two buildlogs: -- --- b1/build.log 2024-04-29 09:17:01.108468762 +0000 +++ b2/build.log 2024-04-29 09:21:59.439758824 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 1 03:38:32 -12 2025 -I: pbuilder-time-stamp: 1748792312 +I: Current time: Mon Apr 29 23:17:04 +14 2024 +I: pbuilder-time-stamp: 1714382224 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -33,54 +33,86 @@ dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/44940/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/23739/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 29 09:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/23739/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/23739/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='deb3e71b3eb344fc96cfba40bd225148' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='44940' - PS1='# ' - PS2='> ' + INVOCATION_ID=ddcc314ad7374b598455f50e923d21da + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=23739 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.69e9dKKW/pbuilderrc_9F6N --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.69e9dKKW/b1 --logfile b1/build.log ivar_1.4.2+dfsg-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.69e9dKKW/pbuilderrc_L9WT --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.69e9dKKW/b2 --logfile b2/build.log ivar_1.4.2+dfsg-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/44940/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 21 07:13 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/23739/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -93,7 +125,7 @@ Depends: debhelper-compat (= 13), libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19709 files and directories currently installed.) +(Reading database ... 19885 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -126,40 +158,34 @@ Install the following packages: 2) libbrotli1 [1.1.0-2+b3 (testing)] -3) libcom-err2 [1.47.0-2.4 (testing)] -4) libcurl3t64-gnutls [8.7.1-3 (testing)] -5) libcurl4-gnutls-dev [8.7.1-3 (testing)] -6) libdeflate-dev [1.20-1 (testing)] -7) libdeflate0 [1.20-1 (testing)] -8) libgssapi-krb5-2 [1.20.1-5+b1 (testing)] -9) libhts-dev [1.19+ds-1 (testing)] -10) libhts3 [1.19+ds-1 (testing)] -11) libhtscodecs2 [1.6.0-1+b1 (testing)] -12) libk5crypto3 [1.20.1-5+b1 (testing)] -13) libkeyutils1 [1.6.3-3 (testing)] -14) libkrb5-3 [1.20.1-5+b1 (testing)] -15) libkrb5support0 [1.20.1-5+b1 (testing)] -16) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] -17) liblzma-dev [5.6.1+really5.4.5-1 (testing)] -18) libnghttp2-14 [1.59.0-1 (testing)] -19) libpsl5t64 [0.21.2-1.1 (testing)] -20) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] -21) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] -22) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] -23) libssh2-1t64 [1.11.0-4.1+b2 (testing)] -24) libssl3t64 [3.2.1-3 (testing)] -25) zlib1g-dev [1:1.3.dfsg-3.1 (testing)] +3) libcurl3t64-gnutls [8.7.1-3 (testing)] +4) libcurl4-gnutls-dev [8.7.1-3 (testing)] +5) libdeflate-dev [1.20-1 (testing)] +6) libdeflate0 [1.20-1 (testing)] +7) libhts-dev [1.19+ds-1 (testing)] +8) libhts3 [1.19+ds-1 (testing)] +9) libhtscodecs2 [1.6.0-1+b1 (testing)] +10) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] +11) liblzma-dev [5.6.1+really5.4.5-1 (testing)] +12) libnghttp2-14 [1.59.0-1 (testing)] +13) libpsl5t64 [0.21.2-1.1 (testing)] +14) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] +15) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] +16) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] +17) libssh2-1t64 [1.11.0-4.1+b2 (testing)] +18) libssl3t64 [3.2.1-3 (testing)] +19) zlib1g-dev [1:1.3.dfsg-3.1 (testing)] The following NEW packages will be installed: - autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} + autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages will be REMOVED: libssl3{a} The following packages are RECOMMENDED but will NOT be installed: - ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget -0 packages upgraded, 54 newly installed, 1 to remove and 0 not upgraded. -Need to get 27.8 MB of archives. After unpacking 90.8 MB will be used. + ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget +0 packages upgraded, 48 newly installed, 1 to remove and 0 not upgraded. +Need to get 27.1 MB of archives. After unpacking 88.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libssl3t64 i386 3.2.1-3 [2234 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] @@ -193,42 +219,37 @@ Get: 30 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] -Get: 33 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.0-2.4 [20.6 kB] -Get: 34 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.20.1-5+b1 [35.9 kB] -Get: 35 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.20.1-5+b1 [83.2 kB] -Get: 36 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] -Get: 37 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.20.1-5+b1 [359 kB] -Get: 38 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.20.1-5+b1 [145 kB] -Get: 39 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] -Get: 40 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] -Get: 41 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] -Get: 42 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] -Get: 43 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] -Get: 44 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] -Get: 45 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] -Get: 46 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.7.1-3 [467 kB] -Get: 47 