Diff of the two buildlogs: -- --- b1/build.log 2024-03-25 07:26:06.131912014 +0000 +++ b2/build.log 2024-03-25 07:34:06.519365058 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 24 19:12:07 -12 2024 -I: pbuilder-time-stamp: 1711350727 +I: Current time: Mon Mar 25 21:26:19 +14 2024 +I: pbuilder-time-stamp: 1711351579 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking scrm_1.7.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/32725/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/D01_modify_environment starting +debug: Running on ff64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 25 07:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='7fc60d1a4a5c43a491814e17774ba922' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='32725' - PS1='# ' - PS2='> ' + INVOCATION_ID=51cf746ee0874475a578561113837f0c + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=21256 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/pbuilderrc_gcwc --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/b1 --logfile b1/build.log scrm_1.7.4-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/pbuilderrc_BA7t --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/b2 --logfile b2/build.log scrm_1.7.4-1.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4a 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 24 11:27 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/32725/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 24 11:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -141,7 +173,7 @@ Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.14.1 [890 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libcppunit-1.15-0 armhf 1.15.1-4+b1 [140 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libcppunit-dev armhf 1.15.1-4+b1 [203 kB] -Fetched 18.7 MB in 1s (14.8 MB/s) +Fetched 18.7 MB in 1s (34.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19577 files and directories currently installed.) @@ -284,7 +316,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/scrm-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scrm_1.7.4-1_source.changes +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/scrm-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../scrm_1.7.4-1_source.changes dpkg-buildpackage: info: source package scrm dpkg-buildpackage: info: source version 1.7.4-1 dpkg-buildpackage: info: source distribution unstable @@ -387,11 +423,17 @@ config.status: creating Makefile config.status: executing depfiles commands dh_auto_build - make -j3 + make -j6 make[1]: Entering directory '/build/reproducible-path/scrm-1.7.4' g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-scrm.o `test -f 'src/scrm.cc' || echo './'`src/scrm.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-param.o `test -f 'src/param.cc' || echo './'`src/param.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-forest.o `test -f 'src/forest.cc' || echo './'`src/forest.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-node.o `test -f 'src/node.cc' || echo './'`src/node.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-node_container.o `test -f 'src/node_container.cc' || echo './'`src/node_container.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-time_interval.o `test -f 'src/time_interval.cc' || echo './'`src/time_interval.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-model.o `test -f 'src/model.cc' || echo './'`src/model.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-tree_point.o `test -f 'src/tree_point.cc' || echo './'`src/tree_point.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/scrm-random_generator.o `test -f 'src/random/random_generator.cc' || echo './'`src/random/random_generator.cc In file included from src/summary_statistics/../random/random_generator.h:32, from src/summary_statistics/../contemporaries_container.h:34, from src/summary_statistics/../forest.h:51, @@ -405,14 +447,9 @@ src/summary_statistics/../random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-node.o `test -f 'src/node.cc' || echo './'`src/node.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-node_container.o `test -f 'src/node_container.cc' || echo './'`src/node_container.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-time_interval.o `test -f 'src/time_interval.cc' || echo './'`src/time_interval.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-model.o `test -f 'src/model.cc' || echo './'`src/model.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-tree_point.o `test -f 'src/tree_point.cc' || echo './'`src/tree_point.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/scrm-random_generator.o `test -f 'src/random/random_generator.cc' || echo './'`src/random/random_generator.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/scrm-mersenne_twister.o `test -f 'src/random/mersenne_twister.cc' || echo './'`src/random/mersenne_twister.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/scrm-fastfunc.o `test -f 'src/random/fastfunc.cc' || echo './'`src/random/fastfunc.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-tmrca.o `test -f 'src/summary_statistics/tmrca.cc' || echo './'`src/summary_statistics/tmrca.cc In file included from src/random/random_generator.h:32, from src/random/random_generator.cc:23: src/random/fastfunc.h: In member function 'FastFunc::fastlog(double)': @@ -422,8 +459,9 @@ src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-tmrca.o `test -f 'src/summary_statistics/tmrca.cc' || echo './'`src/summary_statistics/tmrca.