Diff of the two buildlogs: -- --- b1/build.log 2024-12-05 10:49:06.099961201 +0000 +++ b2/build.log 2024-12-05 10:57:38.272735887 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 4 22:46:52 -12 2024 -I: pbuilder-time-stamp: 1733395612 +I: Current time: Thu Jan 8 07:12:17 +14 2026 +I: pbuilder-time-stamp: 1767805937 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,54 +31,86 @@ dpkg-source: info: applying set-zlib-after-setting-default-libs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/36440/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18115/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 7 17:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18115/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18115/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='7645e963e2e542ad97fe5241f39050b9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='36440' - PS1='# ' - PS2='> ' + INVOCATION_ID=76cc0f8c5ce943aa9244ccbcc26a0603 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18115 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/pbuilderrc_XD0J --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/b1 --logfile b1/build.log hyphy_2.5.63+dfsg-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/pbuilderrc_KnAs --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/b2 --logfile b2/build.log hyphy_2.5.63+dfsg-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/36440/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/18115/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -268,7 +300,7 @@ Get: 134 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.7-3 [505 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.12.6-1 [26.1 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.12.6-1 [1068 B] -Fetched 88.8 MB in 1s (74.0 MB/s) +Fetched 88.8 MB in 9s (10.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) @@ -719,8 +751,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Dec 5 10:47:25 UTC 2024. -Universal Time is now: Thu Dec 5 10:47:25 UTC 2024. +Local time is now: Wed Jan 7 17:15:16 UTC 2026. +Universal Time is now: Wed Jan 7 17:15:16 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -844,7 +876,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/hyphy-2.5.63+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hyphy_2.5.63+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/18115/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/18115/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/hyphy-2.5.63+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hyphy_2.5.63+dfsg-1_source.changes dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.5.63+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -902,7 +938,7 @@ -- Found MPI_CXX: /usr/lib/i386-linux-gnu/mpich/lib/libmpichcxx.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -fopenmp --- Configuring done (3.4s) +-- Configuring done (6.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -923,7 +959,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg' dh_auto_build -- MP MPI - cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 + cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.63+dfsg -B/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP @@ -938,59 +974,59 @@ make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/build make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu' -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o [ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o +[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o +[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o [ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/batchlan.cpp.o -[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx_iterator.cpp.o +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx_iterator.cpp.o [ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistxl.cpp.o -[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -MF CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/associative_list.cpp -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -MF CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/_hyExecutionContext.cpp -[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/baseobj.cpp.o +[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o [ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistxl_iterator.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -MF CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/_hyExecutionContext.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -MF CMakeFiles/hyphy.dir/src/core/alignment.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/alignment.cpp +[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/baseobj.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -MF CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/associative_list.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -MF CMakeFiles/hyphy.dir/src/core/avllist.cpp.o.d -o 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-D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/batchlanhelpers.cpp.o -MF CMakeFiles/hyphy.dir/src/core/batchlanhelpers.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/batchlanhelpers.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/batchlanhelpers.cpp -[ 15%] Building CXX object CMakeFiles/hyphy.dir/src/core/batchlanruntime.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/dataset.cpp.o -MF CMakeFiles/hyphy.dir/src/core/dataset.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/dataset.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/dataset.cpp -[ 25%] Building CXX object CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o -MF CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/dataset_filter.cpp -[ 25%] Building CXX object CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o /usr/bin/c++ 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-D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -MF CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/formula_parsing_context.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/formula.cpp.o -MF CMakeFiles/hyphy.dir/src/core/formula.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/formula.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/formula.cpp -[ 30%] Building CXX object CMakeFiles/hyphy.dir/src/core/fstring.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/fstring.cpp.o -MF CMakeFiles/hyphy.dir/src/core/fstring.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/fstring.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/fstring.cpp +[ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o -MF CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/hbl_env.cpp [ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o -MF CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/global_object_lists.cpp [ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/global_things.cpp.o +[ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/fstring.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/fstring.cpp.o -MF CMakeFiles/hyphy.dir/src/core/fstring.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/fstring.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/fstring.cpp +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o -MF CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/global_object_lists.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/global_things.cpp.o -MF CMakeFiles/hyphy.dir/src/core/global_things.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/global_things.