Diff of the two buildlogs: -- --- b1/build.log 2024-04-13 04:13:25.458038929 +0000 +++ b2/build.log 2024-04-13 04:35:50.216771159 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Apr 12 15:58:24 -12 2024 -I: pbuilder-time-stamp: 1712980704 +I: Current time: Sat Apr 13 18:13:43 +14 2024 +I: pbuilder-time-stamp: 1712981623 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/30813/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/25992/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 13 04:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/25992/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/25992/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='f07365db67fa40afb843fab9aa1b8c96' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='30813' - PS1='# ' - PS2='> ' + INVOCATION_ID=a8a1e82eb5a8429985312e33f730addf + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=25992 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UdqKQEh0/pbuilderrc_BjBE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UdqKQEh0/b1 --logfile b1/build.log twopaco_1.0.0+dfsg-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UdqKQEh0/pbuilderrc_vhPd --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UdqKQEh0/b2 --logfile b2/build.log twopaco_1.0.0+dfsg-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux wbq0 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 12 11:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/30813/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 11 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/25992/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -167,7 +199,7 @@ Get: 52 http://deb.debian.org/debian trixie/main armhf libtbb12 armhf 2021.11.0-2 [73.4 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libtbb-dev armhf 2021.11.0-2 [193 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB] -Fetched 32.3 MB in 3s (12.2 MB/s) +Fetched 32.3 MB in 3s (10.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) @@ -398,7 +430,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/25992/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/25992/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package twopaco dpkg-buildpackage: info: source version 1.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -428,7 +464,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (4.3s) +-- Configuring done (6.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -445,34 +481,38 @@ -- Build files have been written to: /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf dh_auto_build -O--sourcedir=src - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/depend -make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/depend make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/depend cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump/CMakeFiles/graphdump.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor/CMakeFiles/twopaco.