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-seg_sites.o `test -f 'src/summary_statistics/seg_sites.cc' || echo './'`src/summary_statistics/seg_sites.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-frequency_spectrum.o `test -f 'src/summary_statistics/frequency_spectrum.cc' || echo './'`src/summary_statistics/frequency_spectrum.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-newick_tree.o `test -f 'src/summary_statistics/newick_tree.cc' || echo './'`src/summary_statistics/newick_tree.cc In file included from src/random/random_generator.h:32, from src/random/mersenne_twister.h:28, from src/random/mersenne_twister.cc:23: @@ -434,8 +472,7 @@ src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-frequency_spectrum.o `test -f 'src/summary_statistics/frequency_spectrum.cc' || echo './'`src/summary_statistics/frequency_spectrum.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-newick_tree.o `test -f 'src/summary_statistics/newick_tree.cc' || echo './'`src/summary_statistics/newick_tree.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-oriented_forest.o `test -f 'src/summary_statistics/oriented_forest.cc' || echo './'`src/summary_statistics/oriented_forest.cc In file included from src/summary_statistics/../random/random_generator.h:32, from src/summary_statistics/../contemporaries_container.h:34, from src/summary_statistics/../forest.h:51, @@ -448,18 +485,20 @@ src/summary_statistics/../random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-oriented_forest.o `test -f 'src/summary_statistics/oriented_forest.cc' || echo './'`src/summary_statistics/oriented_forest.cc g++ -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wl,-z,relro -o scrm src/scrm-param.o src/scrm-forest.o src/scrm-node.o src/scrm-node_container.o src/scrm-time_interval.o src/scrm-model.o src/scrm-tree_point.o src/random/scrm-random_generator.o src/random/scrm-mersenne_twister.o src/random/scrm-fastfunc.o src/summary_statistics/scrm-tmrca.o src/summary_statistics/scrm-seg_sites.o src/summary_statistics/scrm-frequency_spectrum.o src/summary_statistics/scrm-newick_tree.o src/summary_statistics/scrm-oriented_forest.o src/scrm-scrm.o lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[1]: Leaving directory '/build/reproducible-path/scrm-1.7.4' dh_auto_test - make -j3 test "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 + make -j6 test "TESTSUITEFLAGS=-j6 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/scrm-1.7.4' g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-param.o `test -f 'src/param.cc' || echo './'`src/param.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-forest.o `test -f 'src/forest.cc' || echo './'`src/forest.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-node.o `test -f 'src/node.cc' || echo './'`src/node.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-node_container.o `test -f 'src/node_container.cc' || echo './'`src/node_container.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-time_interval.o `test -f 'src/time_interval.cc' || echo './'`src/time_interval.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-model.o `test -f 'src/model.cc' || echo './'`src/model.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-tree_point.o `test -f 'src/tree_point.cc' || echo './'`src/tree_point.cc In file included from /usr/include/c++/13/vector:72, from src/node_container.h:28, from src/node_container.cc:23: @@ -474,88 +513,8 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-time_interval.o `test -f 'src/time_interval.cc' || echo './'`src/time_interval.cc -In file included from /usr/include/c++/13/vector:72, - from src/forest.h:43, - from src/forest.cc:23: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, - inlined from 'void Forest::clear()' at src/forest.cc:1258:22: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, - inlined from 'void Forest::sampleNextBase()' at src/forest.cc:1353:18: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, - inlined from 'void Forest::sampleNextBase()' at src/forest.cc:1357:18: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'Node* NodeContainer::createNode(double, size_t)' at src/node_container.h:87:45: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, - inlined from 'void Forest::readNewick(std::string&)' at src/forest.cc:1327:22: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from src/param.h:26, - from src/param.cc:23: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, - inlined from 'void Forest::buildInitialTree()' at src/forest.cc:292:22: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'Model Param::parse()' at src/param.cc:214:38: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'Model Param::parse()' at src/param.cc:217:41: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-model.o `test -f 'src/model.cc' || echo './'`src/model.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-tree_point.o `test -f 'src/tree_point.cc' || echo './'`src/tree_point.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-random_generator.o `test -f 'src/random/random_generator.cc' || echo './'`src/random/random_generator.