Diff of the two buildlogs: -- --- b1/build.log 2024-05-12 10:36:33.390325295 +0000 +++ b2/build.log 2024-05-12 12:20:23.249048624 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 11 14:52:20 -12 2024 -I: pbuilder-time-stamp: 1715482340 +I: Current time: Mon May 13 00:43:31 +14 2024 +I: pbuilder-time-stamp: 1715510611 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying 0004-Patch-to-use-libpwizlite-and-libhts-from-the-system.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/28870/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/15274/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 12 10:43 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/15274/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/15274/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='dd29371c91564d1fb768257bf57a9f8e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='28870' - PS1='# ' - PS2='> ' + INVOCATION_ID=b852e5fa39d441ed8074cc0490bd0dd9 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=15274 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/pbuilderrc_5Tb9 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/b1 --logfile b1/build.log toppic_1.5.3+dfsg1-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/pbuilderrc_0JLM --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/b2 --logfile b2/build.log toppic_1.5.3+dfsg1-1.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4a 6.1.0-21-armmp #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 9 11:27 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/28870/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 11 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/15274/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -400,7 +432,7 @@ Get: 239 http://deb.debian.org/debian trixie/main armhf qt5-qmake armhf 5.15.10+dfsg-7.2+b1 [223 kB] Get: 240 http://deb.debian.org/debian trixie/main armhf qtbase5-dev-tools armhf 5.15.10+dfsg-7.2+b1 [651 kB] Get: 241 http://deb.debian.org/debian trixie/main armhf qtbase5-dev armhf 5.15.10+dfsg-7.2+b1 [1068 kB] -Fetched 140 MB in 26s (5375 kB/s) +Fetched 140 MB in 4s (32.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19446 files and directories currently installed.) @@ -1183,8 +1215,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun May 12 03:00:00 UTC 2024. -Universal Time is now: Sun May 12 03:00:00 UTC 2024. +Local time is now: Sun May 12 10:47:17 UTC 2024. +Universal Time is now: Sun May 12 10:47:17 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:armhf (1.83.0-2.1+b1) ... @@ -1397,7 +1429,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes +I: user script /srv/workspace/pbuilder/15274/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/15274/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes dpkg-buildpackage: info: source package toppic dpkg-buildpackage: info: source version 1.5.3+dfsg1-1 dpkg-buildpackage: info: source distribution unstable @@ -1483,8 +1519,8 @@ -- HtsLib_INCLUDE_DIRS: /usr/include -- HtsLib_LIBRARIES: hts -- cmake cxx flags -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=$ORIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX --- Configuring done (8.1s) --- Generating done (6.9s) +-- Configuring done (4.9s) +-- Generating done (2.5s) CMake Warning: Manually-specified variables were not used by the project: @@ -1500,176 +1536,187 @@ -- Build files have been written to: /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_auto_build -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/toppic-1.5.3+dfsg1 -B/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/depend -make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/depend -make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/depend cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build -make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Built target topfd_gui_autogen_timestamp_deps -make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/depend -[ 0%] Built target topfd_autogen_timestamp_deps -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 0%] Built target topindex_autogen_timestamp_deps -make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend +make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 0%] Built target topfd_autogen_timestamp_deps make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Built target topindex_gui_autogen_timestamp_deps +[ 0%] Built target topfd_gui_autogen_timestamp_deps +make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/depend -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Built target toppic_autogen_timestamp_deps +make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build +[ 0%] Built target topindex_gui_autogen_timestamp_deps +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/depend +make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build +make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Built target toppic_gui_autogen_timestamp_deps -make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Built target topmg_autogen_timestamp_deps make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build -make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 0%] Built target toppic_autogen_timestamp_deps +make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +[ 0%] Built target topmg_autogen_timestamp_deps [ 0%] Built target topmg_gui_autogen_timestamp_deps -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Built target topdiff_autogen_timestamp_deps -make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/depend +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -[ 0%] Built target topdiff_gui_autogen_timestamp_deps -make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/depend +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 0%] Built target toppic_gui_autogen_timestamp_deps make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topmerge_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/build +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'CMakeFiles/topconvert_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build [ 0%] Built target topmerge_autogen_timestamp_deps +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 0%] Built target topdiff_autogen_timestamp_deps +make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +[ 0%] Built target topmerge_gui_autogen_timestamp_deps make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend +[ 0%] Built target topdiff_gui_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" -[ 0%] Built target topconvert_autogen_timestamp_deps make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color=" -[ 0%] Built target topmerge_gui_autogen_timestamp_deps make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Automatic MOC and UIC for target topfd -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'CMakeFiles/topconvert_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Automatic MOC and UIC for target topfd_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/AutogenInfo.json release +[ 0%] Built target topconvert_autogen_timestamp_deps +make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_autogen/moc_predefs.h", because it doesn't exist. +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf [ 0%] Automatic MOC and UIC for target topindex /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release +[ 0%] Automatic MOC and UIC for target topfd +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf +[ 0%] Automatic MOC and UIC for target topindex_gui AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" @@ -1685,628 +1732,793 @@ AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" -AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" 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"SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/console/topindex.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/console/topfd.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/deps" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/ParseCache.txt" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/timestamp +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topindex.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/deps" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/ParseCache.txt" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" +[ 0%] Built target topindex_autogen AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" +make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" @@ -2319,40 +2531,31 @@ AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/timestamp AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topfd_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topfd_autogen/deps" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topfd_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/timestamp -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Built target topfd_autogen -make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend -[ 0%] Built target topindex_autogen -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Automatic MOC and UIC for target toppic +[ 0%] Built target topfd_autogen /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/AutogenInfo.json release -[ 0%] Automatic MOC and UIC for target topindex_gui -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf +make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" @@ -2393,167 +2596,6 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" -AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" @@ -2572,8 +2614,10 @@ AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +[ 1%] Automatic MOC and UIC for target toppic_gui AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" @@ -2655,9 +2699,12 @@ AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" @@ -2692,291 +2739,6 @@ AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/toppic.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/toppic_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/toppic_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/timestamp -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 0%] Built target toppic_autogen -make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Automatic MOC and UIC for target toppic_gui -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" @@ -2995,6 +2757,7 @@ AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" @@ -3013,31 +2776,53 @@ AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.h" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.h" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" @@ -3061,6 +2846,7 @@ AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" @@ -3088,6 +2874,8 @@ AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" @@ -3105,6 +2893,7 @@ AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" @@ -3133,6 +2922,7 @@ AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" @@ -3144,6 +2934,9 @@ AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" @@ -3167,6 +2960,7 @@ AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" @@ -3177,6 +2971,8 @@ AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" @@ -3186,6 +2982,8 @@ AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" @@ -3195,13 +2993,62 @@ AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" @@ -3242,10 +3089,26 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/console/toppic.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" +AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" @@ -3259,17 +3122,85 @@ AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" @@ -3301,6 +3232,8 @@ AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" @@ -3333,68 +3266,142 @@ AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" @@ -3403,73 +3410,79 @@ AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/toppic_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/toppic_autogen/deps" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp.d" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp.d" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" -AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include/ui_topfddialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/timestamp +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Built target topfd_gui_autogen +[ 1%] Built target toppic_autogen make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color=" -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" -AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/timestamp [ 1%] Automatic MOC and UIC for target topmg /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Built target topindex_gui_autogen +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp.d" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp.d" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp AutoGen: Refreshing parse cache because it doesn't exist. -make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" @@ -3484,8 +3497,6 @@ AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" @@ -3514,7 +3525,6 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" @@ -3725,7 +3735,6 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmg.cpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" -[ 1%] Automatic MOC and UIC for target topmg_gui AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" @@ -3742,7 +3751,6 @@ AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" @@ -3901,10 +3909,19 @@ AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/timestamp +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 1%] Built target topmg_autogen +make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 1%] Automatic MOC and UIC for target topmg_gui +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" @@ -4199,7 +4216,6 @@ AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -[ 1%] Built target topmg_autogen AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" @@ -4231,7 +4247,6 @@ AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" @@ -4262,8 +4277,6 @@ AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" @@ -4338,14 +4351,46 @@ AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" +AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/timestamp +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" +AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include/ui_topfddialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui +[ 1%] Built target topindex_gui_autogen +make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color=" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/timestamp +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 1%] Built target topfd_gui_autogen +make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 1%] Automatic MOC and UIC for target topdiff_gui [ 1%] Automatic MOC and UIC for target topdiff +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/moc_predefs.h", because it doesn't exist. +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" @@ -4388,7 +4433,12 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" +AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.h" +AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.h" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" @@ -4552,151 +4602,7 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/timestamp -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Built target topdiff_autogen -make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Automatic MOC and UIC for target topdiff_gui -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" @@ -4739,9 +4645,6 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.h" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.h" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" @@ -4777,6 +4680,7 @@ AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" @@ -4795,6 +4699,7 @@ AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" @@ -4829,6 +4734,7 @@ AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" @@ -4872,6 +4778,7 @@ AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" @@ -4885,9 +4792,11 @@ AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" @@ -4906,44 +4815,73 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" @@ -4984,6 +4922,93 @@ AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" @@ -5029,6 +5054,15 @@ AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/timestamp AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" @@ -5038,22 +5072,8 @@ AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.h -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp.d" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.h -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp.d" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" -AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Built target topdiff_gui_autogen +[ 1%] Built target topdiff_autogen make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_autogen.dir/DependInfo.cmake "--color=" @@ -5805,28 +5825,28 @@ AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/threadtopmerge.h -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp.d" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.h -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp.d" -AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d" -AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.ui -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/timestamp +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp.d" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.h +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" +AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Built target topmerge_gui_autogen +[ 1%] Built target topdiff_gui_autogen make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp.d" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.h [ 1%] Automatic MOC and UIC for target topconvert /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. @@ -6178,16 +6198,16 @@ /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/mocs_compilation.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/console/topfd.cpp.o -MF CMakeFiles/topfd.dir/src/console/topfd.cpp.o.d -o CMakeFiles/topfd.dir/src/console/topfd.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd.cpp -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp.d" -AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include/ui_toppicwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.ui -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/timestamp +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d" +AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.ui +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Built target toppic_gui_autogen +[ 1%] Built target topmerge_gui_autogen make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Automatic RCC for src/gui/topfd/icon.qrc @@ -6203,16 +6223,22 @@ make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/mocs_compilation.cpp -AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" -AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include/ui_topmgwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.ui -AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/timestamp +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp.d" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp.d" +AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp.d" +AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include/ui_toppicwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.ui +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 1%] Built target topmg_gui_autogen +[ 1%] Built target toppic_gui_autogen make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex.dir/DependInfo.cmake "--color=" @@ -6225,6 +6251,31 @@ /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/mocs_compilation.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex.cpp +AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" +AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include/ui_topmgwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.ui +AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch 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'/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 2%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/mocs_compilation.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -6236,12 +6287,14 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o +[ 2%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_argument.cpp +[ 2%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o -MF CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -6253,8 +6306,19 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o +[ 2%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/topindex_gui.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/gui/topindex/topindex_gui.cpp.o -MF CMakeFiles/topindex_gui.dir/src/gui/topindex/topindex_gui.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/gui/topindex/topindex_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp +[ 2%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp: In function 'int main(int, char**)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 40 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp:19: +/usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); @@ -6264,13 +6328,15 @@ /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ -[ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o +[ 2%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/topindexdialog.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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object CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, @@ -6288,31 +6354,18 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_para.cpp.o +[ 2%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/console/topindex_argument.cpp.o -MF CMakeFiles/topindex_gui.dir/src/console/topindex_argument.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/console/topindex_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_argument.cpp +[ 2%] Building CXX object 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_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -[ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::DeconvOneSp::preprocess()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp:91:22: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, @@ -6329,18 +6382,33 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp -[ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::DeconvOneSp::preprocess()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp:91:22: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -6402,6 +6470,8 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::DeconvProcess::processSp(toppic::RawMsGroupReaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:464:25: @@ -6414,6 +6484,8 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 2%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: @@ -6434,8 +6506,12 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o +[ 2%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/co_table.cpp +[ 2%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -6489,17 +6565,13 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, @@ -6507,13 +6579,17 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/prot_mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp -[ 2%] Building CXX object 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.cpp -[ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp -[ 2%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o +In file included from /usr/include/c++/13/bits/stl_algo.h:61, + from /usr/include/c++/13/algorithm:61, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include 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/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o +[ 4%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp +[ 4%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_para.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex.hpp:19, @@ -6609,16 +6776,34 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 3%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o +[ 4%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -6634,10 +6819,16 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/util/logger.cpp.o +[ 6%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp +[ 6%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 6%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: @@ -6645,30 +6836,61 @@ /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o +[ 6%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +[ 6%] Building CXX object CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 7%] Building CXX object 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 7%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/queue:63, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_traits.hpp:17, @@ -6710,6 +6932,13 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/map:62, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: +/usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': +/usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 + 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: @@ -6794,11 +7023,13 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/break_point.cpp.o +[ 7%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 7%] Building CXX object CMakeFiles/topindex.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 @@ -6826,10 +7057,14 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o +[ 7%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/queue:63, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_traits.hpp:17, @@ -6842,8 +7077,20 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o +[ 7%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:66: @@ -6870,10 +7117,10 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -6899,8 +7146,14 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -6913,10 +7166,129 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o +[ 8%] Building CXX object CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o +In file included from /usr/include/c++/13/bits/stl_algo.h:61, + from /usr/include/c++/13/algorithm:61, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 8%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/composition.hpp:16, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/compare.hpp:10, @@ -6934,8 +7306,10 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp In file included from /usr/include/c++/13/memory:69, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/composition.hpp:17: /usr/include/c++/13/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*]': @@ -6974,7 +7348,25 @@ /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o +[ 8%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 9%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp In file included from /usr/include/c++/13/memory:69, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/composition.hpp:17: @@ -7004,8 +7396,22 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*]' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, @@ -7016,6 +7422,8 @@ /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -7040,18 +7448,18 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o +[ 9%] Building CXX object CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object CMakeFiles/topindex.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp +[ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o +[ 9%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -7187,8 +7631,12 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp +[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, @@ -7198,9 +7646,24 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o -MF 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp -[ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o +[ 10%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.hpp:18, @@ -7230,10 +7693,12 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o +[ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp -[ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp +[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, @@ -7255,12 +7720,24 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp +[ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp -[ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, + from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp -[ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -7273,6 +7750,20 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp +[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/index/zero_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp +[ 10%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp +[ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -7285,12 +7776,6 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp -[ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, @@ -7306,22 +7791,14 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, - from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, - from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 10%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, @@ -7330,68 +7807,81 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 10%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 6%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o +[ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: @@ -7404,8 +7894,6 @@ 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -[ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -7489,14 +7971,33 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 7%] Building CXX object CMakeFiles/topfd.dir/src/common/base/neutral_loss.cpp.o +[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/topfd.