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/build make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' +make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/build make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -[ 21%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o +[ 7%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp +[ 14%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp +[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp -[ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -[ 35%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o +[ 28%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp +[ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp +[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp +[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In function ‘void GenerateFastaOutput(const std::string&, const std::vector >&, size_t)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:519:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 519 | std::vector seen(MAX_SEGMENT_NUMBER, 0); @@ -485,14 +525,16 @@ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In instantiation of ‘void GenerateGfaOutput(const std::string&, const std::vector >&, size_t, bool, G) [with G = Gfa2Generator; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:685:21: required from here /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] -[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp +[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp +[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp: In function ‘int main(int, char**)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp:112:25: warning: conversion from ‘long long unsigned int’ to ‘unsigned int’ changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 112 | UINT64_MAX, | ^~~~~~~~~~ -[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp +[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:11: /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: @@ -507,10 +549,6 @@ /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp -[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:4: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const TwoPaCo::JunctionPosition&}; _Tp = TwoPaCo::JunctionPosition; _Alloc = std::allocator]’: @@ -587,6 +625,8 @@ 340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/13/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp /usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, @@ -674,8 +714,8 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp +[ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const EqClass&, const EqClass&)]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘void tbb::detail::d1::quick_sort_body::operator()(const tbb::detail::d1::quick_sort_range&) const [with RandomAccessIterator = __gnu_cxx::__normal_iterator >; Compare = bool(const EqClass&, const EqClass&)]’ at /usr/include/oneapi/tbb/parallel_sort.h:170:18, @@ -728,15 +768,11 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 78%] Linking CXX executable graphdump +[ 92%] Linking CXX executable graphdump cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump -ltbb -lpthread -[ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' -[ 85%] Built target graphdump -[ 92%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp +[ 92%] Built target graphdump In file included from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/set:62, from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp:1: @@ -3271,158 +3307,424 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' obj-*/graphconstructor/twopaco --test -f 34 example/example.fa -ERROR at chr 0 pos 145, 1 != 0 -ERROR at chr 0 pos 169, 1 != 0 -ERROR at chr 0 pos 501, 1 != 0 -ERROR at chr 0 pos 1517, 1 != 0 -ERROR at chr 0 pos 2819, 1 != 0 -ERROR at chr 0 