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-mersenne_twister.o `test -f 'src/random/mersenne_twister.cc' || echo './'`src/random/mersenne_twister.cc -In file included from src/random/random_generator.h:32, - from src/random/random_generator.cc:23: -src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': -src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] - 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float - | ~^~~~~~ -src/random/fastfunc.h:89:10: note: 'y' declared here - 89 | double y = x; - | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-fastfunc.o `test -f 'src/random/fastfunc.cc' || echo './'`src/random/fastfunc.cc In file included from /usr/include/c++/13/vector:72, from src/model.h:38, from src/model.cc:22: @@ -594,20 +553,11 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from src/random/random_generator.h:32, - from src/random/mersenne_twister.h:28, - from src/random/mersenne_twister.cc:23: -src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': -src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] - 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float - | ~^~~~~~ -src/random/fastfunc.h:89:10: note: 'y' declared here - 89 | double y = x; - | ^ src/model.cc: In member function 'size_t Model::addChangeTime(double, const bool&)': src/model.cc:109:23: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 109 | change_times_.insert(ti, time); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-fastfunc.o `test -f 'src/random/fastfunc.cc' || echo './'`src/random/fastfunc.cc In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Model::addPopulationSizes(double, const std::vector&, const bool&, const bool&)' at src/model.cc:208:40: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -623,8 +573,6 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-tmrca.o `test -f 'src/summary_statistics/tmrca.cc' || echo './'`src/summary_statistics/tmrca.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-seg_sites.o `test -f 'src/summary_statistics/seg_sites.cc' || echo './'`src/summary_statistics/seg_sites.cc /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -677,8 +625,97 @@ /usr/include/c++/13/bits/stl_vector.h:1391:30: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1391 | { return _M_insert_rval(__position, std::move(__x)); } | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from src/random/random_generator.h:32, + from src/random/random_generator.cc:23: +src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': +src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] + 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float + | ~^~~~~~ +src/random/fastfunc.h:89:10: note: 'y' declared here + 89 | double y = x; + | ^ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-tmrca.o `test -f 'src/summary_statistics/tmrca.cc' || echo './'`src/summary_statistics/tmrca.cc +In file included from src/random/random_generator.h:32, + from src/random/mersenne_twister.h:28, + from src/random/mersenne_twister.cc:23: +src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': +src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] + 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float + | ~^~~~~~ +src/random/fastfunc.h:89:10: note: 'y' declared here + 89 | double y = x; + | ^ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-seg_sites.o `test -f 'src/summary_statistics/seg_sites.cc' || echo './'`src/summary_statistics/seg_sites.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-frequency_spectrum.o `test -f 'src/summary_statistics/frequency_spectrum.cc' || echo './'`src/summary_statistics/frequency_spectrum.cc In file included from /usr/include/c++/13/vector:72, + from src/forest.h:43, + from src/forest.cc:23: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, + inlined from 'void Forest::clear()' at src/forest.cc:1258:22: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, + inlined from 'void Forest::sampleNextBase()' at src/forest.cc:1353:18: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, + inlined from 'void Forest::sampleNextBase()' at src/forest.cc:1357:18: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-newick_tree.o `test -f 'src/summary_statistics/newick_tree.cc' || echo './'`src/summary_statistics/newick_tree.cc +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'Node* NodeContainer::createNode(double, size_t)' at src/node_container.h:87:45: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, + inlined from 'void Forest::readNewick(std::string&)' at src/forest.cc:1327:22: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from src/param.h:26, + from src/param.cc:23: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, + inlined from 'void Forest::buildInitialTree()' at src/forest.cc:292:22: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'Model Param::parse()' at src/param.cc:214:38: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'Model Param::parse()' at src/param.cc:217:41: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, from src/summary_statistics/tmrca.h:28, from src/summary_statistics/tmrca.cc:22: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': @@ -699,6 +736,8 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-oriented_forest.o `test -f 'src/summary_statistics/oriented_forest.cc' || echo './'`src/summary_statistics/oriented_forest.