Diff of the two buildlogs: -- --- b1/build.log 2024-10-24 21:19:56.466969432 +0000 +++ b2/build.log 2024-10-24 21:20:44.737261192 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 24 09:17:20 -12 2024 -I: pbuilder-time-stamp: 1729804640 +I: Current time: Thu Nov 27 17:42:56 +14 2025 +I: pbuilder-time-stamp: 1764214976 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -42,53 +42,85 @@ dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/8392/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/28882/tmp/hooks/D01_modify_environment starting +debug: Running on infom08-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 27 03:43 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/28882/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/28882/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='04dbc3bc9cc24269bd1e7fbc9de08455' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='8392' - PS1='# ' - PS2='> ' + INVOCATION_ID=c3b47ed17d224a239e03f3a0ec71f6b1 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=28882 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.t4fzb8t5/pbuilderrc_mFhY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.t4fzb8t5/b1 --logfile b1/build.log biosquid_1.9g+cvs20050121-15.1.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.t4fzb8t5/pbuilderrc_oHVF --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.t4fzb8t5/b2 --logfile b2/build.log biosquid_1.9g+cvs20050121-15.1.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom07-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/8392/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/28882/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -101,7 +133,7 @@ Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19932 files and directories currently installed.) +(Reading database ... 21867 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -156,10 +188,10 @@ Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] -Fetched 20.1 MB in 4s (5014 kB/s) +Fetched 20.1 MB in 0s (86.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21867 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. @@ -291,7 +323,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes +I: user script /srv/workspace/pbuilder/28882/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/28882/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-15.1 dpkg-buildpackage: info: source distribution unstable @@ -394,8 +430,8 @@ checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes -checking whether UID '1111' is supported by ustar format... yes -checking whether GID '1111' is supported by ustar format... yes +checking whether UID '2222' is supported by ustar format... yes +checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc @@ -516,24 +552,20 @@ squidconf.h make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_auto_build - make -j6 + make -j5 make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o afetch_main.o afetch_main.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c file.c: In function 'EnvFileOpen': file.c:240:26: warning: '%s' directive writing up to 1022 bytes into a region of size between 1 and 1023 [-Wformat-overflow=] 240 | sprintf(full, "%s%c%s", s, DIRSLASH, fname); @@ -549,71 +581,73 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -o libsquid_la-file.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-msa.lo `test -f 'msa.c' || echo './'`msa.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-msf.lo `test -f 'msf.c' || echo './'`msf.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o 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--mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o +libtool: compile: gcc -DHAVE_CONFIG_H 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-ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-stockholm.lo `test -f 'stockholm.c' || echo './'`stockholm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-vectorops.lo `test -f 'vectorops.c' || echo './'`vectorops.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -o libsquid_la-types.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-cluster.lo `test -f 'cluster.c' || echo './'`cluster.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dayhoff.lo `test -f 'dayhoff.c' || echo './'`dayhoff.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -o libsquid_la-types.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-aligneval.lo `test -f 'aligneval.c' || echo './'`aligneval.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-cluster.lo `test -f 'cluster.c' || echo './'`cluster.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -fPIC -DPIC -o .libs/libsquid_la-cluster.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dayhoff.lo `test -f 'dayhoff.c' || echo './'`dayhoff.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-iupac.lo `test -f 'iupac.c' || echo './'`iupac.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-revcomp.lo `test -f 'revcomp.c' || echo './'`revcomp.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-rk.lo `test -f 'rk.c' || echo './'`rk.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o dirichlet.c: In function 'AllocDirichlet': dirichlet.c:375:3: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 375 | strcpy(d->alphabet, alphabet); @@ -621,45 +655,47 @@ dirichlet.c:374:17: note: destination object of size [0, 2147483645] allocated by 'malloc' 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash 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-DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-iupac.lo `test -f 'iupac.c' || echo './'`iupac.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -o libsquid_la-eps.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-shuffle.lo `test -f 'shuffle.c' || echo './'`shuffle.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o -gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alistat_main.o alistat_main.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o +gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alistat_main.o alistat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aligneval.o aligneval.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cluster.o cluster.