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -7574,89 +8075,89 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 8%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 12%] Building CXX object CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7672,12 +8173,12 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 9%] Building CXX object CMakeFiles/topfd.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include 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object CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: @@ -7685,8 +8186,14 @@ /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 9%] Building CXX object CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 12%] Building CXX object CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ 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CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 13%] Building CXX object 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-I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -MF 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 13%] Building CXX object CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 13%] Building CXX object CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o.d -o 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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-DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 10%] Building CXX object CMakeFiles/topfd.dir/src/para/peak_tolerance.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: @@ -7782,12 +8364,12 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o +[ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -[ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, @@ -7802,10 +8384,54 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o +[ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +[ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/mod.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +[ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 15%] Building CXX object CMakeFiles/toppic.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o.d -o 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, 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[with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -7900,44 +8513,6 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp -[ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: @@ -7945,22 +8520,26 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp +[ 16%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include 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CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp +[ 16%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: @@ -7974,112 +8553,107 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 12%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o +[ 16%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 12%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 16%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -[ 12%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/common/base/residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp +[ 16%] Building CXX object 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 17%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp -[ 13%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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13%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 17%] Building CXX object CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp + from /usr/include/boost/math/special_functions/math_fwd.hpp:26, + from /usr/include/boost/math/special_functions/gamma.hpp:25, + from /usr/include/boost/math/distributions/poisson.hpp:40, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -8095,14 +8669,40 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 17%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 17%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: @@ -8110,6 +8710,41 @@ /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 17%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 18%] Building CXX object CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include 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CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 19%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 19%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -8327,80 +8932,20 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -In file included from /usr/include/c++/13/vector:72, - from /usr/include/boost/math/special_functions/math_fwd.hpp:26, - from /usr/include/boost/math/special_functions/gamma.hpp:25, - from /usr/include/boost/math/distributions/poisson.hpp:40, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -8413,12 +8958,56 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 19%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include 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19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ 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CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, @@ -8428,13 +9017,6 @@ /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, 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[with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: @@ -8476,28 +9058,17 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 15%] Building CXX object 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Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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[with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -[ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 21%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include 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object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -8601,38 +9156,48 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 17%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 17%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 17%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 18%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 23%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp -[ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 19%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 23%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o 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src/gui/toppic/icon.qrc /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/AutoRcc_icon_23BTPJIYMA_Info.json release AutoRcc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/icon.qrc @@ -8759,55 +9256,106 @@ make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/toppic_gui.dir/build.make CMakeFiles/toppic_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 20%] Building CXX object CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o +[ 23%] Building CXX object 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'/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 23%] Built target topfd +make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg.dir/DependInfo.cmake "--color=" +Dependencies file "topmg_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target topmg +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' +[ 23%] Building CXX object CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: + inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 23%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_argument.cpp +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.cpp -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: 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CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 24%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 24%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 24%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_process.cpp +[ 24%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 24%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 36 | QRect deskRect = desk->availableGeometry(); @@ -8817,53 +9365,183 @@ /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ -[ 20%] Building CXX object CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o -MF CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_argument.cpp +[ 24%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/activation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 24%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +In file included from /usr/include/c++/13/vector:72, + from /usr/include/boost/math/special_functions/math_fwd.hpp:26, + from /usr/include/boost/math/special_functions/gamma.hpp:25, + from /usr/include/boost/math/distributions/poisson.hpp:40, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 26%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 26%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp +[ 26%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: @@ -8871,6 +9549,7 @@ /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 20%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -8939,114 +9618,137 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type 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CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 22%] Building CXX object CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -[ 22%] Building CXX object CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp -[ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 28%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 28%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp -[ 22%] Building CXX object CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -[ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o +[ 28%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp -[ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o +[ 28%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp -[ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp -[ 23%] Building CXX object CMakeFiles/toppic.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ion.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -In file included from /usr/include/c++/13/map:62, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: -/usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': -/usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 - 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o +[ 28%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: @@ -9067,12 +9769,12 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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object CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o +[ 29%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 29%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp +[ 29%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 29%] Building CXX object CMakeFiles/topmg.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +[ 29%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 29%] Building CXX object CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 29%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +In file included from /usr/include/c++/13/map:62, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: +/usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': +/usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 + 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 29%] Building CXX object CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +[ 29%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 29%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp +[ 29%] Building CXX object CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 31%] Building CXX object CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +[ 31%] Building CXX object CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 31%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp -[ 24%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp -[ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/neutral_loss.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp -[ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp -[ 24%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp -[ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -[ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ @@ -9358,98 +10070,16 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 25%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp -[ 25%] Building CXX object CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 25%] Building CXX object CMakeFiles/topmg.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/support_peak_type_base.cpp.o -MF 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 25%] Building CXX object CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -9465,12 +10095,18 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o +[ 31%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 31%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp -[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o +[ 32%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 26%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: @@ -9478,108 +10114,111 @@ /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o +[ 32%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -[ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -[ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 32%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 32%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 32%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 32%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 32%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o +[ 32%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 27%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 32%] Building CXX object 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) 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CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: @@ -9592,8 +10231,6 @@ 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -[ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, @@ -9695,306 +10332,219 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp -[ 27%] Building CXX object CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -MF CMakeFiles/toppic.