pos 3681, 1 != 0 -ERROR at chr 0 pos 3744, 1 != 0 -ERROR at chr 0 pos 4492, 1 != 0 -ERROR at chr 0 pos 4820, 1 != 0 -ERROR at chr 0 pos 4903, 1 != 0 -ERROR at chr 0 pos 5723, 1 != 0 -ERROR at chr 0 pos 5851, 1 != 0 -ERROR at chr 0 pos 6859, 1 != 0 -ERROR at chr 0 pos 7715, 1 != 0 -ERROR at chr 0 pos 7898, 1 != 0 -ERROR at chr 0 pos 8438, 1 != 0 -ERROR at chr 0 pos 8446, 1 != 0 -ERROR at chr 0 pos 8698, 1 != 0 -ERROR at chr 0 pos 8851, 1 != 0 -ERROR at chr 1 pos 150, 1 != 0 -ERROR at chr 1 pos 174, 1 != 0 -ERROR at chr 1 pos 504, 1 != 0 -ERROR at chr 1 pos 844, 1 != 0 -ERROR at chr 1 pos 1309, 1 != 0 -ERROR at chr 1 pos 1521, 1 != 0 -ERROR at chr 1 pos 2397, 1 != 0 -ERROR at chr 1 pos 2607, 1 != 0 -ERROR at chr 1 pos 2815, 1 != 0 -ERROR at chr 1 pos 3036, 1 != 0 -ERROR at chr 1 pos 3087, 1 != 0 -ERROR at chr 1 pos 3180, 1 != 0 -ERROR at chr 1 pos 3678, 1 != 0 -ERROR at chr 1 pos 4480, 1 != 0 -ERROR at chr 1 pos 4811, 1 != 0 -ERROR at chr 1 pos 4896, 1 != 0 -ERROR at chr 1 pos 5333, 1 != 0 -ERROR at chr 1 pos 5503, 1 != 0 -ERROR at chr 1 pos 5717, 1 != 0 -ERROR at chr 1 pos 5850, 1 != 0 -ERROR at chr 1 pos 6561, 1 != 0 -ERROR at chr 1 pos 6859, 1 != 0 -ERROR at chr 1 pos 7992, 1 != 0 -ERROR at chr 1 pos 8441, 1 != 0 -ERROR at chr 1 pos 8449, 1 != 0 -ERROR at chr 1 pos 8704, 1 != 0 -ERROR at chr 1 pos 8857, 1 != 0 -ERROR at chr 2 pos 171, 1 != 0 -ERROR at chr 2 pos 217, 1 != 0 -ERROR at chr 2 pos 266, 1 != 0 -ERROR at chr 2 pos 476, 1 != 0 -ERROR at chr 2 pos 845, 1 != 0 -ERROR at chr 2 pos 890, 1 != 0 -ERROR at chr 2 pos 1517, 1 != 0 -ERROR at chr 2 pos 2318, 1 != 0 -ERROR at chr 2 pos 2820, 1 != 0 -ERROR at chr 2 pos 3117, 1 != 0 -ERROR at chr 2 pos 3688, 1 != 0 -ERROR at chr 2 pos 3753, 1 != 0 -ERROR at chr 2 pos 4498, 1 != 0 -ERROR at chr 2 pos 4539, 1 != 0 -ERROR at chr 2 pos 4903, 1 != 0 -ERROR at chr 2 pos 5571, 1 != 0 -ERROR at chr 2 pos 5713, 1 != 0 -ERROR at chr 2 pos 5841, 1 != 0 -ERROR at chr 2 pos 5988, 1 != 0 -ERROR at chr 2 pos 6733, 1 != 0 -ERROR at chr 2 pos 6849, 1 != 0 -ERROR at chr 2 pos 7890, 1 != 0 -ERROR at chr 2 pos 7960, 1 != 0 -ERROR at chr 2 pos 8427, 1 != 0 -ERROR at chr 2 pos 8628, 1 != 0 -ERROR at chr 2 pos 8837, 1 != 0 -ERROR at chr 2 pos 8941, 1 != 0 -ERROR at chr 2 pos 8945, 1 != 0 +ERROR at chr 0 pos 232, 1 != 0 +ERROR at chr 0 pos 234, 1 != 0 +ERROR at chr 0 pos 272, 1 != 0 +ERROR at chr 0 pos 345, 1 != 0 +ERROR at chr 0 pos 361, 1 != 0 +ERROR at chr 0 pos 672, 1 != 0 +ERROR at chr 0 pos 732, 1 != 0 +ERROR at chr 0 pos 827, 1 != 0 +ERROR at chr 0 pos 1035, 1 != 0 +ERROR at chr 0 pos 1366, 1 != 0 +ERROR at chr 0 pos 1440, 1 != 0 +ERROR at chr 0 pos 1442, 1 != 0 +ERROR at chr 0 pos 2111, 1 != 0 +ERROR at chr 0 pos 2428, 1 != 0 +ERROR at chr 0 pos 2438, 1 != 0 +ERROR at chr 0 pos 2766, 1 != 0 +ERROR at chr 0 pos 2909, 1 != 0 +ERROR at chr 0 pos 3063, 1 != 0 +ERROR at chr 0 pos 3085, 1 != 0 +ERROR at chr 0 pos 3379, 1 != 0 +ERROR at chr 0 pos 3436, 1 != 0 +ERROR at chr 0 pos 3842, 1 != 0 +ERROR at chr 0 pos 3944, 1 != 0 +ERROR at chr 0 pos 4093, 1 != 0 +ERROR at chr 0 pos 4105, 1 != 0 +ERROR at chr 0 pos 4127, 1 != 0 +ERROR at chr 0 pos 4227, 1 != 0 +ERROR at chr 0 pos 4353, 1 != 0 +ERROR at chr 0 pos 4417, 1 != 0 +ERROR at chr 0 pos 4425, 1 != 0 +ERROR at chr 0 pos 4561, 1 != 0 +ERROR at chr 0 pos 4562, 1 != 0 +ERROR at chr 0 pos 4608, 1 != 0 +ERROR at chr 0 pos 4920, 1 != 0 +ERROR at chr 0 