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_math.o sre_math.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_stack.o sre_stack.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compalign_main.o compalign_main.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compstruct_main.o compstruct_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o wuss.o wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp_main.o revcomp_main.c @@ -677,39 +713,39 @@ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight_main.o weight_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight.o weight.c -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/i386-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/i386-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration 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-Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration 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revcomp.o shuffle.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration 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-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log @@ -718,7 +754,7 @@ chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* ln -s .libs/libsquid.a dh_auto_test - make -j6 check "TESTSUITEFLAGS=-j6 --verbose" VERBOSE=1 + make -j5 check "TESTSUITEFLAGS=-j5 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' (cd Testsuite; make CC="gcc" CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security") make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' @@ -735,9 +771,9 @@ (cd Testsuite; make check) make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. -fgets(): 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:01 -sre_fgets(): 0.12u 0.04s 00:00:00.15 Elapsed: 00:00:00 -ReadSeq(): 0.28u 0.02s 00:00:00.30 Elapsed: 00:00:01 +fgets(): 0.06u 0.02s 00:00:00.07 Elapsed: 00:00:00 +sre_fgets(): 0.08u 0.02s 00:00:00.10 Elapsed: 00:00:00 +ReadSeq(): 0.18u 0.04s 00:00:00.21 Elapsed: 00:00:00 iospeed: ok rand(): 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00 sre_random(): 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00 @@ -752,7 +788,7 @@ bug-1-sfetch-path sfetch/SSI path bug ... ok. make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' - rm -fr -- /tmp/dh-xdg-rundir-X9KcSfmL + rm -fr -- /tmp/dh-xdg-rundir-caj8aRPQ cd Testsuite && make clean make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' rm -f *.o *~ Makefile.bak core iospeed rndspeed TAGS gmon.out sqdconfig @@ -768,7 +804,7 @@ make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu' - /bin/bash ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu' + /bin/sh ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) @@ -778,7 +814,7 @@ libtool: install: ranlib /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' + /bin/sh ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/afetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' @@ -871,12 +907,12 @@ install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs + install -m0755 -d debian/biosquid/usr/share/doc/biosquid + install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/.debhelper/generated/libsquid1t64/dh_installchangelogs.dch.trimmed debian/libsquid1t64/usr/share/doc/libsquid1t64/changelog.Debian install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -p -m0644 debian/.debhelper/generated/libsquid-dev/dh_installchangelogs.dch.trimmed debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian - install -m0755 -d debian/biosquid/usr/share/doc/biosquid - install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' @@ -885,7 +921,7 @@ cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean -/bin/sh: 1: cd: can't cd to /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite +/bin/sh: line 1: cd: /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite: No such file or directory make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "libsquid.la" || rm -f libsquid.la @@ -911,20 +947,20 @@ install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/weight.1 debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/compalign.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/revcomp.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/stranslate.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 - mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 - chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 - mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 - chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 + mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 + chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 + mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 + chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done @@ -940,37 +976,37 @@ ln -s libsquid.so.1.0.0 debian/libsquid-dev/usr/lib/i386-linux-gnu/libsquid.so dh_strip_nondeterminism dh_compress - cd debian/libsquid1t64 cd debian/biosquid + cd debian/libsquid1t64 cd debian/libsquid-dev + chmod a-x usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/libsquid-dev/changelog.Debian + gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 - gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' - chmod a-x usr/share/doc/libsquid1t64/changelog.Debian + gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' - gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_fixperms find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid1t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libsquid1t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/libsquid1t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 @@ -980,79 +1016,79 @@ chmod 0644 -- debian/biosquid/usr/lib/debug/.dwz/i386-linux-gnu/biosquid.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/i386-linux-gnu/libsquid.a + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0d + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0d/39ede4ff3306bd31c69379665a7ba661113f0c.debug install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/e5/d745392a65fe75ccb1344c3a7422aec166b46b.debug - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f8 - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f8/bf12e32a12e33bdf2f4989668cec4bce001944.