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 27%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -[ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: + inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -[ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o +[ 32%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 32%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +[ 33%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp +[ 33%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ 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CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +[ 33%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 33%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: + inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: + inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: + inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ 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CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp -[ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -[ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -[ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o.d -o 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 33%] Building CXX object CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 33%] Building CXX object CMakeFiles/topmg.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 33%] Building CXX object CMakeFiles/topmg.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: + inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -[ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o 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CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: + inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +[ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp +[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: + inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -[ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp -[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -MF 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -10013,74 +10563,47 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: + inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o.d -o 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -c 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: + inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -MF 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: + inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o +[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 36%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: @@ -10203,212 +10705,142 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 36%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 36%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: + inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o +[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 36%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp +[ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: + inlined from 'toppic::DpPair::DpPair(int, int, double, double, int, int, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:30:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp In file included from /usr/include/c++/13/vector:72, - from /usr/include/boost/math/special_functions/math_fwd.hpp:26, - from /usr/include/boost/math/special_functions/gamma.hpp:25, - from /usr/include/boost/math/distributions/poisson.hpp:40, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:57:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:79:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +[ 36%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp +[ 36%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp +[ 36%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp +[ 37%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::CompShiftLowMem::findBestShift(const std::vector >&, const std::vector&, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:40:21: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 37%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp +[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: + inlined from 'void toppic::PsAlign::backtrace()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:257:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ 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CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp 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in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ 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CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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Building CXX object CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp -[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, @@ -10510,6 +10882,10 @@ /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 37%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: @@ -10556,116 +10932,30 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /usr/include/boost/math/special_functions/math_fwd.hpp:26, - from /usr/include/boost/math/special_functions/gamma.hpp:25, - from /usr/include/boost/math/distributions/poisson.hpp:40, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::PtmSlowMatch::addSuffixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:101:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::PtmSlowMatch::addPrefixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:74:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 37%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp +[ 37%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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'__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -10681,20 +10971,12 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 35%] Building CXX object 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 35%] Building CXX object CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 37%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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object CMakeFiles/topmg.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/spec_feature.cpp.o 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 36%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 36%] Building CXX object 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 36%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 39%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 39%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 40%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 40%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 40%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 40%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp -[ 40%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o 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CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ 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-MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp -[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 42%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp -[ 44%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 44%] Building CXX object 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::DpPair::DpPair(int, int, double, double, int, int, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:30:22: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:57:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:79:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp -[ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::PsAlign::backtrace()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:257:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp -[ 45%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::CompShiftLowMem::findBestShift(const std::vector >&, const std::vector&, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:40:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 45%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp -[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp -[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp -[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp -[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp -[ 46%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp -[ 46%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp -[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::DpPair::DpPair(int, int, double, double, int, int, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:30:22: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::PtmSlowMatch::addSuffixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:101:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::PtmSlowMatch::addPrefixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:74:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp -[ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/dist.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:57:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:79:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp -[ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::PsAlign::backtrace()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:257:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp -[ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o 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CMakeFiles/topmg.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 38%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp +[ 38%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp +[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o 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_Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::CompShiftLowMem::findBestShift(const std::vector >&, const std::vector&, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:40:21: + inlined from 'void toppic::comp_prob_value_array::compProbArray(toppic::CompProbValuePtr, const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, const toppic::PrsmPtrVec&, bool, double, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:57:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp +[ 38%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.hpp:18, @@ -11822,8 +11077,8 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp +[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -11861,100 +11116,108 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::comp_prob_value_array::compProbArray(toppic::CompProbValuePtr, const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, const toppic::PrsmPtrVec&, bool, double, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:57:22: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o +[ 38%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp -[ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp +[ 39%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:16: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:71:24: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:73:26: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:74:26: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o -MF 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +In file included from /usr/include/c++/13/vector:72, + from /usr/include/boost/math/special_functions/math_fwd.hpp:26, + from /usr/include/boost/math/special_functions/gamma.hpp:25, + from /usr/include/boost/math/distributions/poisson.hpp:40, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.hpp:18, @@ -11969,6 +11232,8 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -11984,115 +11249,50 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp -[ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:274:24: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:284:24: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:293:26: + inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:32:35: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:63:21, - inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:65:21, - inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:69:23, - inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::CompProbValue::compute(const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, int, int, bool, double, toppic::PeakTolerancePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:114:39: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 39%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 39%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::comp_prob_value_array::compProbArray(toppic::CompProbValuePtr, const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, const toppic::PrsmPtrVec&, bool, double, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:57:22: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp +[ 39%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 42%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp +[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_argument.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:23: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::twoPtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, int, toppic::PtmPtr, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:556:27: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:319:24: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:322:24: + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp -[ 49%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/algorithm:61, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: -/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here - 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here - 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp -In file included from /usr/include/c++/13/bits/stl_algo.h:61: -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:47:28: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:50:28: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:53:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:53:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:55:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:55:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp -[ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:21: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector > toppic::DprProcessor::compPtmComb()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:126:34: + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 49%] Built target toppic -make -f 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CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/mocs_compilation.cpp -[ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.cpp -[ 49%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o +[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] - 40 | QRect deskRect = desk->availableGeometry(); - | ~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:19: -/usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here - 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; - | ^~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp -[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/mod_base.cpp.o +[ 43%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 43%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 43%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: @@ -12557,6 +11629,8 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -12610,129 +11684,139 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 52%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -[ 52%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp -[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o +[ 43%] Building CXX object CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 44%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp +[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topdiff.