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.7.1-3 [589 kB] -Get: 48 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] -Get: 49 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.20-1 [56.0 kB] -Get: 50 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.0-1+b1 [68.5 kB] -Get: 51 http://deb.debian.org/debian trixie/main i386 libhts3 i386 1.19+ds-1 [490 kB] -Get: 52 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.1+really5.4.5-1 [304 kB] -Get: 53 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] -Get: 54 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.19+ds-1 [1660 kB] -Fetched 27.8 MB in 0s (64.6 MB/s) +Get: 33 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] +Get: 34 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] +Get: 35 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] +Get: 36 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] +Get: 37 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] +Get: 38 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] +Get: 39 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] +Get: 40 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.7.1-3 [467 kB] +Get: 41 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.7.1-3 [589 kB] +Get: 42 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] +Get: 43 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.20-1 [56.0 kB] +Get: 44 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.0-1+b1 [68.5 kB] +Get: 45 http://deb.debian.org/debian trixie/main i386 libhts3 i386 1.19+ds-1 [490 kB] +Get: 46 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.1+really5.4.5-1 [304 kB] +Get: 47 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] +Get: 48 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.19+ds-1 [1660 kB] +Fetched 27.1 MB in 1s (25.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libssl3:i386: dependency problems, but removing anyway as you requested: + libkrb5-3:i386 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19709 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19885 files and directories currently installed.) Removing libssl3:i386 (3.1.5-1) ... Selecting previously unselected package libssl3t64:i386. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19696 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19872 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_i386.deb ... Unpacking libssl3t64:i386 (3.2.1-3) ... Setting up libssl3t64:i386 (3.2.1-3) ... Selecting previously unselected package sensible-utils. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19887 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. @@ -321,75 +342,56 @@ Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../30-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... -Selecting previously unselected package libcom-err2:i386. -Preparing to unpack .../31-libcom-err2_1.47.0-2.4_i386.deb ... -Unpacking libcom-err2:i386 (1.47.0-2.4) ... -Selecting previously unselected package libkrb5support0:i386. -Preparing to unpack .../32-libkrb5support0_1.20.1-5+b1_i386.deb ... -Unpacking libkrb5support0:i386 (1.20.1-5+b1) ... -Selecting previously unselected package libk5crypto3:i386. -Preparing to unpack .../33-libk5crypto3_1.20.1-5+b1_i386.deb ... -Unpacking libk5crypto3:i386 (1.20.1-5+b1) ... -Selecting previously unselected package libkeyutils1:i386. -Preparing to unpack .../34-libkeyutils1_1.6.3-3_i386.deb ... -Unpacking libkeyutils1:i386 (1.6.3-3) ... -Selecting previously unselected package libkrb5-3:i386. -Preparing to unpack .../35-libkrb5-3_1.20.1-5+b1_i386.deb ... -Unpacking libkrb5-3:i386 (1.20.1-5+b1) ... -Selecting previously unselected package libgssapi-krb5-2:i386. -Preparing to unpack .../36-libgssapi-krb5-2_1.20.1-5+b1_i386.deb ... -Unpacking libgssapi-krb5-2:i386 (1.20.1-5+b1) ... Selecting previously unselected package libsasl2-modules-db:i386. -Preparing to unpack .../37-libsasl2-modules-db_2.1.28+dfsg1-4+b1_i386.deb ... +Preparing to unpack .../31-libsasl2-modules-db_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:i386. -Preparing to unpack .../38-libsasl2-2_2.1.28+dfsg1-4+b1_i386.deb ... +Preparing to unpack .../32-libsasl2-2_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:i386. -Preparing to unpack .../39-libldap-2.5-0_2.5.13+dfsg-5+b3_i386.deb ... +Preparing to unpack .../33-libldap-2.5-0_2.5.13+dfsg-5+b3_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:i386. -Preparing to unpack .../40-libnghttp2-14_1.59.0-1_i386.deb ... +Preparing to unpack .../34-libnghttp2-14_1.59.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.59.0-1) ... Selecting previously unselected package libpsl5t64:i386. -Preparing to unpack .../41-libpsl5t64_0.21.2-1.1_i386.deb ... +Preparing to unpack .../35-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. -Preparing to unpack .../42-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... +Preparing to unpack .../36-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. -Preparing to unpack .../43-libssh2-1t64_1.11.0-4.1+b2_i386.deb ... +Preparing to unpack .../37-libssh2-1t64_1.11.0-4.1+b2_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl3t64-gnutls:i386. -Preparing to unpack .../44-libcurl3t64-gnutls_8.7.1-3_i386.deb ... +Preparing to unpack .../38-libcurl3t64-gnutls_8.7.1-3_i386.deb ... Unpacking libcurl3t64-gnutls:i386 (8.7.1-3) ... Selecting previously unselected package libcurl4-gnutls-dev:i386. -Preparing to unpack .../45-libcurl4-gnutls-dev_8.7.1-3_i386.deb ... +Preparing to unpack .../39-libcurl4-gnutls-dev_8.7.1-3_i386.deb ... Unpacking libcurl4-gnutls-dev:i386 (8.7.1-3) ... Selecting previously unselected package libdeflate0:i386. -Preparing to unpack .../46-libdeflate0_1.20-1_i386.deb ... +Preparing to unpack .../40-libdeflate0_1.20-1_i386.deb ... Unpacking libdeflate0:i386 (1.20-1) ... Selecting previously unselected package libdeflate-dev:i386. -Preparing to unpack .../47-libdeflate-dev_1.20-1_i386.deb ... +Preparing to unpack .../41-libdeflate-dev_1.20-1_i386.deb ... Unpacking libdeflate-dev:i386 (1.20-1) ... Selecting previously unselected package libhtscodecs2:i386. -Preparing to unpack .../48-libhtscodecs2_1.6.0-1+b1_i386.deb ... +Preparing to unpack .../42-libhtscodecs2_1.6.0-1+b1_i386.deb ... Unpacking libhtscodecs2:i386 (1.6.0-1+b1) ... Selecting previously unselected package libhts3:i386. -Preparing to unpack .../49-libhts3_1.19+ds-1_i386.deb ... +Preparing to unpack .../43-libhts3_1.19+ds-1_i386.deb ... Unpacking libhts3:i386 (1.19+ds-1) ... Selecting previously unselected package liblzma-dev:i386. -Preparing to unpack .../50-liblzma-dev_5.6.1+really5.4.5-1_i386.deb ... +Preparing to unpack .../44-liblzma-dev_5.6.1+really5.4.5-1_i386.deb ... Unpacking liblzma-dev:i386 (5.6.1+really5.4.5-1) ... Selecting previously unselected package zlib1g-dev:i386. -Preparing to unpack .../51-zlib1g-dev_1%3a1.3.dfsg-3.1_i386.deb ... +Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg-3.1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Selecting previously unselected package libhts-dev:i386. -Preparing to unpack .../52-libhts-dev_1.19+ds-1_i386.deb ... +Preparing to unpack .../46-libhts-dev_1.19+ds-1_i386.deb ... Unpacking libhts-dev:i386 (1.19+ds-1) ... Setting up libhtscodecs2:i386 (1.6.0-1+b1) ... Setting up libpipeline1:i386 (1.5.7-2) ... -Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... @@ -402,15 +404,12 @@ Setting up libdeflate0:i386 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... -Setting up libcom-err2:i386 (1.47.0-2.4) ... Setting up file (1:5.45-2+b1) ... Setting up libelf1t64:i386 (0.191-1+b1) ... -Setting up libkrb5support0:i386 (1.20.1-5+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up autopoint (0.21-14) ... -Setting up libk5crypto3:i386 (1.20.1-5+b1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:i386 (5.6.1+really5.4.5-1) ... @@ -419,7 +418,6 @@ Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... -Setting up libkrb5-3:i386 (1.20.1-5+b1) ... Setting up libssh2-1t64:i386 (1.11.0-4.1+b2) ... Setting up libdeflate-dev:i386 (1.20-1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... @@ -431,7 +429,6 @@ Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... -Setting up libgssapi-krb5-2:i386 (1.20.1-5+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... @@ -452,7 +449,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ivar-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.2+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/23739/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/23739/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ivar-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ivar_1.4.2+dfsg-3_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -536,19 +537,13 @@ config.status: creating config.h config.status: executing depfiles commands dh_auto_build - make -j22 + make -j10 make[1]: Entering directory '/build/reproducible-path/ivar-1.4.2+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ivar-1.4.2+dfsg' Making all in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp Using built-in specs. COLLECT_GCC=g++ Target: i686-linux-gnu @@ -556,110 +551,92 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp -Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccNE0xTr.s -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp -COLLECT_GCC=g++ -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccrroDHP.s Using built-in specs. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cclc2Rz3.s COLLECT_GCC=g++ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccDdBSEK.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" +ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" +#include "..." search starts here: +#include <...> search starts here: + . + .. + /usr/include/c++/13 + /usr/include/i386-linux-gnu/c++/13 + /usr/include/c++/13/backward + /usr/lib/gcc/i686-linux-gnu/13/include + /usr/local/include + /usr/include/i386-linux-gnu + /usr/include +End of search list. Using built-in specs. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cccxAWJw.s -COLLECT_GCC=g++ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -Using built-in specs. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cc2YldmJ.s -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp -COLLECT_GCC=g++ -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' -Using built-in specs. - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccWoJwcm.s COLLECT_GCC=g++ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Target: i686-linux-gnu -Using built-in specs. Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.COLLECT_GCC=g++ - -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -oTarget: i686-linux-gnu - /tmp/cc7KVPSK.sConfigured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --pr -ogram-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapg++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp -=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccmsoEJh.s -Using built-in specs. +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccFYuYb1.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" +ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" +#include "..." search starts here: +#include <...