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/global_things.cpp -[ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 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-ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -MF CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/formula_parsing_context.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/hyFile.cpp.o -MF CMakeFiles/hyphy.dir/src/core/hyFile.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/hyFile.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/hyFile.cpp [ 40%] Building CXX object CMakeFiles/hyphy.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include 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-I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/batchlan.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link 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-I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/batchlanhelpers.cpp -[ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/batchlanruntime.cpp -[ 20%] Building CXX object 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CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/calcnode.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/category.cpp -[ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/constant.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/dataset.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/dataset.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/dataset_filter.cpp +[ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/constant.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/dataset_filter_numeric.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o @@ -1148,8 +1184,8 @@ [ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/global_object_lists.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/global_things.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/hbl_env.cpp @@ -1159,15 +1195,15 @@ /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/likefunc.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/likefunc2.cpp -[ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o +[ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o +[ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o +[ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o +[ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o +[ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/likefuncocl.cpp -[ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/list.cpp -[ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/mathobj.cpp -[ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/matrix.cpp -[ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/matrix_mult.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/nexus.cpp @@ -1208,8 +1244,8 @@ [ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/trie.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o -[ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/trie_iterator.cpp +[ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/variable.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/variablecontainer.cpp @@ -1224,8 +1260,8 @@ [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/new/bgm2.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/new/scfg.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/new/scfg.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/utils/hyphyunixutils.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib/mersenne_twister.cpp @@ -1260,8 +1296,8 @@ -executable \ -exec cp -v '{}' . \; 'obj-i686-linux-gnu/HYPHYMP' -> './HYPHYMP' -'obj-i686-linux-gnu/hyphy' -> './hyphy' 'obj-i686-linux-gnu/HYPHYMPI' -> './HYPHYMPI' +'obj-i686-linux-gnu/hyphy' -> './hyphy' ./run_unit_tests.sh ./tests/hbltests/UnitTests/HBLCommands/Abs.bf ./tests/hbltests/UnitTests/HBLCommands/Add.bf @@ -1370,7 +1406,7 @@ dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/hyphy-2.5.63\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/hyphy-2.5.63\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.63+dfsg -B/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1381,485 +1417,485 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NucModelCompare.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/UpperBound.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/error-filter.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonModelCompare.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-joint-fitter.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ModelTest.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DirectionalREL.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LEISR.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/all-terms.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MSS.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrix2dict_aux.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MSS.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR-MutSel.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR-MutSel.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/random.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf --- 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/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignShared.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relrateBootstrap.bf +-- 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/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LEISR.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGIvL.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf +-- Installing: 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/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relrateBootstrap.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NucModelCompare.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/binomial.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/T3P --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LHT.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ModelTest.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanStopCodons.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/error-filter.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod --- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf +-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector.bf -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/bin/hyphy -- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set non-toolchain portion of runtime path of "/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" @@ -1913,11 +1949,11 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.63+dfsg-1_i386.deb'. -dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.63+dfsg-1_i386.deb'. dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.63+dfsg-1_i386.deb'. -dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.63+dfsg-1_i386.deb'. dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.5.63+dfsg-1_all.deb'. +dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.63+dfsg-1_i386.deb'. +dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.63+dfsg-1_i386.deb'. +dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.63+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../hyphy_2.5.63+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../hyphy_2.5.63+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1925,12 +1961,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/18115/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18115/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/36440 and its subdirectories -I: Current time: Wed Dec 4 22:49:05 -12 2024 -I: pbuilder-time-stamp: 1733395745 +I: removing directory /srv/workspace/pbuilder/18115 and its subdirectories +I: Current time: Thu Jan 8 07:20:21 +14 2026 +I: pbuilder-time-stamp: 1767806421