pos 4962, 1 != 0 +ERROR at chr 0 pos 4966, 1 != 0 +ERROR at chr 0 pos 5061, 1 != 0 +ERROR at chr 0 pos 5207, 1 != 0 +ERROR at chr 0 pos 5415, 1 != 0 +ERROR at chr 0 pos 5488, 1 != 0 +ERROR at chr 0 pos 5513, 1 != 0 +ERROR at chr 0 pos 5588, 1 != 0 +ERROR at chr 0 pos 5890, 1 != 0 +ERROR at chr 0 pos 5958, 1 != 0 +ERROR at chr 0 pos 6098, 1 != 0 +ERROR at chr 0 pos 6281, 1 != 0 +ERROR at chr 0 pos 6563, 1 != 0 +ERROR at chr 0 pos 6591, 1 != 0 +ERROR at chr 0 pos 6796, 1 != 0 +ERROR at chr 0 pos 6946, 1 != 0 +ERROR at chr 0 pos 7271, 1 != 0 +ERROR at chr 0 pos 7309, 1 != 0 +ERROR at chr 0 pos 7403, 1 != 0 +ERROR at chr 0 pos 7455, 1 != 0 +ERROR at chr 0 pos 7484, 1 != 0 +ERROR at chr 0 pos 7491, 1 != 0 +ERROR at chr 0 pos 7630, 1 != 0 +ERROR at chr 0 pos 7683, 1 != 0 +ERROR at chr 0 pos 8191, 1 != 0 +ERROR at chr 0 pos 8324, 1 != 0 +ERROR at chr 0 pos 8470, 1 != 0 +ERROR at chr 0 pos 8501, 1 != 0 +ERROR at chr 0 pos 8548, 1 != 0 +ERROR at chr 0 pos 8637, 1 != 0 +ERROR at chr 0 pos 8649, 1 != 0 +ERROR at chr 0 pos 8731, 1 != 0 +ERROR at chr 0 pos 8828, 1 != 0 +ERROR at chr 1 pos 165, 1 != 0 +ERROR at chr 1 pos 229, 1 != 0 +ERROR at chr 1 pos 231, 1 != 0 +ERROR at chr 1 pos 269, 1 != 0 +ERROR at chr 1 pos 311, 1 != 0 +ERROR at chr 1 pos 342, 1 != 0 +ERROR at chr 1 pos 358, 1 != 0 +ERROR at chr 1 pos 629, 1 != 0 +ERROR at chr 1 pos 725, 1 != 0 +ERROR at chr 1 pos 821, 1 != 0 +ERROR at chr 1 pos 1026, 1 != 0 +ERROR at chr 1 pos 1363, 1 != 0 +ERROR at chr 1 pos 1438, 1 != 0 +ERROR at chr 1 pos 1702, 1 != 0 +ERROR at chr 1 pos 2419, 1 != 0 +ERROR at chr 1 pos 2701, 1 != 0 +ERROR at chr 1 pos 2760, 1 != 0 +ERROR at chr 1 pos 2832, 1 != 0 +ERROR at chr 1 pos 2850, 1 != 0 +ERROR at chr 1 pos 2906, 1 != 0 +ERROR at chr 1 pos 3063, 1 != 0 +ERROR at chr 1 pos 3375, 1 != 0 +ERROR at chr 1 pos 3434, 1 != 0 +ERROR at chr 1 pos 3687, 1 != 0 +ERROR at chr 1 pos 3945, 1 != 0 +ERROR at chr 1 pos 4092, 1 != 0 +ERROR at chr 1 pos 4104, 1 != 0 +ERROR at chr 1 pos 4126, 1 != 0 +ERROR at chr 1 pos 4230, 1 != 0 +ERROR at chr 1 pos 4299, 1 != 0 +ERROR at chr 1 pos 4361, 1 != 0 +ERROR at chr 1 pos 4437, 1 != 0 +ERROR at chr 1 pos 4617, 1 != 0 +ERROR at chr 1 pos 4927, 1 != 0 +ERROR at chr 1 pos 4968, 1 != 0 +ERROR at chr 1 pos 4972, 1 != 0 +ERROR at chr 1 pos 5063, 1 != 0 +ERROR at chr 1 pos 5082, 1 != 0 +ERROR at chr 1 pos 5210, 1 != 0 +ERROR at chr 1 pos 5418, 1 != 0 +ERROR at chr 1 pos 5590, 1 != 0 +ERROR at chr 1 pos 5815, 1 != 0 +ERROR at chr 1 pos 5889, 1 != 0 +ERROR at chr 1 pos 5994, 1 != 0 +ERROR at chr 1 pos 6097, 1 != 0 +ERROR at chr 1 pos 6278, 1 != 0 +ERROR at chr 1 pos 6558, 1 != 0 +ERROR at chr 1 pos 6586, 1 != 0 +ERROR at chr 1 pos 7267, 1 != 0 +ERROR at chr 1 pos 7306, 1 != 0 +ERROR at chr 1 pos 7400, 1 != 0 +ERROR at chr 1 pos 7482, 1 != 0 +ERROR at chr 1 pos 7489, 1 != 0 +ERROR at chr 1 pos 7634, 1 != 0 +ERROR at chr 1 pos 7681, 1 != 0 +ERROR at chr 1 pos 8202, 1 != 0 +ERROR at chr 1 pos 8332, 1 != 0 +ERROR at chr 1 pos 8396, 1 != 0 +ERROR at chr 1 pos 8478, 1 != 0 +ERROR at chr 1 pos 8509, 1 != 0 +ERROR at chr 1 pos 8554, 1 != 0 +ERROR at chr 1 pos 8584, 1 != 0 +ERROR at chr 1 pos 8641, 1 != 0 +ERROR at chr 1 pos 8667, 1 != 0 +ERROR at chr 1 pos 8832, 1 != 0 +ERROR at chr 2 pos 237, 1 != 0 +ERROR at chr 2 pos 239, 1 != 0 +ERROR at chr 2 pos 262, 1 != 0 +ERROR at chr 2 pos 354, 1 != 0 +ERROR at chr 2 pos 369, 1 != 0 +ERROR at chr 