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-constant_generator.o `test -f 'src/random/constant_generator.cc' || echo './'`src/random/constant_generator.cc In file included from src/summary_statistics/../random/random_generator.h:32, from src/summary_statistics/../contemporaries_container.h:34, from src/summary_statistics/../forest.h:51, @@ -711,7 +750,6 @@ src/summary_statistics/../random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-newick_tree.o `test -f 'src/summary_statistics/newick_tree.cc' || echo './'`src/summary_statistics/newick_tree.cc In file included from /usr/include/c++/13/vector:72, from src/summary_statistics/../forest.h:43: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': @@ -720,6 +758,7 @@ | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-forest-debug.o `test -f 'src/forest-debug.cc' || echo './'`src/forest-debug.cc In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void SegSites::calculate(const Forest&)' at src/summary_statistics/seg_sites.cc:35:23: @@ -738,8 +777,7 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-oriented_forest.o `test -f 'src/summary_statistics/oriented_forest.cc' || echo './'`src/summary_statistics/oriented_forest.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-constant_generator.o `test -f 'src/random/constant_generator.cc' || echo './'`src/random/constant_generator.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_time_interval.o `test -f 'tests/unittests/test_time_interval.cc' || echo './'`tests/unittests/test_time_interval.cc In file included from src/random/random_generator.h:32, from src/random/constant_generator.h:29, from src/random/constant_generator.cc:23: @@ -750,9 +788,9 @@ src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-forest-debug.o `test -f 'src/forest-debug.cc' || echo './'`src/forest-debug.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_time_interval.o `test -f 'tests/unittests/test_time_interval.cc' || echo './'`tests/unittests/test_time_interval.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_fastfunc.o `test -f 'tests/unittests/test_fastfunc.cc' || echo './'`tests/unittests/test_fastfunc.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_param.o `test -f 'tests/unittests/test_param.cc' || echo './'`tests/unittests/test_param.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_random_generator.o `test -f 'tests/unittests/test_random_generator.cc' || echo './'`tests/unittests/test_random_generator.cc src/forest-debug.cc: In member function 'bool Forest::checkInvariants(const Node*) const': src/forest-debug.cc:172:14: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 172 | okay *= checkInvariants(*it); @@ -773,6 +811,7 @@ src/forest-debug.cc:260:10: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 260 | good *= this->checkRoots(); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_summary_statistics.o `test -f 'tests/unittests/test_summary_statistics.cc' || echo './'`tests/unittests/test_summary_statistics.cc In file included from tests/unittests/test_fastfunc.cc:4: tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] @@ -782,6 +821,16 @@ 89 | double y = x; | ^ In file included from tests/unittests/../../src/random/random_generator.h:32, + from tests/unittests/../../src/random/mersenne_twister.h:28, + from tests/unittests/test_random_generator.cc:6: +tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': +tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] + 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float + | ~^~~~~~ +tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here + 89 | double y = x; + | ^ +In file included from tests/unittests/../../src/random/random_generator.h:32, from tests/unittests/../../src/contemporaries_container.h:34, from tests/unittests/../../src/forest.h:51, from tests/unittests/test_time_interval.cc:7: @@ -792,7 +841,7 @@ tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_param.o `test -f 'tests/unittests/test_param.cc' || echo './'`tests/unittests/test_param.cc +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_contemporaries_container.o `test -f 'tests/unittests/test_contemporaries_container.cc' || echo './'`tests/unittests/test_contemporaries_container.cc In file included from /usr/include/c++/13/vector:72, from src/forest.h:43, from src/forest-debug.cc:19: @@ -816,6 +865,17 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from tests/unittests/../../src/random/random_generator.h:32, + from tests/unittests/../../src/contemporaries_container.h:34, + from tests/unittests/../../src/forest.h:51, + from tests/unittests/test_summary_statistics.cc:9: +tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': +tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] + 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float + | ~^~~~~~ +tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here + 89 | double y = x; + | ^ In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, @@ -825,36 +885,14 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_forest.o `test -f 'tests/unittests/test_forest.cc' || echo './'`tests/unittests/test_forest.cc