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +[ 47%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 47%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 47%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 47%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +[ 47%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 47%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 47%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: @@ -12753,14 +11837,23 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o 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CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/support_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp -[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +[ 47%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 47%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +In file included from /usr/include/c++/13/map:62, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: +/usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': +/usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 + 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 47%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -12814,176 +11907,60 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 54%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -In file included from /usr/include/c++/13/map:62, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: 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std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': -/usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 - 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -[ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp -[ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +[ 47%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -[ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o.d -o 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__gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: @@ -13045,15 +12022,6 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: @@ -13080,14 +12048,6 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: @@ -13114,94 +12074,109 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 48%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp +[ 48%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 48%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 48%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 48%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 48%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 48%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 48%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 48%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: + inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -13217,26 +12192,16 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: @@ -13244,94 +12209,121 @@ /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp -[ 57%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 49%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include 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CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 49%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +[ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 50%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: + inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 50%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp +[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: + inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp -[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, @@ -13445,128 +12439,32 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o 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-MF CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp -[ 59%] Building CXX object CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o +[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 50%] Building CXX object CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 59%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o +[ 50%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, @@ -13605,59 +12490,83 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp +[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 50%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 51%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 52%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 52%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 52%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: + inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 52%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +[ 52%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: + inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 59%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 59%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, @@ -13672,29 +12581,51 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: + inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: @@ -13713,58 +12644,42 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 53%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: + inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 60%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: @@ -13778,8 +12693,12 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, @@ -13794,91 +12713,84 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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-I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: + inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: + inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: @@ -13886,103 +12798,63 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 62%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp +[ 54%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 54%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp +[ 54%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp +[ 54%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 54%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp +[ 54%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 54%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: + inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o -c 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o 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CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, @@ -13992,6 +12864,8 @@ /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: @@ -14038,69 +12912,22 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -14116,29 +12943,34 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 54%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 55%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 55%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 55%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: @@ -14146,11 +12978,6 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: -/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1037 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: @@ -14161,65 +12988,83 @@ /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o +[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 63%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp +[ 55%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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-Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -14294,20 +13141,18 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: @@ -14330,128 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CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp -[ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 66%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 66%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 66%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 67%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o +[ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 56%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp +[ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 58%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: @@ -14495,97 +13285,202 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 59%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp +[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp +[ 59%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp +[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 59%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp +[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 59%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: + inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp +[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: + inlined from 'toppic::DpPair::DpPair(int, int, double, double, int, int, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:30:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp +[ 60%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 60%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp +[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp +[ 60%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: + inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:57:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: + inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:79:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp +[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:16: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: + inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:71:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: + inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:73:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:74:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 60%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::PsAlign::backtrace()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:257:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: @@ -14593,8 +13488,6 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: @@ -14631,78 +13524,91 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 69%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 69%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include 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-DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 69%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o +[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp -[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-o CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp -[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::CompShiftLowMem::findBestShift(const std::vector >&, const std::vector&, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:40:21: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp +[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::PtmSlowMatch::addSuffixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:101:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::PtmSlowMatch::addPrefixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:74:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp +[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 61%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_dp_node.cpp +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp +[ 61%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp +[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -14714,87 +13620,249 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o.d 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -MF 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-Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: + inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:274:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: + inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:284:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: + inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:293:26: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/algorithm:61, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: +/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here + 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here + 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +[ 61%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:32:35: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:63:21, + inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:65:21, + inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:69:23, + inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::CompProbValue::compute(const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, int, int, bool, double, toppic::PeakTolerancePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:114:39: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp +In file included from /usr/include/c++/13/bits/stl_algo.h:61: +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::comp_prob_value_array::compProbArray(toppic::CompProbValuePtr, const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, const toppic::PrsmPtrVec&, bool, double, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:57:22: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:47:28: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:50:28: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:53:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:53:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:55:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:55:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp +[ 63%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: @@ -14818,70 +13886,95 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o +[ 63%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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_Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector > toppic::DprProcessor::compPtmComb()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:126:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 63%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp -[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp -[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:23: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::twoPtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, int, toppic::PtmPtr, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:556:27: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 64%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:319:24: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: + inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:322:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, @@ -14896,43 +13989,26 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o +[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o +[ 64%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp +[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm_reader.cpp -[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp -[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp +[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp -[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 65%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topdiff -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lpthread -lz -lhts +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:21: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::local_util::compMTable(const std::vector&, double, const std::vector&, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:107:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 65%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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[with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[ 65%] Building CXX object CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp: In function 'int main(int, char**)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 40 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:19: +/usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topmerge.dir/src/console/topmerge_argument.cpp.o -MF CMakeFiles/topmerge.dir/src/console/topmerge_argument.cpp.o.d -o CMakeFiles/topmerge.dir/src/console/topmerge_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_argument.cpp -[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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[with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o +[ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/mod_util.cpp.o.d -o 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/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/icon.qrc @@ -15070,47 +14260,111 @@ make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmerge_gui.dir/build.make CMakeFiles/topmerge_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' -[ 75%] Building CXX object CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o +[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/mocs_compilation.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/base_data.cpp.o +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +In file included from /usr/include/c++/13/bits/stl_algo.h:61, + from /usr/include/c++/13/algorithm:61, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': 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_RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); @@ -15120,8 +14374,12 @@ /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.cpp +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: @@ -15142,22 +14400,8 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -15211,68 +14455,157 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -[ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/neutral_loss_base.cpp.o +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 69%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -[ 75%] Building CXX object CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o +[ 69%] Building CXX object CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue_freq.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue_util.cpp.o +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topmerge.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/trunc_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/activation.cpp.o +In file included from /usr/include/c++/13/map:62, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: +/usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': +/usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 + 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/activation_base.cpp.o +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid.cpp.o -c 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ 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CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -15288,16 +14621,28 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: @@ -15305,28 +14650,145 @@ /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o +In file included from /usr/include/c++/13/bits/stl_algo.h:61, + from /usr/include/c++/13/algorithm:61, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: @@ -15347,10 +14809,18 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -15404,22 +14874,36 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: @@ -15533,38 +15017,64 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include 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CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -15573,18 +15083,16 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 78%] Building CXX object 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp -[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o +[ 73%] 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +[ 73%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 73%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -15645,12 +15140,40 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/dist.cpp -[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp -[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: @@ -15658,30 +15181,67 @@ /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +[ 73%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp -[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o +[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 79%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: @@ -15694,34 +15254,55 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 79%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o.d -o 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CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o +[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp -[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o +[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -[ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp -[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -[ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o +[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp -[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/dist.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: @@ -15770,6 +15357,13 @@ | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, @@ -15788,6 +15382,12 @@ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); @@ -15870,36 +15470,57 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o +[ 74%] Building CXX object 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o +[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include 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object CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o +[ 75%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 75%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include 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object CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o +[ 76%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 76%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: @@ -15913,7 +15534,11 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o +[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 77%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp +[ 77%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -15923,8 +15548,6 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: @@ -15938,76 +15561,84 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o +[ 77%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp +[ 77%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 77%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 77%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 77%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o +[ 77%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 77%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o 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CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:71:24: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:73:26: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:74:26: + inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ 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CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp -[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o +[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 78%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o 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CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, @@ -16024,8 +15655,10 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o +[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 78%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -16050,24 +15683,24 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o +[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:16: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 78%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:71:24: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:73:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:74:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, @@ -16097,30 +15762,38 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o +[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o.d -o 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp +[ 78%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ 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CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o +[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_dp_node.cpp +[ 79%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: @@ -16134,14 +15807,80 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o +[ 79%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp -[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +In file included from /usr/include/c++/13/vector:72, + from /usr/include/boost/math/special_functions/math_fwd.hpp:26, + from /usr/include/boost/math/special_functions/gamma.hpp:25, + from /usr/include/boost/math/distributions/poisson.hpp:40, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 79%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: +/usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: @@ -16155,16 +15894,50 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o +[ 79%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o +[ 79%] Building CXX object 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_refine.cpp.o +[ 79%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 79%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1037 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 79%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, @@ -16220,8 +15993,10 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -16237,14 +16012,14 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp +[ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: @@ -16258,6 +16033,8 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: @@ -16267,6 +16044,112 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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object CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include 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Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, @@ -16275,20 +16158,22 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ 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CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); @@ -16304,10 +16189,12 @@ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ -[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -16326,8 +16213,12 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp +[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': @@ -16385,120 +16276,40 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/spec_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector > toppic::DprProcessor::compPtmComb()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:126:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -16575,20 +16380,34 @@ /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 85%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /usr/include/c++/13/bits/random.h:34, + from /usr/include/c++/13/random:51, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:15: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector > toppic::DprProcessor::compPtmComb()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:126:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +[ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include 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CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o +[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o +[ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:23: @@ -16646,34 +16516,48 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp +[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, @@ -16691,58 +16575,62 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o +[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp +[ 88%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:21: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'void toppic::local_util::compMTable(const std::vector&, double, const std::vector&, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:107:26: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 89%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp -[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/ion_type_base.