2 pos 437, 1 != 0 +ERROR at chr 2 pos 554, 1 != 0 +ERROR at chr 2 pos 743, 1 != 0 +ERROR at chr 2 pos 754, 1 != 0 +ERROR at chr 2 pos 811, 1 != 0 +ERROR at chr 2 pos 835, 1 != 0 +ERROR at chr 2 pos 995, 1 != 0 +ERROR at chr 2 pos 1045, 1 != 0 +ERROR at chr 2 pos 1209, 1 != 0 +ERROR at chr 2 pos 1371, 1 != 0 +ERROR at chr 2 pos 1460, 1 != 0 +ERROR at chr 2 pos 2366, 1 != 0 +ERROR at chr 2 pos 2442, 1 != 0 +ERROR at chr 2 pos 2452, 1 != 0 +ERROR at chr 2 pos 2788, 1 != 0 +ERROR at chr 2 pos 2932, 1 != 0 +ERROR at chr 2 pos 2967, 1 != 0 +ERROR at chr 2 pos 3057, 1 != 0 +ERROR at chr 2 pos 3087, 1 != 0 +ERROR at chr 2 pos 3101, 1 != 0 +ERROR at chr 2 pos 3110, 1 != 0 +ERROR at chr 2 pos 3403, 1 != 0 +ERROR at chr 2 pos 3452, 1 != 0 +ERROR at chr 2 pos 3459, 1 != 0 +ERROR at chr 2 pos 3650, 1 != 0 +ERROR at chr 2 pos 3974, 1 != 0 +ERROR at chr 2 pos 3987, 1 != 0 +ERROR at chr 2 pos 4123, 1 != 0 +ERROR at chr 2 pos 4135, 1 != 0 +ERROR at chr 2 pos 4157, 1 != 0 +ERROR at chr 2 pos 4335, 1 != 0 +ERROR at chr 2 pos 4387, 1 != 0 +ERROR at chr 2 pos 4449, 1 != 0 +ERROR at chr 2 pos 4597, 1 != 0 +ERROR at chr 2 pos 4598, 1 != 0 +ERROR at chr 2 pos 4960, 1 != 0 +ERROR at chr 2 pos 4972, 1 != 0 +ERROR at chr 2 pos 5097, 1 != 0 +ERROR at chr 2 pos 5454, 1 != 0 +ERROR at chr 2 pos 5526, 1 != 0 +ERROR at chr 2 pos 5551, 1 != 0 +ERROR at chr 2 pos 5624, 1 != 0 +ERROR at chr 2 pos 5923, 1 != 0 +ERROR at chr 2 pos 6131, 1 != 0 +ERROR at chr 2 pos 6215, 1 != 0 +ERROR at chr 2 pos 6314, 1 != 0 +ERROR at chr 2 pos 6602, 1 != 0 +ERROR at chr 2 pos 6629, 1 != 0 +ERROR at chr 2 pos 6717, 1 != 0 +ERROR at chr 2 pos 6802, 1 != 0 +ERROR at chr 2 pos 6829, 1 != 0 +ERROR at chr 2 pos 6983, 1 != 0 +ERROR at chr 2 pos 7179, 1 != 0 +ERROR at chr 2 pos 7308, 1 != 0 +ERROR at chr 2 pos 7345, 1 != 0 +ERROR at chr 2 pos 7494, 1 != 0 +ERROR at chr 2 pos 7525, 1 != 0 +ERROR at chr 2 pos 7532, 1 != 0 +ERROR at chr 2 pos 7720, 1 != 0 +ERROR at chr 2 pos 7787, 1 != 0 +ERROR at chr 2 pos 7802, 1 != 0 +ERROR at chr 2 pos 7895, 1 != 0 +ERROR at chr 2 pos 8225, 1 != 0 +ERROR at chr 2 pos 8341, 1 != 0 +ERROR at chr 2 pos 8356, 1 != 0 +ERROR at chr 2 pos 8503, 1 != 0 +ERROR at chr 2 pos 8534, 1 != 0 +ERROR at chr 2 pos 8582, 1 != 0 +ERROR at chr 2 pos 8672, 1 != 0 +ERROR at chr 2 pos 8759, 1 != 0 +ERROR at chr 2 pos 8764, 1 != 0 +ERROR at chr 2 pos 8861, 1 != 0 ERROR at chr 3 pos 159, 1 != 0 -ERROR at chr 3 pos 168, 1 != 0 -ERROR at chr 3 pos 1441, 1 != 0 -ERROR at chr 3 pos 1514, 1 != 0 -ERROR at chr 3 pos 2230, 1 != 0 -ERROR at chr 3 pos 2595, 1 != 0 -ERROR at chr 3 pos 2990, 1 != 0 -ERROR at chr 3 pos 3664, 1 != 0 -ERROR at chr 3 pos 3727, 1 != 0 -ERROR at chr 3 pos 4474, 1 != 0 -ERROR at chr 3 pos 4804, 1 != 0 -ERROR at chr 3 pos 4890, 1 != 0 -ERROR at chr 3 pos 5226, 1 != 0 -ERROR at chr 3 pos 5376, 1 != 0 -ERROR at chr 3 pos 5378, 1 != 0 -ERROR at chr 3 pos 5713, 1 != 0 -ERROR at chr 3 pos 6510, 1 != 0 -ERROR at chr 3 pos 7235, 1 != 0 -ERROR at chr 3 pos 7346, 1 != 0 -ERROR at chr 3 pos 7611, 1 != 0 -ERROR at chr 3 pos 7694, 1 != 0 -ERROR at chr 3 pos 7877, 1 != 0 -ERROR at chr 3 pos 8419, 1 != 0 -ERROR at chr 3 pos 8830, 1 != 0 -ERROR at chr 4 pos 171, 1 != 0 -ERROR at chr 4 pos 500, 1 != 0 -ERROR at chr 4 pos 1134, 1 != 0 -ERROR at chr 4 pos 1265, 1 != 0 -ERROR at chr 4 pos 1368, 1 != 0 -ERROR at chr 4 pos 1521, 1 != 0 -ERROR at chr 4 pos 1799, 1 != 0 -ERROR