In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_random_generator.o `test -f 'tests/unittests/test_random_generator.cc' || echo './'`tests/unittests/test_random_generator.cc -In file included from tests/unittests/../../src/random/random_generator.h:32, - from tests/unittests/../../src/random/mersenne_twister.h:28, - from tests/unittests/test_random_generator.cc:6: -tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': -tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] - 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float - | ~^~~~~~ -tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here - 89 | double y = x; - | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_summary_statistics.o `test -f 'tests/unittests/test_summary_statistics.cc' || echo './'`tests/unittests/test_summary_statistics.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_contemporaries_container.o `test -f 'tests/unittests/test_contemporaries_container.cc' || echo './'`tests/unittests/test_contemporaries_container.cc -In file included from tests/unittests/../../src/random/random_generator.h:32, - from tests/unittests/../../src/contemporaries_container.h:34, - from tests/unittests/../../src/forest.h:51, - from tests/unittests/test_summary_statistics.cc:9: -tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': -tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] - 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float - | ~^~~~~~ -tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here - 89 | double y = x; - | ^ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_model.o `test -f 'tests/unittests/test_model.cc' || echo './'`tests/unittests/test_model.cc In file included from tests/unittests/../../src/random/random_generator.h:32, from tests/unittests/../../src/contemporaries_container.h:34, from tests/unittests/test_contemporaries_container.cc:4: @@ -876,21 +914,6 @@ | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from /usr/include/c++/13/vector:72, - from /usr/include/c++/13/functional:64, - from /usr/include/cppunit/TestCaller.h:7, - from /usr/include/cppunit/extensions/HelperMacros.h:9, - from tests/unittests/test_contemporaries_container.cc:2: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, @@ -898,6 +921,17 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from tests/unittests/../../src/random/random_generator.h:32, + from tests/unittests/../../src/contemporaries_container.h:34, + from tests/unittests/../../src/forest.h:51, + from tests/unittests/test_forest.cc:3: +tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': +tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] + 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float + | ~^~~~~~ +tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here + 89 | double y = x; + | ^ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testNewickTree()' at tests/unittests/test_summary_statistics.cc:303:26: @@ -922,6 +956,21 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from /usr/include/c++/13/functional:64, + from /usr/include/cppunit/TestCaller.h:7, + from /usr/include/cppunit/extensions/HelperMacros.h:9, + from tests/unittests/test_contemporaries_container.cc:2: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testSiteFrequencies()' at tests/unittests/test_summary_statistics.cc:203:26: @@ -958,6 +1007,7 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_node.o `test -f 'tests/unittests/test_node.cc' || echo './'`tests/unittests/test_node.cc In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testSegSitesCalculate()' at tests/unittests/test_summary_statistics.cc:139:26: @@ -982,20 +1032,16 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_forest.o `test -f 'tests/unittests/test_forest.cc' || echo './'`tests/unittests/test_forest.cc -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_model.o `test -f 'tests/unittests/test_model.cc' || echo './'`tests/unittests/test_model.cc -In file included from tests/unittests/../../src/random/random_generator.h:32, - from tests/unittests/../../src/contemporaries_container.h:34, - from tests/unittests/../../src/forest.h:51, - from tests/unittests/test_forest.cc:3: -tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': -tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] - 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float - | ~^~~~~~ -tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here - 89 | double y = x; - | ^ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_node.o `test -f 'tests/unittests/test_node.cc' || echo './'`tests/unittests/test_node.cc +In file included from /usr/include/c++/13/vector:72, + from /usr/include/c++/13/functional:64, + from /usr/include/cppunit/TestCaller.h:7, + from /usr/include/cppunit/extensions/HelperMacros.h:9, + from tests/unittests/test_model.cc:7: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_node_container.o `test -f 'tests/unittests/test_node_container.cc' || echo './'`tests/unittests/test_node_container.cc In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, @@ -1013,15 +1059,6 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /usr/include/c++/13/functional:64, - from /usr/include/cppunit/TestCaller.h:7, - from /usr/include/cppunit/extensions/HelperMacros.h:9, - from