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o +[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ 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CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 88%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 88%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, @@ -16894,21 +16932,10 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 89%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp -[ 89%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: @@ -16962,136 +16989,142 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:21: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'void toppic::local_util::compMTable(const std::vector&, double, const std::vector&, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:107:26: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 88%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o +[ 88%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp -[ 89%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topconvert.dir/src/common/base/prot_mod.cpp.o +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp -[ 89%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/prot_mod_util.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ 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CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 88%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 89%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 89%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 89%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 89%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 89%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: + inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 90%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 90%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 90%] Building CXX object CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp [ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 90%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: @@ -17122,53 +17161,105 @@ /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp [ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -[ 90%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o +[ 91%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:21: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 91%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void toppic::sampleAlignTime(FeaturePrsmPtrVec&, FeaturePrsmPtrVec&, double, std::vector >&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:200:23: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void toppic::sampleAlignTime(FeaturePrsmPtrVec&, FeaturePrsmPtrVec&, double, std::vector >&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:205:25: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void toppic::sampleAlignTime(FeaturePrsmPtrVec&, FeaturePrsmPtrVec&, double, std::vector >&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:231:23: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 91%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o +[ 91%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 91%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o +[ 93%] Building CXX object 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included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: @@ -17282,40 +17373,60 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o +[ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +[ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp -[ 91%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ 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CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 92%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 92%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp -[ 92%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o +[ 93%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 93%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp +[ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -17324,6 +17435,56 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 93%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 93%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 93%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 93%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp -[ 93%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 93%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 93%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 93%] Building CXX object 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In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 93%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 93%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 93%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) 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-fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp -[ 93%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 94%] Building CXX object CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o +[ 94%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +[ 95%] Building CXX object CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -[ 94%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 94%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp -[ 94%] Building CXX object CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o +[ 95%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp +[ 96%] Building CXX object CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 94%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp +[ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: @@ -17472,8 +17604,10 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o +[ 96%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, @@ -17488,38 +17622,34 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o +[ 96%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: @@ -17552,74 +17680,29 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -In file included from /usr/include/c++/13/vector:72, - from 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[with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o +[ 96%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o +[ 96%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 95%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o +[ 96%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +make[3]: Leaving directory 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-/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 95%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -c 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp -[ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 98%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/deconv_peak.cpp.o 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: @@ -17908,8 +17946,6 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o @@ -17926,6 +17962,8 @@ /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -17937,8 +17975,6 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o @@ -17969,6 +18005,8 @@ /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp [100%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp +[100%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: @@ -17976,8 +18014,6 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[100%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: @@ -18031,7 +18067,7 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' dh_auto_test -O--buildsystem=cmake - rm -fr -- /tmp/dh-xdg-rundir-EesMJrgP + rm -fr -- /tmp/dh-xdg-rundir-dBssTF3e create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake @@ -18039,7 +18075,7 @@ rm -fr -- debian/.debhelper/generated/toppic/ debian/toppic/ debian/tmp/ debian/.debhelper/generated/toppic-common/ debian/toppic-common/ dh_auto_install -O--buildsystem=cmake install -m0755 -d /build/reproducible-path/toppic-1.5.3\+dfsg1/debian/tmp - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/toppic-1.5.3\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/toppic-1.5.3\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/toppic-1.5.3+dfsg1 -B/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -18063,758 +18099,758 @@ -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/bin/topmerge_gui -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/bin/topconvert -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/envcnn_models +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/envcnn_models/envcnn_2_block_model.json -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm0.txt --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm0.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm2.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm1.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm1.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm2.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm1.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm0.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm0.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm2.txt --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm1.txt --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm2.txt --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm1.txt --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/unimod_ptm.xml --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/theo_patt.txt --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/unimod_ptm.js --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/env_rescore_para.txt --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/mass_table.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm0.txt -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/XicCorrScore1.tsv +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/IntScore.tsv +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/AbuScore.tsv -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedIntScore.tsv +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/XicCorrScore1.tsv -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/XicCorrScore2.tsv +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedCorrScore.tsv -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/DistScore.tsv -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/CorrScore.tsv --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/AbuScore.tsv --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/IntScore.tsv -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedDistScore.tsv --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedCorrScore.tsv -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/protein.docx +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/proteoform.docx +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/UIHelper.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/aminoaciddistribution.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/rectBGColor.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/addIonsToGraph.js.html +-- Installing: 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Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/drawSvg.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/multiscan.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/prsmtohtml.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/prsmDataUtil.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/protein.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/navBar.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/index.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/calculateprefixandsuffixmass.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/coordinates_util.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/CalculatePrefixAndSuffixMass.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/MultiScan.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/topview.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/peakData.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/global.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/buttons.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/prsm.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-BoldItalic-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-LightItalic-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Regular-webfont.svg +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Bold-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Italic-webfont.woff +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Regular-webfont.eot +-- Installing: 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Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/scripts/linenumber.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/scripts/prettify +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/scripts/prettify/Apache-License-2.0.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/scripts/prettify/lang-css.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/scripts/prettify/prettify.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/styles +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/styles/prettify-tomorrow.css +-- Installing: 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Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/css/bootstrap.css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/css/bootstrap.min.css.map +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/css/bootstrap.css.map +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.min.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.js.map +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.min.js.map +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/dist/js/bootstrap.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/bootstrap/LICENSE +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/README.md +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/bower.json +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/jquery/external/sizzle +-- Installing: 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/build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionCheckBoxView.ts --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/css/inspect.css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/base.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/seqofexecution.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/index.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/index.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/seqofexecution.