at chr 4 pos 2045, 1 != 0 -ERROR at chr 4 pos 2816, 1 != 0 -ERROR at chr 4 pos 3055, 1 != 0 -ERROR at chr 4 pos 3422, 1 != 0 -ERROR at chr 4 pos 3684, 1 != 0 -ERROR at chr 4 pos 3749, 1 != 0 -ERROR at chr 4 pos 4504, 1 != 0 -ERROR at chr 4 pos 4705, 1 != 0 -ERROR at chr 4 pos 4830, 1 != 0 -ERROR at chr 4 pos 5729, 1 != 0 -ERROR at chr 4 pos 7523, 1 != 0 -ERROR at chr 4 pos 7718, 1 != 0 -ERROR at chr 4 pos 7904, 1 != 0 -ERROR at chr 4 pos 7941, 1 != 0 -ERROR at chr 4 pos 8296, 1 != 0 -ERROR at chr 4 pos 8456, 1 != 0 -ERROR at chr 4 pos 8551, 1 != 0 -ERROR at chr 4 pos 8710, 1 != 0 -ERROR at chr 5 pos 148, 1 != 0 -ERROR at chr 5 pos 214, 1 != 0 -ERROR at chr 5 pos 503, 1 != 0 -ERROR at chr 5 pos 1515, 1 != 0 -ERROR at chr 5 pos 2267, 1 != 0 -ERROR at chr 5 pos 2585, 1 != 0 -ERROR at chr 5 pos 2812, 1 != 0 -ERROR at chr 5 pos 3677, 1 != 0 -ERROR at chr 5 pos 3741, 1 != 0 -ERROR at chr 5 pos 4075, 1 != 0 -ERROR at chr 5 pos 4492, 1 != 0 -ERROR at chr 5 pos 4606, 1 != 0 -ERROR at chr 5 pos 4607, 1 != 0 -ERROR at chr 5 pos 4818, 1 != 0 -ERROR at chr 5 pos 5629, 1 != 0 -ERROR at chr 5 pos 5722, 1 != 0 -ERROR at chr 5 pos 5847, 1 != 0 -ERROR at chr 5 pos 6393, 1 != 0 -ERROR at chr 5 pos 6679, 1 != 0 -ERROR at chr 5 pos 6857, 1 != 0 -ERROR at chr 5 pos 7034, 1 != 0 -ERROR at chr 5 pos 7511, 1 != 0 -ERROR at chr 5 pos 8109, 1 != 0 -ERROR at chr 5 pos 8423, 1 != 0 -ERROR at chr 5 pos 8431, 1 != 0 -ERROR at chr 5 pos 8687, 1 != 0 -ERROR at chr 5 pos 8757, 1 != 0 -ERROR at chr 5 pos 8838, 1 != 0 -ERROR at chr 5 pos 8946, 1 != 0 +ERROR at chr 3 pos 230, 1 != 0 +ERROR at chr 3 pos 232, 1 != 0 +ERROR at chr 3 pos 270, 1 != 0 +ERROR at chr 3 pos 345, 1 != 0 +ERROR at chr 3 pos 472, 1 != 0 +ERROR at chr 3 pos 645, 1 != 0 +ERROR at chr 3 pos 647, 1 != 0 +ERROR at chr 3 pos 676, 1 != 0 +ERROR at chr 3 pos 736, 1 != 0 +ERROR at chr 3 pos 809, 1 != 0 +ERROR at chr 3 pos 1036, 1 != 0 +ERROR at chr 3 pos 1267, 1 != 0 +ERROR at chr 3 pos 1369, 1 != 0 +ERROR at chr 3 pos 1444, 1 != 0 +ERROR at chr 3 pos 1446, 1 != 0 +ERROR at chr 3 pos 1964, 1 != 0 +ERROR at chr 3 pos 2320, 1 != 0 +ERROR at chr 3 pos 2431, 1 != 0 +ERROR at chr 3 pos 2441, 1 != 0 +ERROR at chr 3 pos 2769, 1 != 0 +ERROR at chr 3 pos 2843, 1 != 0 +ERROR at chr 3 pos 2914, 1 != 0 +ERROR at chr 3 pos 3091, 1 != 0 +ERROR at chr 3 pos 3239, 1 != 0 +ERROR at chr 3 pos 3436, 1 != 0 +ERROR at chr 3 pos 3844, 1 != 0 +ERROR at chr 3 pos 3948, 1 != 0 +ERROR at chr 3 pos 4099, 1 != 0 +ERROR at chr 3 pos 4101, 1 != 0 +ERROR at chr 3 pos 4112, 1 != 0 +ERROR at chr 3 pos 4135, 1 != 0 +ERROR at chr 3 pos 4162, 1 != 0 +ERROR at chr 3 pos 4236, 1 != 0 +ERROR at chr 3 pos 4321, 1 != 0 +ERROR at chr 3 pos 4361, 1 != 0 +ERROR at chr 3 pos 4425, 1 != 0 +ERROR at chr 3 pos 4433, 1 != 0 +ERROR at chr 3 pos 4572, 1 != 0 +ERROR at chr 3 pos 4573, 1 != 0 +ERROR at chr 3 pos 4619, 1 != 0 +ERROR at chr 3 pos 4932, 1 != 0 +ERROR at chr 3 pos 4979, 1 != 0 +ERROR at chr 3 pos 4998, 1 != 0 +ERROR at chr 3 pos 5036, 1 != 0 +ERROR at chr 3 pos 5074, 1 != 0 +ERROR at chr 3 pos 5221, 1 != 0 +ERROR at chr 3 pos 5429, 1 != 0 +ERROR at chr 3 pos 5470, 1 != 0 +ERROR at chr 3 pos 5499, 1 != 0 +ERROR at chr 3 pos 5525, 1 != 0 +ERROR at chr 3 pos 5602, 1 != 0 +ERROR at chr 3 pos 5973, 1 != 0 +ERROR at chr 3 pos 6111, 1 != 0 +ERROR at chr 3 pos 6294, 1 != 0 +ERROR at chr 3 pos 6572, 1 != 0 +ERROR at chr 3 pos 6601, 1 != 0 +ERROR at chr 3 pos 6805, 1 != 0 +ERROR at chr 3 pos 6925, 1 != 0 +ERROR at chr 3 pos 6953, 1 != 0 +ERROR at chr 3 pos 7281, 1 != 0 +ERROR at chr 3 pos 7321, 1 != 0 +ERROR at chr 3 pos 7416, 1 != 0 +ERROR at chr 3 pos 7495, 1 != 0 +ERROR at chr 3 pos 7810, 1 != 0 +ERROR at chr 3 pos 7899, 1 != 0 +ERROR at chr 3 pos 8039, 1 != 0 +ERROR at chr 3 pos 8040, 1 != 0 +ERROR at chr 3 pos 8198, 1 != 0 +ERROR at chr 3 pos 8329, 1 != 0 +ERROR at chr 3 pos 8462, 1 != 0 +ERROR at chr 3 pos 8463, 1 != 0 +ERROR at chr 3 pos 8473, 1 != 0 +ERROR at chr 3 pos 8554, 1 != 0 +ERROR at chr 3 pos 8654, 1 != 0 +ERROR at chr 3 pos 8735, 1 != 0 +ERROR at chr 3 pos 8833, 1 != 0 +ERROR at chr 4 pos 232, 1 != 0 +ERROR at chr 4 pos 273, 1 != 0 +ERROR at chr 4 pos 285, 1 != 0 +ERROR at chr 4 pos 346, 1 != 0 +ERROR at chr 4 pos 362, 1 != 0 +ERROR at chr 4 pos 672, 1 != 0 +ERROR at chr 4 pos 732, 1 != 0 +ERROR at chr 4 pos 829, 1 != 0 +ERROR at chr 4 pos 1041, 1 != 0 +ERROR at chr 4 pos 1365, 1 != 0 +ERROR at chr 4 pos 2108, 1 != 0 +ERROR at chr 4 pos 2423, 1 != 0 +ERROR at chr 4 pos 2433, 1 != 0 +ERROR at chr 4 pos 2572, 1 != 0 +ERROR at chr 4 pos 2688, 1 != 0 +ERROR at chr 4 pos 2902, 1 != 0 +ERROR at chr 4 pos 2967, 1 != 0 +ERROR at chr 4 pos 3076, 1 != 0 +ERROR at chr 4 pos 3308, 1 != 0 +ERROR at chr 4 pos 3592, 1 != 0 +ERROR at chr 4 pos 3830, 1 != 0 +ERROR at chr 4 pos 3918, 1 != 0 +ERROR at chr 4 pos 3929, 1 != 0 +ERROR at chr 4 pos 4213, 1 != 0 +ERROR at chr 4 pos 4339, 1 != 0 +ERROR at chr 4 pos 4405, 1 != 0 +ERROR at chr 4 pos 4413, 1 != 0 +ERROR at chr 4 pos 4592, 1 != 0 +ERROR at chr 4 pos 4945, 1 != 0 +ERROR at chr 4 pos 4949, 1 != 0 +ERROR at chr 4 pos 5013, 1 != 0 +ERROR at chr 4 pos 5043, 1 != 0 +ERROR at chr 4 pos 5188, 1 != 0 +ERROR at chr 4 pos 5295, 1 != 0 +ERROR at chr 4 pos 5395, 1 != 0 +ERROR at chr 4 pos 5467, 1 != 0 +ERROR at chr 4 pos 5865, 1 != 0 +ERROR at chr 4 pos 5932, 1 != 0 +ERROR at chr 4 pos 6072, 1 != 0 +ERROR at chr 4 pos 6261, 1 != 0 +ERROR at chr 4 pos 6538, 1 != 0 +ERROR at chr 4 pos 6566, 1 != 0 +ERROR at chr 4 pos 6772, 1 != 0 +ERROR at chr 4 pos 6892, 1 != 0 +ERROR at chr 4 pos 6924, 1 != 0 +ERROR at chr 4 pos 6976, 1 != 0 +ERROR at chr 4 pos 7253, 1 != 0 +ERROR at chr 4 pos 7291, 1 != 0 +ERROR at chr 4 pos 7381, 1 != 0 +ERROR at chr 4 pos 7431, 1 != 0 +ERROR at chr 4 pos 7459, 1 != 0 +ERROR at chr 4 pos 7466, 1 != 0 +ERROR at chr 4 pos 7507, 1 != 0 +ERROR at chr 4 pos 7584, 1 != 0 +ERROR at chr 4 pos 7605, 1 != 0 +ERROR at chr 4 pos 8086, 1 != 0 +ERROR at chr 4 pos 8167, 1 != 0 +ERROR at chr 4 pos 8448, 1 != 0 +ERROR at chr 4 pos 8479, 1 != 0 +ERROR at chr 4 pos 8619, 1 != 0 +ERROR at chr 4 pos 8632, 1 != 0 +ERROR at chr 4 pos 8647, 1 != 0 +ERROR at chr 4 pos 8716, 1 != 0 +ERROR at chr 4 pos 8811, 1 != 0 +ERROR at chr 5 pos 64, 1 != 0 +ERROR at chr 5 pos 235, 1 != 0 +ERROR at chr 5 pos 277, 1 != 0 +ERROR at chr 5 pos 351, 1 != 0 +ERROR at chr 5 pos 367, 1 != 0 +ERROR at chr 5 pos 675, 1 != 0 +ERROR at chr 5 pos 736, 1 != 0 +ERROR at chr 5 pos 832, 1 != 0 +ERROR at chr 5 pos 987, 1 != 0 +ERROR at chr 5 pos 1039, 1 != 0 +ERROR at chr 5 pos 1068, 1 != 0 +ERROR at chr 5 pos 1433, 1 != 0 +ERROR at chr 5 pos 1435, 1 != 0 +ERROR at chr 5 pos 2099, 1 != 0 +ERROR at chr 5 pos 2271, 1 != 0 +ERROR at chr 5 pos 2416, 1 != 0 +ERROR at chr 5 pos 2426, 1 != 0 +ERROR at chr 5 pos 2534, 1 != 0 +ERROR at chr 5 pos 2567, 1 != 0 +ERROR