Diff of the two buildlogs: -- --- b1/build.log 2024-04-30 19:33:18.420447770 +0000 +++ b2/build.log 2024-04-30 19:35:24.859066192 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 2 13:54:52 -12 2025 -I: pbuilder-time-stamp: 1748915692 +I: Current time: Wed May 1 09:33:20 +14 2024 +I: pbuilder-time-stamp: 1714505600 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,86 @@ dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/44558/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/42760/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 30 19:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/42760/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/42760/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='a262f2ffe71a4b3b89ff474872ece056' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='44558' - PS1='# ' - PS2='> ' + INVOCATION_ID=03e4d8a444914007abd995baa2af0f15 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=42760 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ltm7oExd/pbuilderrc_z0Fm --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ltm7oExd/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ltm7oExd/pbuilderrc_sX3n --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ltm7oExd/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/44558/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 21 07:12 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/42760/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -90,7 +122,7 @@ Depends: debhelper-compat (= 13), default-jdk-headless, gradle-debian-helper, libfml-dev, maven-repo-helper, testng dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19709 files and directories currently installed.) +(Reading database ... 19885 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -436,20 +468,21 @@ Get: 162 http://deb.debian.org/debian trixie/main i386 libfml0 i386 0.1+git20190320.b499514-1+b1 [88.3 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Get: 164 http://deb.debian.org/debian trixie/main i386 libfml-dev i386 0.1+git20190320.b499514-1+b1 [100 kB] -Fetched 222 MB in 8s (27.0 MB/s) +Fetched 222 MB in 4s (60.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libssl3:i386: dependency problems, but removing anyway as you requested: + libkrb5-3:i386 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19709 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19885 files and directories currently installed.) Removing libssl3:i386 (3.1.5-1) ... Selecting previously unselected package libssl3t64:i386. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19696 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19872 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_i386.deb ... Unpacking libssl3t64:i386 (3.2.1-3) ... Setting up libssl3t64:i386 (3.2.1-3) ... Selecting previously unselected package sensible-utils. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19887 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. @@ -1307,7 +1340,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/42760/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/42760/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1353,7 +1390,7 @@ dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=22 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=10 jar openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) @@ -1361,12 +1398,12 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.769 secs. -The client will now receive all logging from the daemon (pid: 59820). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-59820.out.log +An attempt to start the daemon took 1.649 secs. +The client will now receive all logging from the daemon (pid: 50567). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-50567.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 22 worker leases. +Using 10 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@435958 Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@435958 Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@e385d5 @@ -1394,18 +1431,18 @@ Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@e385d5 Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@bf3420 Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@417a8a -:compileJava (Thread[Task worker for ':' Thread 5,5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.004 secs. -Up-to-date check for task ':compileJava' took 0.014 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.007 secs. +Up-to-date check for task ':compileJava' took 0.036 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.849 secs. -:buildFermiLib (Thread[Task worker for ':' Thread 5,5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 1.717 secs. +:buildFermiLib (Thread[Task worker for ':',5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Up-to-date check for task ':buildFermiLib' took 0.002 secs. It is not up-to-date because: +Up-to-date check for task ':buildFermiLib' took 0.012 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-17-openjdk-i386 -> /usr/lib/jvm/java-17-openjdk-i386 as JAVA_HOME Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make @@ -1414,33 +1451,33 @@ gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-i386/include -I/usr/lib/jvm/java-17-openjdk-i386/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/i386-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' -:buildFermiLib (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.353 secs. -:processResources (Thread[Task worker for ':' Thread 5,5,main]) started. +:buildFermiLib (Thread[Task worker for ':',5,main]) completed. Took 1.176 secs. +:processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. -:classes (Thread[Task worker for ':' Thread 5,5,main]) started. +:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.008 secs. +:classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. -:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) started. +:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:debianMavenPom (Thread[Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom -:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.071 secs. -:jar (Thread[Task worker for ':' Thread 5,5,main]) started. +:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.146 secs. +:jar (Thread[Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.003 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.007 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.035 secs. +:jar (Thread[Task worker for ':',5,main]) completed. Took 0.078 secs. -BUILD SUCCESSFUL in 5s +BUILD SUCCESSFUL in 13s 4 actionable tasks: 4 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' @@ -1448,7 +1485,7 @@ LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=22 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=10 test openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) @@ -1456,12 +1493,12 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.7 secs. -The client will now receive all logging from the daemon (pid: 60845). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-60845.out.log +An attempt to start the daemon took 1.542 secs. +The client will now receive all logging from the daemon (pid: 53104). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-53104.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 22 worker leases. +Using 10 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b5d74 Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b5d74 Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@b8f934 @@ -1478,55 +1515,55 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b5855 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@c68159 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@b8f934 -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@15e2c95 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d37213 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@799769 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a1bc35 :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.003 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.022 secs). +Putting task artifact state for task ':compileJava' into context took 0.036 secs. +Skipping task ':compileJava' as it is up-to-date (took 0.102 secs). :compileJava UP-TO-DATE -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.049 secs. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.235 secs. :buildFermiLib (Thread[Task worker for ':',5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Skipping task ':buildFermiLib' as it is up-to-date (took 0.002 secs). +Skipping task ':buildFermiLib' as it is up-to-date (took 0.03 secs). :buildFermiLib UP-TO-DATE -:buildFermiLib (Thread[Task worker for ':',5,main]) completed. Took 0.004 secs. +:buildFermiLib (Thread[Task worker for ':',5,main]) completed. Took 0.076 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.025 secs. :classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:classes (Thread[Task worker for ':',5,main]) completed. Took 0.002 secs. :compileTestJava (Thread[Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@ad2281 +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ae55b3 Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian -Up-to-date check for task ':compileTestJava' took 0.457 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 2.04 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 1.097 secs. +:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 5.174 secs. :processTestResources (Thread[Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.004 secs. :testClasses (Thread[Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. @@ -1534,9 +1571,9 @@ :test (Thread[Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. -Up-to-date check for task ':test' took 0.057 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 0.164 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath15818183100859700165txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath9006538846454937906txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. @@ -1545,12 +1582,12 @@ WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.008 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test +Finished generating test XML results (0.064 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.016 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test -:test (Thread[Task worker for ':',5,main]) completed. Took 1.075 secs. +Finished generating test html results (0.101 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test +:test (Thread[Task worker for ':',5,main]) completed. Took 3.952 secs. -BUILD SUCCESSFUL in 6s +BUILD SUCCESSFUL in 19s 4 actionable tasks: 2 executed, 2 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' create-stamp debian/debhelper-build-stamp @@ -1575,9 +1612,9 @@ dpkg-gencontrol: warning: Depends field of package libgatk-fermilite-java: substitution variable ${java:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb'. dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'. dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb'. +dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1585,12 +1622,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/42760/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/42760/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/44558 and its subdirectories -I: Current time: Mon Jun 2 13:56:17 -12 2025 -I: pbuilder-time-stamp: 1748915777 +I: removing directory /srv/workspace/pbuilder/42760 and its subdirectories +I: Current time: Wed May 1 09:35:24 +14 2024 +I: pbuilder-time-stamp: 1714505724