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f8/bf12e32a12e33bdf2f4989668cec4bce001944.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f8/bf12e32a12e33bdf2f4989668cec4bce001944.debug debian/biosquid/usr/bin/shuffle + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0d/39ede4ff3306bd31c69379665a7ba661113f0c.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0d/39ede4ff3306bd31c69379665a7ba661113f0c.debug debian/biosquid/usr/bin/sreformat + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/92 + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/92/88b4565106cd43cedf04e77cbc8773684eb047.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/92/88b4565106cd43cedf04e77cbc8773684eb047.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/92/88b4565106cd43cedf04e77cbc8773684eb047.debug debian/biosquid/usr/bin/sfetch + chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/e5/d745392a65fe75ccb1344c3a7422aec166b46b.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2 + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/221f40e5660d1796d581780b51964100dfcdfa.debug + objcopy --add-gnu-debuglink debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/e5/d745392a65fe75ccb1344c3a7422aec166b46b.debug debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/221f40e5660d1796d581780b51964100dfcdfa.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/221f40e5660d1796d581780b51964100dfcdfa.debug debian/biosquid/usr/bin/revcomp + install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc + ln -s libsquid1t64 debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc/libsquid1t64-dbgsym + install -m0755 -d debian/.debhelper/libsquid1t64 install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/6400d81d16414fb77b68c687e4aae58346fe6d.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/6400d81d16414fb77b68c687e4aae58346fe6d.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/6400d81d16414fb77b68c687e4aae58346fe6d.debug debian/biosquid/usr/bin/compalign - chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/e5/d745392a65fe75ccb1344c3a7422aec166b46b.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 - objcopy --add-gnu-debuglink debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/e5/d745392a65fe75ccb1344c3a7422aec166b46b.debug debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/67 + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/67/10b0fdb3d45537a9f10632606d304770b3978a.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/67/10b0fdb3d45537a9f10632606d304770b3978a.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/67/10b0fdb3d45537a9f10632606d304770b3978a.debug debian/biosquid/usr/bin/seqsplit install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bd/bffaa09447c4ac586b27d658421c4b35f80cfd.debug - install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc - ln -s libsquid1t64 debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc/libsquid1t64-dbgsym - install -m0755 -d debian/.debhelper/libsquid1t64 chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bd/bffaa09447c4ac586b27d658421c4b35f80cfd.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bd/bffaa09447c4ac586b27d658421c4b35f80cfd.debug debian/biosquid/usr/bin/weight - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2 - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/221f40e5660d1796d581780b51964100dfcdfa.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/221f40e5660d1796d581780b51964100dfcdfa.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/221f40e5660d1796d581780b51964100dfcdfa.debug debian/biosquid/usr/bin/revcomp - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8c - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8c/7ceeef073b7824a42e1d588838de8712aa3980.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8c/7ceeef073b7824a42e1d588838de8712aa3980.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8c/7ceeef073b7824a42e1d588838de8712aa3980.debug debian/biosquid/usr/bin/stranslate - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/92 - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/92/88b4565106cd43cedf04e77cbc8773684eb047.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/92/88b4565106cd43cedf04e77cbc8773684eb047.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/92/88b4565106cd43cedf04e77cbc8773684eb047.debug debian/biosquid/usr/bin/sfetch - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0d - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0d/39ede4ff3306bd31c69379665a7ba661113f0c.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0d/39ede4ff3306bd31c69379665a7ba661113f0c.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0d/39ede4ff3306bd31c69379665a7ba661113f0c.debug debian/biosquid/usr/bin/sreformat - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c5 - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c5/f2ec8608783e26ad08de03410dea220115777c.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c5/f2ec8608783e26ad08de03410dea220115777c.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c5/f2ec8608783e26ad08de03410dea220115777c.debug debian/biosquid/usr/bin/alistat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ce/12fd3ae923515a39847e1ffe3a4e6e064bb152.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ce/12fd3ae923515a39847e1ffe3a4e6e064bb152.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ce/12fd3ae923515a39847e1ffe3a4e6e064bb152.debug debian/biosquid/usr/bin/seqstat - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7c - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7c/71d8b937cdd6a406cff31effc41b72f4daf12f.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7c/71d8b937cdd6a406cff31effc41b72f4daf12f.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7c/71d8b937cdd6a406cff31effc41b72f4daf12f.debug debian/biosquid/usr/bin/afetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/99/d4567818567ab9911c546e00f6a67429d8e2df.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/99/d4567818567ab9911c546e00f6a67429d8e2df.