at chr 5 pos 2598, 1 != 0 +ERROR at chr 5 pos 2894, 1 != 0 +ERROR at chr 5 pos 3421, 1 != 0 +ERROR at chr 5 pos 3676, 1 != 0 +ERROR at chr 5 pos 4073, 1 != 0 +ERROR at chr 5 pos 4085, 1 != 0 +ERROR at chr 5 pos 4108, 1 != 0 +ERROR at chr 5 pos 4124, 1 != 0 +ERROR at chr 5 pos 4207, 1 != 0 +ERROR at chr 5 pos 4409, 1 != 0 +ERROR at chr 5 pos 4545, 1 != 0 +ERROR at chr 5 pos 4546, 1 != 0 +ERROR at chr 5 pos 4593, 1 != 0 +ERROR at chr 5 pos 4682, 1 != 0 +ERROR at chr 5 pos 4838, 1 != 0 +ERROR at chr 5 pos 4906, 1 != 0 +ERROR at chr 5 pos 4951, 1 != 0 +ERROR at chr 5 pos 5194, 1 != 0 +ERROR at chr 5 pos 5261, 1 != 0 +ERROR at chr 5 pos 5331, 1 != 0 +ERROR at chr 5 pos 5412, 1 != 0 +ERROR at chr 5 pos 5512, 1 != 0 +ERROR at chr 5 pos 5593, 1 != 0 +ERROR at chr 5 pos 5596, 1 != 0 +ERROR at chr 5 pos 5614, 1 != 0 +ERROR at chr 5 pos 5638, 1 != 0 +ERROR at chr 5 pos 5959, 1 != 0 +ERROR at chr 5 pos 6010, 1 != 0 +ERROR at chr 5 pos 6278, 1 != 0 +ERROR at chr 5 pos 6558, 1 != 0 +ERROR at chr 5 pos 6586, 1 != 0 +ERROR at chr 5 pos 6797, 1 != 0 +ERROR at chr 5 pos 6947, 1 != 0 +ERROR at chr 5 pos 7143, 1 != 0 +ERROR at chr 5 pos 7272, 1 != 0 +ERROR at chr 5 pos 7311, 1 != 0 +ERROR at chr 5 pos 7404, 1 != 0 +ERROR at chr 5 pos 7458, 1 != 0 +ERROR at chr 5 pos 7493, 1 != 0 +ERROR at chr 5 pos 8199, 1 != 0 +ERROR at chr 5 pos 8231, 1 != 0 +ERROR at chr 5 pos 8249, 1 != 0 +ERROR at chr 5 pos 8333, 1 != 0 +ERROR at chr 5 pos 8413, 1 != 0 +ERROR at chr 5 pos 8481, 1 != 0 +ERROR at chr 5 pos 8512, 1 != 0 +ERROR at chr 5 pos 8561, 1 != 0 +ERROR at chr 5 pos 8740, 1 != 0 +ERROR at chr 5 pos 8841, 1 != 0 Test # 0 FAILED obj-*/graphconstructor/twopaco -f 20 -k 11 example/example.fa -o example/example.dbg Threads = 1 @@ -3435,7 +3737,7 @@ -------------------------------------------------------------------------------- Round 0, 0:1048576 Pass Filling Filtering -1 0 0 +1 0 1 2 0 0 True junctions count = 7 False junctions count = 0 @@ -3456,7 +3758,7 @@ dh_testroot -O--sourcedir=src dh_prep -O--sourcedir=src dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -3567,14 +3869,14 @@ dh_strip -a -O--sourcedir=src dh_makeshlibs -a -O--sourcedir=src dh_shlibdeps -a -O--sourcedir=src -dpkg-shlibdeps: warning: debian/twopaco/usr/bin/graphdump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/twopaco/usr/bin/twopaco contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/twopaco/usr/bin/graphdump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--sourcedir=src dh_gencontrol -O--sourcedir=src dh_md5sums -O--sourcedir=src dh_builddeb -O--sourcedir=src -dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_armhf.deb'. dpkg-deb: building package 'twopaco-dbgsym' in '../twopaco-dbgsym_1.0.0+dfsg-1_armhf.deb'. +dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../twopaco_1.0.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../twopaco_1.0.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3582,12 +3884,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/25992/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/25992/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/30813 and its subdirectories -I: Current time: Fri Apr 12 16:13:19 -12 2024 -I: pbuilder-time-stamp: 1712981599 +I: removing directory /srv/workspace/pbuilder/25992 and its subdirectories +I: Current time: Sat Apr 13 18:35:41 +14 2024 +I: pbuilder-time-stamp: 1712982941