> search starts here: + . + .. + /usr/include/c++/13 + /usr/include/i386-linux-gnu/c++/13 + /usr/include/c++/13/backward + /usr/lib/gcc/i686-linux-gnu/13/include + /usr/local/include + /usr/include/i386-linux-gnu + /usr/include +End of search list. +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC=g++ -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --prUsing built-in specs. -ogram-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccIsKSYe.s -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccLoDZMR.s -COLLECT_GCC=g++ -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccONMOiV.s +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccOxjHAN.s -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) - compiled by GNU C version 13.2.0, ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) - compiled by GNU C version 13.2.0, ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" +ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 #include "..." search starts here: #include <...> search starts here: . @@ -672,14 +649,21 @@ /usr/include/i386-linux-gnu /usr/include End of search list. -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - +Using built-in specs. +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cclGa1kU.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" @@ -696,12 +680,26 @@ /usr/include/i386-linux-gnu /usr/include End of search list. +Using built-in specs. +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cckyBPLz.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" -Using built-in specs. #include "..." search starts here: #include <...> search starts here: . @@ -714,20 +712,28 @@ /usr/include/i386-linux-gnu /usr/include End of search list. -ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" -ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c +Using built-in specs. COLLECT_GCC=g++ -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugsignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" - --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Using built-in specs. +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix -Supported LTO compression algorithms: zlib zstd#include "..." search starts here: +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccTK9Sxo.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" +ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" +#include "..." search starts here: #include <...> search starts here: -gcc version 13.2.0 (Debian 13.2.0-23) . .. /usr/include/c++/13 @@ -738,15 +744,12 @@ /usr/include/i386-linux-gnu /usr/include End of search list. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccf6xcWP.s +Compiler executable checksum: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp +cf2186eed168243ab6582fc4bda94e5c GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -COLLECT_GCC=g++ -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.BugsUsing built-in specs. ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" @@ -764,29 +767,41 @@ /usr/include/i386-linux-gnu /usr/include End of search list. - --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstdCOLLECT_GCC=g++ +Using built-in specs. +COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) - +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccreWjlA.s +Compiler executable checksum: cf2186eed16824g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp +3ab6582fc4bda94e5c +Using built-in specs. +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -versionGNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) - compiled by GNU C version 13.2.0, -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccboPBjf.s -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccvbGIXI.s +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c +Using built-in specs. +COLLECT_GCC=g++ GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) - compiled by GNU C version 13.2.0, COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + compiled by GNU C version 13.2.0, Target: i686-linux-gnu GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cppGGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 - -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccfKSbUI.s +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccxWClPF.s ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" @@ -803,6 +818,10 @@ /usr/include/i386-linux-gnu /usr/include End of search list. +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + +Compiler executable checksum: GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" @@ -823,7 +842,6 @@ GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP -Using built-in specs. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" @@ -842,22 +860,36 @@ /usr/include/i386-linux-gnu /usr/include End of search list. -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) - compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - +cf2186eed168243ab6582fc4bda94e5c +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o get_masked_amplicons.o /tmp/ccxWClPF.s +GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o alignment.o /tmp/ccFYuYb1.s +GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 +MAKEFLAGS=w -j10 +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'alignment.' +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp +Using built-in specs. COLLECT_GCC=g++ -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccG4kbiw.s GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) - compiled by GNU C version 13.2.0, ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" #include "..." search starts here: @@ -871,10 +903,26 @@ /usr/local/include /usr/include/i386-linux-gnu /usr/include -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 End of search list. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccYFaoBC.s +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c +MAKEFLAGS=w -j10 +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'get_masked_amplicons.' +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp +Using built-in specs. +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cc8kSFaK.s +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" @@ -892,32 +940,28 @@ /usr/include/i386-linux-gnu /usr/include End of search list. +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o remove_reads_from_amplicon.o /tmp/cckyBPLz.s +GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 +MAKEFLAGS=w -j10 +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'remove_reads_from_amplicon.' +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp +Using built-in specs. +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccvYpqNf.s GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) - compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - -ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" -ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" -Compiler executable checksum: ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" -cf2186eed1#include "..." search starts here: -6824#include <...> search starts here: -3a . -b6 .. -58 /usr/include/c++/13 -2f /usr/include/i386-linux-gnu/c++/13 -c4 /usr/include/c++/13/backward -bd /usr/lib/gcc/i686-linux-gnu/13/include -a9 /usr/local/include -4e /usr/include/i386-linux-gnu -5c /usr/include - -End of search list. ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" @@ -935,11 +979,28 @@ /usr/include/i386-linux-gnu /usr/include End of search list. +Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o allele_functions.o /tmp/ccvbGIXI.s +GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 +MAKEFLAGS=w -j10 +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'allele_functions.' +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp +Using built-in specs. +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cczpNbBX.s GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" @@ -958,133 +1019,73 @@ /usr/include End of search list. Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c -Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c -Compiler executable checksum: Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c -cf2186eed168243ab6582fc4bda94e5c -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (i686-linux-gnu) - compiled by GNU C version 13.2.0, Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/13" -ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed/i386-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/include-fixed" -Compiler executable checksum: ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/13/../../../../i686-linux-gnu/include" -cf2186eed168#include "..." search starts here: -243a#include <...> search starts here: -b6 . -58 .. -2f /usr/include/c++/13 -c4bd /usr/include/i386-linux-gnu/c++/13 -a9 /usr/include/c++/13/backward -4e /usr/lib/gcc/i686-linux-gnu/13/include -5c /usr/local/include - /usr/include/i386-linux-gnu - - /usr/include -End of search list. -Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c -Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c -Compiler executable checksum: cf2186eed168243ab6582fc4bda94eCompiler executable checksum: 5c -cf2186eed168243ab6582fc4bda94e5c -Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c -Compiler executable checksum: cf2186eed168243ab6582fc4bda94e5c -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o alignment.o /tmp/cccxAWJw.s -GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 -COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'alignment.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o interval_tree.o /tmp/ccYFaoBC.s -GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 -COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'interval_tree.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o get_masked_amplicons.o /tmp/ccOxjHAN.s -GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 -COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'get_masked_amplicons.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o remove_reads_from_amplicon.o /tmp/cc7KVPSK.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o get_common_variants.o /tmp/ccG4kbiw.s GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 -COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'remove_reads_from_amplicon.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o allele_functions.o /tmp/ccIsKSYe.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o suffix_tree.o /tmp/ccONMOiV.s GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o ref_seq.o /tmp/ccboPBjf.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o ivar.o /tmp/ccrroDHP.s GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ref_seq.' -MAKEFLAGS=w -j22 -COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'allele_functions.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'get_common_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o call_variants.o /tmp/ccmsoEJh.s -GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 -COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'call_variants.