Diff of the two buildlogs: -- --- b1/build.log 2024-12-21 00:09:10.232983259 +0000 +++ b2/build.log 2024-12-21 00:20:25.282092564 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Dec 20 11:47:53 -12 2024 -I: pbuilder-time-stamp: 1734738473 +I: Current time: Fri Jan 23 20:32:13 +14 2026 +I: pbuilder-time-stamp: 1769149933 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,85 @@ dpkg-source: info: applying reproducible_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/53178/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18458/tmp/hooks/D01_modify_environment starting +debug: Running on infom08-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 23 06:32 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18458/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18458/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='c89cffa3ca0440c097480925f5eea4e8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='53178' - PS1='# ' - PS2='> ' + INVOCATION_ID=48e9883ac6e6434ab19e2858f2ec4389 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18458 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xb33dBDd/pbuilderrc_vwGH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xb33dBDd/b1 --logfile b1/build.log infernal_1.1.5-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xb33dBDd/pbuilderrc_560h --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xb33dBDd/b2 --logfile b2/build.log infernal_1.1.5-3.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/53178/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/18458/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -169,7 +200,7 @@ Get: 50 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libperl4-corelibs-perl all 0.005-1 [39.0 kB] -Fetched 27.4 MB in 0s (72.2 MB/s) +Fetched 27.4 MB in 1s (18.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19946 files and directories currently installed.) @@ -360,8 +391,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 20 23:48:25 UTC 2024. -Universal Time is now: Fri Dec 20 23:48:25 UTC 2024. +Local time is now: Fri Jan 23 06:32:42 UTC 2026. +Universal Time is now: Fri Jan 23 06:32:42 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -406,7 +437,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/infernal-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../infernal_1.1.5-3_source.changes +I: user script /srv/workspace/pbuilder/18458/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/18458/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/infernal-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../infernal_1.1.5-3_source.changes dpkg-buildpackage: info: source package infernal dpkg-buildpackage: info: source version 1.1.5-3 dpkg-buildpackage: info: source distribution unstable @@ -627,7 +662,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' dh_auto_build -a -- V=1 - make -j11 V=1 + make -j5 V=1 make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5' make -C easel all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' @@ -994,21 +1029,21 @@ make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' dh_auto_test - make -j11 check "TESTSUITEFLAGS=-j11 --verbose" VERBOSE=1 + make -j5 check "TESTSUITEFLAGS=-j5 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' SUBDIR easel make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' - GEN esl_alphabet_utest GEN easel_utest GEN esl_alloc_utest GEN esl_bitfield_utest - GEN esl_cpu_utest - GEN esl_cluster_utest + GEN esl_alphabet_utest GEN esl_buffer_utest - GEN esl_distance_utest - GEN esl_dsqdata_utest + GEN esl_cluster_utest + GEN esl_cpu_utest GEN esl_dirichlet_utest + GEN esl_distance_utest GEN esl_dmatrix_utest + GEN esl_dsqdata_utest GEN esl_exponential_utest GEN esl_fileparser_utest GEN esl_gamma_utest @@ -1084,15 +1119,15 @@ make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/src' SUBDIR impl_sse CC itest_brute.o - GEN generic_fwdback_utest GEN build_utest - GEN generic_viterbi_utest - GEN generic_fwdback_chk_utest + GEN generic_fwdback_utest GEN generic_msv_utest - GEN modelconfig_utest + GEN generic_fwdback_chk_utest + GEN generic_stotrace_utest + GEN generic_viterbi_utest GEN hmmer_utest GEN logsum_utest - GEN generic_stotrace_utest + GEN modelconfig_utest GEN seqmodel_utest GEN p7_alidisplay_utest GEN p7_bg_utest @@ -1100,25 +1135,25 @@ GEN p7_gmx_utest GEN p7_gmxchk_utest GEN p7_hit_utest - GEN p7_hmm_utest GEN p7_hmmd_search_stats_utest + GEN p7_hmm_utest GEN p7_hmmfile_utest GEN p7_profile_utest GEN p7_tophits_utest GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest - GEN itest_brute GEN hmmd_search_status_utest + GEN itest_brute SUBDIR impl_sse make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/src/impl_sse' GEN io_utest - GEN optacc_utest - GEN stotrace_utest GEN decoding_utest + GEN null2_utest GEN msvfilter_utest GEN fwdback_utest - GEN null2_utest + GEN optacc_utest + GEN stotrace_utest GEN vitfilter_utest make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/src/impl_sse' make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/src' @@ -1237,8 +1272,8 @@ System information: -Fri Dec 20 11:50:53 -12 2024 -Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux +Fri Jan 23 20:34:16 +14 2026 +Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel/testsuite' make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel' SUBDIR hmmer/testsuite @@ -1558,8 +1593,8 @@ System information: -Fri Dec 20 11:51:24 -12 2024 -Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux +Fri Jan 23 20:34:36 +14 2026 +Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/testsuite' SUBDIR testsuite make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/testsuite' @@ -1741,15 +1776,15 @@ System information: -Fri Dec 20 12:07:51 -12 2024 -Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux +Fri Jan 23 20:42:52 +14 2026 +Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/testsuite' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' -/usr/bin/make install -j13 AM_UPDATE_INFO_DIR=no V=1 prefix=/build/reproducible-path/infernal-1.1.5/debian/tmp +/usr/bin/make install -j8 AM_UPDATE_INFO_DIR=no V=1 prefix=/build/reproducible-path/infernal-1.1.5/debian/tmp make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5' /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/bin /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/share/man/man1 @@ -1823,8 +1858,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'infernal-doc' in '../infernal-doc_1.1.5-3_all.deb'. dpkg-deb: building package 'infernal-dbgsym' in '../infernal-dbgsym_1.1.5-3_i386.deb'. +dpkg-deb: building package 'infernal-doc' in '../infernal-doc_1.1.5-3_all.deb'. dpkg-deb: building package 'infernal' in '../infernal_1.1.5-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../infernal_1.1.5-3_i386.buildinfo dpkg-genchanges --build=binary -O../infernal_1.1.5-3_i386.changes @@ -1833,12 +1868,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/18458/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18458/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/53178 and its subdirectories -I: Current time: Fri Dec 20 12:09:09 -12 2024 -I: pbuilder-time-stamp: 1734739749 +I: removing directory /srv/workspace/pbuilder/18458 and its subdirectories +I: Current time: Fri Jan 23 20:43:23 +14 2026 +I: pbuilder-time-stamp: 1769150603