Diff of the two buildlogs: -- --- b1/build.log 2024-04-09 01:06:38.780030049 +0000 +++ b2/build.log 2024-04-09 01:07:39.841435558 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 11 19:28:56 -12 2025 -I: pbuilder-time-stamp: 1747034936 +I: Current time: Tue Apr 9 15:06:41 +14 2024 +I: pbuilder-time-stamp: 1712624801 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,54 +34,86 @@ dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/33277/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/47227/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 9 01:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/47227/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/47227/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='8578bd5e892f4cf68e90ea434dc73e13' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='33277' - PS1='# ' - PS2='> ' + INVOCATION_ID=04670b78cf9644b4994573cc18cff6d0 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=47227 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A9q3yd3h/pbuilderrc_wvGr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A9q3yd3h/b1 --logfile b1/build.log ea-utils_1.1.2+dfsg-9.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A9q3yd3h/pbuilderrc_WQyw --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A9q3yd3h/b2 --logfile b2/build.log ea-utils_1.1.2+dfsg-9.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos16-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 9 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/33277/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 7 11:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/47227/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -161,7 +193,7 @@ Get: 34 http://deb.debian.org/debian trixie/main i386 libgsl27 i386 2.7.1+dfsg-6+b1 [920 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libgsl-dev i386 2.7.1+dfsg-6+b1 [1169 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libsparsehash-dev all 2.0.3-2 [76.8 kB] -Fetched 22.6 MB in 0s (90.3 MB/s) +Fetched 22.6 MB in 0s (52.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19875 files and directories currently installed.) @@ -320,7 +352,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes +I: user script /srv/workspace/pbuilder/47227/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/47227/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable @@ -330,7 +366,7 @@ debian/rules clean dh clean dh_auto_clean - make -j22 clean + make -j7 clean make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' @@ -341,7 +377,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j22 "INSTALL=install --strip-program=true" + make -j7 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now @@ -394,6 +430,13 @@ fastq-multx.c:554:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ +fastq-mcf.c: In function 'int main(int, char**)': +fastq-mcf.c:633:65: warning: too many arguments for format [-Wformat-extra-args] + 633 | fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +fastq-mcf.c:849:56: warning: too many arguments for format [-Wformat-extra-args] + 849 | fprintf(fstat, ", warning end was not reliable\n", ad[a].id, ad[a].seq); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tidx/tidx-lib.cpp: In member function 'void tidx::dump(FILE*)': tidx/tidx-lib.cpp:267:40: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 267 | fprintf(fh, "%s\t%d\t%d\t%ld\t%ld\n", it->first.c_str(), van[i].beg, van[i].end, van[i].pos.size(), van[i].pos[0]); @@ -414,13 +457,6 @@ | | | | long int std::vector::size_type {aka unsigned int} | %d -fastq-mcf.c: In function 'int main(int, char**)': -fastq-mcf.c:633:65: warning: too many arguments for format [-Wformat-extra-args] - 633 | fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -fastq-mcf.c:849:56: warning: too many arguments for format [-Wformat-extra-args] - 849 | fprintf(fstat, ", warning end was not reliable\n", ad[a].id, ad[a].seq); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c: In function 'bool arg_int_pair(const char*, int&, int&)': fastq-mcf.c:1657:6: warning: control reaches end of non-void function [-Wreturn-type] 1657 | b=atoi(strchr(optarg, ',')+1); @@ -445,7 +481,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' - make -j22 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr + make -j7 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mkdir -p /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper @@ -491,12 +527,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/47227/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/47227/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/33277 and its subdirectories -I: Current time: Sun May 11 19:29:34 -12 2025 -I: pbuilder-time-stamp: 1747034974 +I: removing directory /srv/workspace/pbuilder/47227 and its subdirectories +I: Current time: Tue Apr 9 15:07:39 +14 2024 +I: pbuilder-time-stamp: 1712624859