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o primer_bed.o /tmp/ccLoDZMR.s -GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o ivar.o /tmp/ccNE0xTr.s -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -vGNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 - -I . -I .. --gdwarf-5 --32 -o get_common_variants.o /tmp/ccf6xcWP.s + as -v -I . -I .. --gdwarf-5 --32 -o call_variants.o /tmp/ccTK9Sxo.s GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' -MAKEFLAGS=w -j22 +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'get_common_variants.' -MAKEFLAGS=w -j22 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'call_variants.' +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'primer_bed.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'suffix_tree.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o primer_bed.o /tmp/ccreWjlA.s +GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o call_consensus_pileup.o /tmp/cclc2Rz3.s + as -v -I . -I .. --gdwarf-5 --32 -o call_consensus_pileup.o /tmp/ccDdBSEK.s GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o trim_primer_quality.o /tmp/ccWoJwcm.s + as -v -I . -I .. --gdwarf-5 --32 -o trim_primer_quality.o /tmp/cclGa1kU.s GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o suffix_tree.o /tmp/cc2YldmJ.s +MAKEFLAGS=w -j10 +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'primer_bed.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o interval_tree.o /tmp/cczpNbBX.s GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 +MAKEFLAGS=w -j10 +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'interval_tree.' +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'call_consensus_pileup.' -MAKEFLAGS=w -j22 +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'trim_primer_quality.' -MAKEFLAGS=w -j22 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o ref_seq.o /tmp/ccvYpqNf.s +GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'suffix_tree.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o parse_gff.o /tmp/ccfKSbUI.s + as -v -I . -I .. --gdwarf-5 --32 -o parse_gff.o /tmp/cc8kSFaK.s GNU assembler version 2.42 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -MAKEFLAGS=w -j22 +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'parse_gff.' @@ -1097,11 +1098,11 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) -MAKEFLAGS=w -j22 +MAKEFLAGS=w -j10 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' - /usr/libexec/gcc/i686-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/ccyH5kxR.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/13 -L/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/13/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/13/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/13/crtendS.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crtn.o + /usr/libexec/gcc/i686-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/ccNrJCw5.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/13 -L/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/13/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/13/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/13/crtendS.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' Making all in tests @@ -1222,7 +1223,7 @@ chmod -x /build/reproducible-path/ivar-1.4.2+dfsg/data/primer_pair_test/test_primer_pair.bed make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.2+dfsg' dh_auto_install - make -j22 install DESTDIR=/build/reproducible-path/ivar-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no + make -j10 install DESTDIR=/build/reproducible-path/ivar-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ivar-1.4.2+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' @@ -1235,15 +1236,15 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) -MAKEFLAGS=w -j22 -- DESTDIR=/build/reproducible-path/ivar-1.4.2+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no +MAKEFLAGS=w -j10 -- DESTDIR=/build/reproducible-path/ivar-1.4.2+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/13/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/13/:/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/13/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' - /usr/libexec/gcc/i686-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/cc3XOiuR.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/13 -L/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/13/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/13/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/13/crtendS.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crtn.o + /usr/libexec/gcc/i686-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/cc18EoPA.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/13 -L/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/13/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/13/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/13/crtendS.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' -make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/ivar-1.4.2+dfsg/debian/tmp/usr/bin' +make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c ivar '/build/reproducible-path/ivar-1.4.2+dfsg/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' @@ -1290,12 +1291,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/23739/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/23739/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/44940 and its subdirectories -I: Current time: Sun Jun 1 03:39:59 -12 2025 -I: pbuilder-time-stamp: 1748792399 +I: removing directory /srv/workspace/pbuilder/23739 and its subdirectories +I: Current time: Mon Apr 29 23:21:58 +14 2024 +I: pbuilder-time-stamp: 1714382518