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/spectrum.html --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/example --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/example/setLocalStorage.js --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/spectrum_no_nav.html --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/envcnn_models --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/envcnn_models/envcnn_2_block_model.json +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/package-lock.json +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/index.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/prsm.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/protein.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/ms.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/css/ms.css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/css/prsm.css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/css/proteins.css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/css/FreeMono.ttf +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform/on_load_proteoform.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform/proteoform.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform/proteoform.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteoform/on_load_proteoform.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum/allSpectrum.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum/on_load_spectrum.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum/allSpectrum.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/spectrum/on_load_spectrum.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/prsm_to_html.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/inspect.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/button_action.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/prsm_to_html.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/load_spectra.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/load_spectra.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/inspect.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/on_load_prsm.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/button_action.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/prsm/on_load_prsm.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/protein +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/protein/on_load_protein.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/protein/protein.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/protein/on_load_protein.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/protein/protein.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins/on_load_proteins.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins/on_load_proteins.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins/allProteins.ts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/js/proteins/allProteins.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/proteins.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/visual/proteoform.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/tsconfig.json +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/LICENSE +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/package.json +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/theo_patt.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/unimod_ptm.xml +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/mass_table.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/env_rescore_para.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/unimod_ptm.js make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' dh_install -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/bin @@ -18831,10 +18867,10 @@ install -p -m0644 debian/copyright debian/toppic/usr/share/doc/toppic/copyright install -p -m0644 debian/copyright debian/toppic-common/usr/share/doc/toppic-common/copyright dh_installchangelogs -O--buildsystem=cmake - install -m0755 -d debian/toppic/usr/share/doc/toppic - install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common install -p -m0644 debian/.debhelper/generated/toppic-common/dh_installchangelogs.dch.trimmed debian/toppic-common/usr/share/doc/toppic-common/changelog.Debian + install -m0755 -d debian/toppic/usr/share/doc/toppic + install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian dh_installman -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topfd.1 debian/toppic/usr/share/man/man1/topfd.1 @@ -18844,14 +18880,18 @@ install -p -m0644 ./debian/topmg.1 debian/toppic/usr/share/man/man1/topmg.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topdiff.1 debian/toppic/usr/share/man/man1/topdiff.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 debian/toppic/usr/share/man/man1/topfd.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 debian/toppic/usr/share/man/man1/toppic.1 - mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 - mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1 - chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 debian/toppic/usr/share/man/man1/toppic.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/toppic.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1 + chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1 + mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 + chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 - chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1 debian/toppic/usr/share/man/man1/topfd.1 + chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1 + mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1 + chmod 0644 -- debian/toppic/usr/share/man/man1/toppic.1 dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake @@ -18893,33 +18933,33 @@ dh_strip_nondeterminism -O--buildsystem=cmake Using 1667166702 as canonical time Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/png.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/png.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake - cd debian/toppic-common cd debian/toppic + cd debian/toppic-common chmod a-x usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md chmod a-x usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 - gzip -9nf usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md gzip -9nf usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 + gzip -9nf usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md cd '/build/reproducible-path/toppic-1.5.3+dfsg1' cd '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_fixperms -O--buildsystem=cmake @@ -18929,10 +18969,10 @@ find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/lib/debug/.dwz/arm-linux-gnueabihf @@ -18945,66 +18985,66 @@ chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b9/5640d6b7c667efad28209b3453c10bc6a0ed6a.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b9/5640d6b7c667efad28209b3453c10bc6a0ed6a.debug debian/toppic/usr/bin/topmg_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug debian/toppic/usr/bin/toppic + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug debian/toppic/usr/bin/topindex + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug debian/toppic/usr/bin/topdiff_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topconvert debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topconvert + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug debian/toppic/usr/bin/topconvert install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/afa9ec4f3f158d027c72f2c9b598f4fcf3e476.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/afa9ec4f3f158d027c72f2c9b598f4fcf3e476.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/afa9ec4f3f158d027c72f2c9b598f4fcf3e476.debug debian/toppic/usr/bin/topfd - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug debian/toppic/usr/bin/topdiff + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug debian/toppic/usr/bin/topfd_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b0/4733f948a4288e3f71d1a333570fff8f9ac3d5.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b0/4733f948a4288e3f71d1a333570fff8f9ac3d5.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b0/4733f948a4288e3f71d1a333570fff8f9ac3d5.debug debian/toppic/usr/bin/topindex_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topconvert debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topconvert - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug debian/toppic/usr/bin/topconvert install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/24/503775ec5283266456fc8eaa3ab8d81768ffb0.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/24/503775ec5283266456fc8eaa3ab8d81768ffb0.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/24/503775ec5283266456fc8eaa3ab8d81768ffb0.debug debian/toppic/usr/bin/topmerge_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug debian/toppic/usr/bin/topdiff_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug debian/toppic/usr/bin/topmerge - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug debian/toppic/usr/bin/topfd_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug debian/toppic/usr/bin/topindex - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug debian/toppic/usr/bin/topmg + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug debian/toppic/usr/bin/topdiff + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug debian/toppic/usr/bin/toppic install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/00/adc919c9fb7f89c6abe59027c4ebfaa48add99.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/00/adc919c9fb7f89c6abe59027c4ebfaa48add99.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/00/adc919c9fb7f89c6abe59027c4ebfaa48add99.debug debian/toppic/usr/bin/toppic_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug debian/toppic/usr/bin/topmg + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug debian/toppic/usr/bin/topmerge install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/toppic/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/toppic/usr/lib/debug/.dwz @@ -19016,36 +19056,36 @@ rm -f debian/toppic/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN - dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topmg debian/toppic/usr/bin/toppic_gui -dpkg-shlibdeps: warning: debian/toppic/usr/bin/topfd_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/topconvert contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/topfd contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/toppic_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/topindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/toppic contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/topdiff_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmg_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmerge_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmerge contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin + dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/toppic debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topmerge dpkg-shlibdeps: warning: debian/toppic/usr/bin/topindex_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmerge_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmg contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/topdiff_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/toppic contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmg_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/toppic_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/topconvert contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topdiff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmerge contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/topfd contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/topfd_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/toppic/usr/bin/topindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN dh_gencontrol -O--buildsystem=cmake + install -m0755 -d debian/toppic-common/DEBIAN + echo misc:Depends= >> debian/toppic-common.substvars + echo misc:Pre-Depends= >> debian/toppic-common.substvars + dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common install -m0755 -d debian/toppic/DEBIAN echo misc:Depends= >> debian/toppic.substvars echo misc:Pre-Depends= >> debian/toppic.substvars install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/.debhelper/toppic/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=toppic-dbgsym "-DDepends=toppic (= \${binary:Version})" "-DDescription=debug symbols for toppic" "-DBuild-Ids=00adc919c9fb7f89c6abe59027c4ebfaa48add99 11e6c874abe22f634b41b1b98b822411257d749d 1ba3dedff5aba9715087f188147de3c2b8161e5d 24503775ec5283266456fc8eaa3ab8d81768ffb0 3528efd8968e4fb87572d62141eb601ee5f786c8 84f6b9ccedf70ea0cfe390444a6f6bb88d460581 a111bf19676994daf0d27579b72a4f4f6cbbca1c aa7de6d35e546f1747dfb42eee0c0ced156d8058 aebb23b7e726ca0065c656320378841cc311307c b04733f948a4288e3f71d1a333570fff8f9ac3d5 b95640d6b7c667efad28209b3453c10bc6a0ed6a e7afa9ec4f3f158d027c72f2c9b598f4fcf3e476 ecb8cda03f6725a514ba36216fd81d1861affa5d" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/toppic-common/DEBIAN - echo misc:Depends= >> debian/toppic-common.substvars - echo misc:Pre-Depends= >> debian/toppic-common.substvars - dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common + chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/toppic - chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/toppic/DEBIAN/control dh_md5sums -O--buildsystem=cmake install -m0755 -d debian/toppic-common/DEBIAN @@ -19055,15 +19095,15 @@ chmod 0644 -- debian/toppic/DEBIAN/md5sums install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN cd debian/.debhelper/toppic/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/toppic-common/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/toppic .. - dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. dpkg-deb --root-owner-group --build debian/toppic-common .. + dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. +dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_armhf.deb'. dpkg-deb: building package 'toppic' in '../toppic_1.5.3+dfsg1-1_armhf.deb'. dpkg-deb: building package 'toppic-common' in '../toppic-common_1.5.3+dfsg1-1_all.deb'. -dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../toppic_1.5.3+dfsg1-1_armhf.buildinfo dpkg-genchanges --build=binary -O../toppic_1.5.3+dfsg1-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -19071,12 +19111,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/15274/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/15274/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/28870 and its subdirectories -I: Current time: Sat May 11 22:36:21 -12 2024 -I: pbuilder-time-stamp: 1715510181 +I: removing directory /srv/workspace/pbuilder/15274 and its subdirectories +I: Current time: Mon May 13 02:20:12 +14 2024 +I: pbuilder-time-stamp: 1715516412