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/99/d4567818567ab9911c546e00f6a67429d8e2df.debug debian/biosquid/usr/bin/compstruct - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/67 - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/67/10b0fdb3d45537a9f10632606d304770b3978a.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/67/10b0fdb3d45537a9f10632606d304770b3978a.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/67/10b0fdb3d45537a9f10632606d304770b3978a.debug debian/biosquid/usr/bin/seqsplit install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7e objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7e/de7e05ee62de45f71216dc59639fca7ca971dc.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7e/de7e05ee62de45f71216dc59639fca7ca971dc.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7e/de7e05ee62de45f71216dc59639fca7ca971dc.debug debian/biosquid/usr/bin/sindex + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8c + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8c/7ceeef073b7824a42e1d588838de8712aa3980.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8c/7ceeef073b7824a42e1d588838de8712aa3980.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8c/7ceeef073b7824a42e1d588838de8712aa3980.debug debian/biosquid/usr/bin/stranslate + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f8 + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f8/bf12e32a12e33bdf2f4989668cec4bce001944.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f8/bf12e32a12e33bdf2f4989668cec4bce001944.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f8/bf12e32a12e33bdf2f4989668cec4bce001944.debug debian/biosquid/usr/bin/shuffle + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7c + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7c/71d8b937cdd6a406cff31effc41b72f4daf12f.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7c/71d8b937cdd6a406cff31effc41b72f4daf12f.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/7c/71d8b937cdd6a406cff31effc41b72f4daf12f.debug debian/biosquid/usr/bin/afetch + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c5 + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c5/f2ec8608783e26ad08de03410dea220115777c.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c5/f2ec8608783e26ad08de03410dea220115777c.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/c5/f2ec8608783e26ad08de03410dea220115777c.debug debian/biosquid/usr/bin/alistat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz @@ -1073,12 +1109,12 @@ install -m0755 -d debian/libsquid1t64/DEBIAN dpkg-shlibdeps -Tdebian/libsquid1t64.substvars debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/DEBIAN - dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/sindex + dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1t64/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN @@ -1099,9 +1135,9 @@ echo misc:Pre-Depends= >> debian/biosquid.substvars install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=biosquid-dbgsym "-DDepends=biosquid (= \${binary:Version})" "-DDescription=debug symbols for biosquid" "-DBuild-Ids=0d39ede4ff3306bd31c69379665a7ba661113f0c 6710b0fdb3d45537a9f10632606d304770b3978a 7c71d8b937cdd6a406cff31effc41b72f4daf12f 7ede7e05ee62de45f71216dc59639fca7ca971dc 8b6400d81d16414fb77b68c687e4aae58346fe6d 8c7ceeef073b7824a42e1d588838de8712aa3980 9288b4565106cd43cedf04e77cbc8773684eb047 99d4567818567ab9911c546e00f6a67429d8e2df bdbffaa09447c4ac586b27d658421c4b35f80cfd c5f2ec8608783e26ad08de03410dea220115777c ce12fd3ae923515a39847e1ffe3a4e6e064bb152 e2221f40e5660d1796d581780b51964100dfcdfa f8bf12e32a12e33bdf2f4989668cec4bce001944" -DSection=debug -UMulti-Arch -UReplaces -UBreaks +dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/libsquid1t64 -dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/biosquid @@ -1109,30 +1145,30 @@ chmod 0644 -- debian/biosquid/DEBIAN/control dh_md5sums install -m0755 -d debian/biosquid/DEBIAN - install -m0755 -d debian/libsquid1t64/DEBIAN install -m0755 -d debian/libsquid-dev/DEBIAN - cd debian/libsquid1t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + install -m0755 -d debian/libsquid1t64/DEBIAN cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libsquid1t64/DEBIAN/md5sums - install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN + cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libsquid1t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/biosquid/DEBIAN/md5sums install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN + chmod 0644 -- debian/libsquid1t64/DEBIAN/md5sums + install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN chmod 0644 -- debian/libsquid-dev/DEBIAN/md5sums - cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/libsquid1t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/libsquid1t64 .. - dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb --root-owner-group --build debian/biosquid .. dpkg-deb --root-owner-group --build debian/.debhelper/biosquid/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/libsquid1t64 .. dpkg-deb --root-owner-group --build debian/.debhelper/libsquid1t64/dbgsym-root .. -dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_i386.deb'. + dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-15.1_i386.deb'. -dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-15.1_i386.deb'. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-15.1_i386.deb'. +dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_i386.deb'. +dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-15.1_i386.deb'. dpkg-deb: building package 'libsquid1t64-dbgsym' in '../libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_i386.deb'. dpkg-genbuildinfo --build=binary -O../biosquid_1.9g+cvs20050121-15.1_i386.buildinfo dpkg-genchanges --build=binary -O../biosquid_1.9g+cvs20050121-15.1_i386.changes @@ -1141,12 +1177,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/28882/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/28882/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/8392 and its subdirectories -I: Current time: Thu Oct 24 09:19:55 -12 2024 -I: pbuilder-time-stamp: 1729804795 +I: removing directory /srv/workspace/pbuilder/28882 and its subdirectories +I: Current time: Thu Nov 27 17:43:41 +14 2025 +I: pbuilder-time-stamp: 1764215021