tests/unittests/test_model.cc:7: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, @@ -1035,21 +1072,6 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /usr/include/c++/13/functional:64, - from /usr/include/cppunit/TestCaller.h:7, - from /usr/include/cppunit/extensions/HelperMacros.h:9, - from tests/unittests/test_node.cc:5: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testCopyConstructor()' at tests/unittests/test_forest.cc:805:26: @@ -1080,6 +1102,37 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from /usr/include/c++/13/functional:64, + from /usr/include/cppunit/TestCaller.h:7, + from /usr/include/cppunit/extensions/HelperMacros.h:9, + from tests/unittests/test_node.cc:5: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/cppunit/unit_tests-test_runner.o `test -f 'tests/cppunit/test_runner.cc' || echo './'`tests/cppunit/test_runner.cc +In file included from /usr/include/c++/13/vector:72, + from /usr/include/c++/13/functional:64, + from /usr/include/cppunit/TestCaller.h:7, + from /usr/include/cppunit/extensions/HelperMacros.h:9, + from tests/unittests/test_node_container.cc:6: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testSampleEventType()' at tests/unittests/test_forest.cc:326:27: @@ -1122,19 +1175,6 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, - inlined from 'void TestForest::testPrune()' at tests/unittests/test_forest.cc:535:26: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, - inlined from 'void TestForest::testPrune()' at tests/unittests/test_forest.cc:572:26: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_node_container.o `test -f 'tests/unittests/test_node_container.cc' || echo './'`tests/unittests/test_node_container.cc In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testAddPopulationSizes()' at tests/unittests/test_model.cc:164:25: @@ -1149,6 +1189,18 @@ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, + inlined from 'void TestForest::testPrune()' at tests/unittests/test_forest.cc:535:26: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, + inlined from 'void TestForest::testPrune()' at tests/unittests/test_forest.cc:572:26: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testNodeIsOld()' at tests/unittests/test_forest.cc:489:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); @@ -1171,22 +1223,6 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /usr/include/c++/13/functional:64, - from /usr/include/cppunit/TestCaller.h:7, - from /usr/include/cppunit/extensions/HelperMacros.h:9, - from tests/unittests/test_node_container.cc:6: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/cppunit/unit_tests-test_runner.o `test -f 'tests/cppunit/test_runner.cc' || echo './'`tests/cppunit/test_runner.cc g++ -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wl,-z,relro -o unit_tests src/unit_tests-param.o src/unit_tests-forest.o src/unit_tests-node.o src/unit_tests-node_container.o src/unit_tests-time_interval.o src/unit_tests-model.o src/unit_tests-tree_point.o src/random/unit_tests-random_generator.o src/random/unit_tests-mersenne_twister.o src/random/unit_tests-fastfunc.o src/summary_statistics/unit_tests-tmrca.o src/summary_statistics/unit_tests-seg_sites.o src/summary_statistics/unit_tests-frequency_spectrum.o src/summary_statistics/unit_tests-newick_tree.o src/summary_statistics/unit_tests-oriented_forest.o src/random/unit_tests-constant_generator.o src/unit_tests-forest-debug.o tests/unittests/unit_tests-test_forest.o tests/unittests/unit_tests-test_model.o tests/unittests/unit_tests-test_node.o tests/unittests/unit_tests-test_node_container.o tests/cppunit/unit_tests-test_runner.o tests/unittests/unit_tests-test_time_interval.o tests/unittests/unit_tests-test_fastfunc.o tests/unittests/unit_tests-test_param.o tests/unittests/unit_tests-test_random_generator.o tests/unittests/unit_tests-test_summary_statistics.o tests/unittests/unit_tests-test_contemporaries_container.o -L/opt/local/lib -lcppunit -ldl ./unit_tests TestContemporariesContainer::add : OK @@ -1305,14 +1341,14 @@ TestTimeInterval::testFindContemporaries : OK OK (114) make[1]: Leaving directory '/build/reproducible-path/scrm-1.7.4' - rm -fr -- /tmp/dh-xdg-rundir-kCrbtYb6 + rm -fr -- /tmp/dh-xdg-rundir-RENrBSq9 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/scrm.substvars rm -fr -- debian/.debhelper/generated/scrm/ debian/scrm/ debian/tmp/ dh_auto_install --destdir=debian/scrm/ install -m0755 -d /build/reproducible-path/scrm-1.7.4/debian/scrm - make -j3 install DESTDIR=/build/reproducible-path/scrm-1.7.4/debian/scrm AM_UPDATE_INFO_DIR=no + make -j6 install DESTDIR=/build/reproducible-path/scrm-1.7.4/debian/scrm AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/scrm-1.7.4' make[2]: Entering directory '/build/reproducible-path/scrm-1.7.4' /usr/bin/mkdir -p '/build/reproducible-path/scrm-1.7.4/debian/scrm/usr/bin' @@ -1408,12 +1444,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/21256/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/32725 and its subdirectories -I: Current time: Sun Mar 24 19:26:01 -12 2024 -I: pbuilder-time-stamp: 1711351561 +I: removing directory /srv/workspace/pbuilder/21256 and its subdirectories +I: Current time: Mon Mar 25 21:34:01 +14 2024 +I: pbuilder-time-stamp: 1711352041