Diff of the two buildlogs: -- --- b1/build.log 2024-06-12 18:56:03.708290376 +0000 +++ b2/build.log 2024-06-12 19:01:26.298576509 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jun 12 06:52:08 -12 2024 -I: pbuilder-time-stamp: 1718218328 +I: Current time: Thu Jun 13 08:56:54 +14 2024 +I: pbuilder-time-stamp: 1718218614 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying use-archive-xopen.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/16263/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11438/tmp/hooks/D01_modify_environment starting +debug: Running on virt64c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 12 18:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11438/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11438/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='0bc5f8d7ed55448aa559244c1d81b037' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='16263' - PS1='# ' - PS2='> ' + INVOCATION_ID=a54ed00d3de54a8bb5c8874dbf23ca54 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11438 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z1fQwUIZ/pbuilderrc_Bk1H --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z1fQwUIZ/b1 --logfile b1/build.log vcfanno_0.3.5+ds-2.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z1fQwUIZ/pbuilderrc_o0JC --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z1fQwUIZ/b2 --logfile b2/build.log vcfanno_0.3.5+ds-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32a 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/16263/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/11438/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -219,7 +251,7 @@ Get: 82 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.5-2 [81.8 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf samtools armhf 1.20-3 [620 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf tabix armhf 1.20+ds-1 [415 kB] -Fetched 109 MB in 2s (48.0 MB/s) +Fetched 109 MB in 3s (35.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19430 files and directories currently installed.) @@ -570,7 +602,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-2_source.changes +I: user script /srv/workspace/pbuilder/11438/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/11438/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-2_source.changes dpkg-buildpackage: info: source package vcfanno dpkg-buildpackage: info: source version 0.3.5+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -593,81 +629,95 @@ dh_autoreconf -O--buildsystem=golang dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang - cd obj-arm-linux-gnueabihf && go install -trimpath -v -p 3 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared -internal/unsafeheader -internal/goarch + cd obj-arm-linux-gnueabihf && go install -trimpath -v -p 4 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared encoding +internal/goarch +internal/unsafeheader internal/cpu -internal/chacha8rand -internal/abi -internal/bytealg internal/coverage/rtcov internal/godebugs +internal/abi +internal/chacha8rand internal/goexperiment internal/goos runtime/internal/math -runtime/internal/atomic runtime/internal/sys +internal/bytealg +runtime/internal/atomic runtime/internal/syscall internal/itoa math/bits unicode/utf8 internal/race -math sync/atomic +math unicode -runtime cmp slices unicode/utf16 log/internal container/list +runtime crypto/internal/alias crypto/internal/boring/sig vendor/golang.org/x/crypto/cryptobyte/asn1 internal/nettrace vendor/golang.org/x/crypto/internal/alias +crypto/subtle internal/reflectlite sync -crypto/subtle internal/testlog -internal/bisect internal/singleflight +internal/bisect runtime/cgo internal/godebug errors sort +math/rand strconv io -reflect internal/oserror syscall -internal/syscall/unix -time internal/safefilepath -internal/syscall/execenv path strings -internal/fmtsort -internal/poll -io/fs +reflect bytes -encoding/binary -os bufio -encoding/base64 -github.com/BurntSushi/toml/internal +internal/syscall/unix +time +internal/syscall/execenv hash hash/crc32 container/heap github.com/brentp/irelate/interfaces regexp/syntax +crypto +crypto/internal/randutil +crypto/internal/nistec/fiat +internal/poll +io/fs +internal/fmtsort +encoding/binary +github.com/BurntSushi/toml/internal +regexp +os +encoding/base64 context +crypto/cipher +crypto/internal/edwards25519/field +crypto/internal/boring fmt io/ioutil -math/rand path/filepath -regexp +crypto/aes +crypto/des +crypto/sha512 +os/exec +crypto/internal/edwards25519 +crypto/internal/nistec +crypto/hmac +crypto/md5 flag encoding/json compress/flate @@ -676,80 +726,66 @@ encoding/csv compress/gzip log +github.com/pkg/errors github.com/biogo/hts/bgzf -github.com/BurntSushi/toml +github.com/yuin/gopher-lua/ast github.com/brentp/vcfgo github.com/biogo/hts/bgzf/index github.com/biogo/hts/csi +github.com/BurntSushi/toml github.com/biogo/hts/internal -github.com/pkg/errors +github.com/yuin/gopher-lua/parse github.com/biogo/hts/tabix github.com/biogo/hts/sam -github.com/yuin/gopher-lua/ast github.com/yuin/gopher-lua/pm -github.com/yuin/gopher-lua/parse -os/exec github.com/klauspost/compress/flate -github.com/biogo/hts/bam github.com/yuin/gopher-lua +math/big +github.com/biogo/hts/bam github.com/brentp/irelate/parsers +github.com/klauspost/pgzip github.com/brentp/bix +crypto/ecdh github.com/brentp/irelate -github.com/klauspost/pgzip -crypto -crypto/cipher -crypto/internal/randutil -math/big -crypto/internal/boring -crypto/aes -crypto/des -crypto/internal/edwards25519/field -crypto/internal/nistec/fiat +crypto/rc4 +crypto/sha1 crypto/rand +crypto/elliptic crypto/internal/bigmod crypto/internal/boring/bbig -github.com/yuin/gluare -crypto/sha512 encoding/asn1 -github.com/brentp/goluaez -vendor/golang.org/x/crypto/cryptobyte -github.com/brentp/vcfanno/api -crypto/internal/nistec -crypto/internal/edwards25519 -crypto/hmac -crypto/md5 -crypto/rc4 -crypto/rsa crypto/ed25519 -crypto/ecdh -crypto/elliptic -crypto/sha1 +crypto/rsa crypto/sha256 crypto/dsa -crypto/x509/pkix -crypto/ecdsa encoding/pem +vendor/golang.org/x/crypto/cryptobyte +crypto/x509/pkix vendor/golang.org/x/net/dns/dnsmessage internal/intern net/netip +crypto/ecdsa +github.com/yuin/gluare vendor/golang.org/x/crypto/chacha20 +github.com/brentp/goluaez vendor/golang.org/x/crypto/internal/poly1305 -vendor/golang.org/x/crypto/chacha20poly1305 +net vendor/golang.org/x/crypto/hkdf +vendor/golang.org/x/crypto/chacha20poly1305 vendor/golang.org/x/text/transform -net vendor/golang.org/x/text/unicode/bidi vendor/golang.org/x/text/unicode/norm +github.com/brentp/vcfanno/api vendor/golang.org/x/text/secure/bidirule vendor/golang.org/x/net/http2/hpack mime mime/quotedprintable -vendor/golang.org/x/net/idna net/http/internal net/http/internal/ascii os/user -net/textproto +vendor/golang.org/x/net/idna vendor/golang.org/x/net/http/httpproxy +net/textproto crypto/x509 vendor/golang.org/x/net/http/httpguts mime/multipart @@ -760,14 +796,14 @@ github.com/brentp/vcfanno/shared github.com/brentp/vcfanno dh_auto_test -O--buildsystem=golang - cd obj-arm-linux-gnueabihf && go test -vet=off -v -p 3 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared + cd obj-arm-linux-gnueabihf && go test -vet=off -v -p 4 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared ? github.com/brentp/vcfanno/shared [no test files] testing: warning: no tests to run PASS -ok github.com/brentp/vcfanno 0.017s [no tests to run] +ok github.com/brentp/vcfanno 0.019s [no tests to run] === RUN Test OK: 13 passed ---- PASS: Test (0.03s) +--- PASS: Test (0.04s) === RUN TestHandleA --- PASS: TestHandleA (0.00s) === RUN TestHandlAMulti @@ -775,7 +811,7 @@ === RUN TestByAlt --- PASS: TestByAlt (0.00s) PASS -ok github.com/brentp/vcfanno/api 0.039s +ok github.com/brentp/vcfanno/api 0.045s create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang @@ -888,12 +924,12 @@ dh_installdeb -O--buildsystem=golang dh_golang -O--buildsystem=golang dh_gencontrol -O--buildsystem=golang -dpkg-gencontrol: warning: Depends field of package vcfanno-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined +dpkg-gencontrol: warning: Depends field of package vcfanno-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=golang dh_builddeb -O--buildsystem=golang -dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-2_armhf.deb'. dpkg-deb: building package 'vcfanno-examples' in '../vcfanno-examples_0.3.5+ds-2_all.deb'. +dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../vcfanno_0.3.5+ds-2_armhf.buildinfo dpkg-genchanges --build=binary -O../vcfanno_0.3.5+ds-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -901,12 +937,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11438/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11438/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/16263 and its subdirectories -I: Current time: Wed Jun 12 06:55:59 -12 2024 -I: pbuilder-time-stamp: 1718218559 +I: removing directory /srv/workspace/pbuilder/11438 and its subdirectories +I: Current time: Thu Jun 13 09:01:21 +14 2024 +I: pbuilder-time-stamp: 1718218881