Diff of the two buildlogs: -- --- b1/build.log 2024-06-04 07:33:08.006932612 +0000 +++ b2/build.log 2024-06-04 07:37:45.627108253 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 3 19:27:16 -12 2024 -I: pbuilder-time-stamp: 1717486036 +I: Current time: Tue Jun 4 21:34:33 +14 2024 +I: pbuilder-time-stamp: 1717486473 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/22242/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/16013/tmp/hooks/D01_modify_environment starting +debug: Running on virt32z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 4 07:34 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/16013/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/16013/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='122f6fee53bb418b88ca8fdb693fc3c6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='22242' - PS1='# ' - PS2='> ' + INVOCATION_ID=27d7a8c0b7014896a64dd381c93fc327 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=16013 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.caQzbqEO/pbuilderrc_okp5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.caQzbqEO/b1 --logfile b1/build.log scrappie_1.4.2-8.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.caQzbqEO/pbuilderrc_4MbW --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.caQzbqEO/b2 --logfile b2/build.log scrappie_1.4.2-8.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64b 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 2 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/22242/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 1 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/16013/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -197,7 +229,7 @@ Get: 76 http://deb.debian.org/debian trixie/main armhf libopenblas-pthread-dev armhf 0.3.27+ds-2 [2243 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libopenblas-dev armhf 0.3.27+ds-2 [52.3 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libsimde-dev all 0.8.2-1 [465 kB] -Fetched 43.2 MB in 1s (50.0 MB/s) +Fetched 43.2 MB in 1s (65.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19444 files and directories currently installed.) @@ -531,7 +563,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scrappie_1.4.2-8_source.changes +I: user script /srv/workspace/pbuilder/16013/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/16013/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../scrappie_1.4.2-8_source.changes dpkg-buildpackage: info: source package scrappie dpkg-buildpackage: info: source version 1.4.2-8 dpkg-buildpackage: info: source distribution unstable @@ -608,7 +644,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/scrappie-1.4.2' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -617,8 +653,8 @@ make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' -make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' cd /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/CMakeFiles/scrappie_objects.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' cd /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/CMakeFiles/test_interface.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' @@ -626,24 +662,24 @@ make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' -[ 5%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o +[ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o [ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/decode.c.o -MF CMakeFiles/scrappie_objects.dir/src/decode.c.o.d -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/reproducible-path/scrappie-1.4.2/src/decode.c /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/test_interface.dir/src/test_interface.c.o -MF CMakeFiles/test_interface.dir/src/test_interface.c.o.d -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test_interface.c /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -MF CMakeFiles/scrappie_objects.dir/src/event_detection.c.o.d -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/reproducible-path/scrappie-1.4.2/src/event_detection.c -[ 10%] Linking C executable test_interface -/usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/layers.c -make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' -[ 13%] Built target test_interface [ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o +[ 15%] Linking C executable test_interface +/usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/networks.c.o -MF CMakeFiles/scrappie_objects.dir/src/networks.c.o.d -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/reproducible-path/scrappie-1.4.2/src/networks.c -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface +make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' +[ 15%] Built target test_interface +[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c +[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_common.c [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c @@ -680,19 +716,26 @@ make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' -[ 42%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -[ 42%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o +[ 39%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o +[ 39%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o [ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie.c.o -MF CMakeFiles/scrappie.dir/src/scrappie.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie.c +[ 44%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_test_runner.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_events.c -[ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o +[ 47%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_mappy.c +[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_map_to_sequence.c -[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o +[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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/build/reproducible-path/scrappie-1.4.2/src/scrappie_squiggle.c +[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_util.c -[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o +[ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_subcommands.c In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/arm-linux-gnueabihf/13/include/stdint.h:9, @@ -706,10 +749,13 @@ /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_mappy.c -[ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_seqmappy.c -[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o +[ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration 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-D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/fast5_interface.c.o -MF CMakeFiles/scrappie.dir/src/fast5_interface.c.o.d -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/fast5_interface.c +[ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c +[ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/math.h:27, @@ -717,22 +763,8 @@ /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -[ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_squiggle.c -[ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_subcommands.c -[ 65%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_help.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_help.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_help.c -[ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o +[ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_convolution.c -[ 71%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/fast5_interface.c.o -MF CMakeFiles/scrappie.dir/src/fast5_interface.c.o.d -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/fast5_interface.c -[ 73%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c -[ 76%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_skeleton.c -[ 78%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_decoding.c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); @@ -740,6 +772,10 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu +[ 76%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_skeleton.c +[ 78%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_decoding.c [ 81%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm @@ -770,10 +806,10 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/scrappie-1.4.2' dh_auto_test - cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 + cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j3 +/usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf @@ -801,6 +837,12 @@ 3: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "raw" "--model" "raw_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" 3: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf 3: Test timeout computed to be: 10000000 +test 4 + Start 4: test_rawrgrgr_r94_call + +4: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "raw" "--model" "rgrgr_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +4: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +4: Test timeout computed to be: 10000000 1: 1: 1: CUnit - A unit testing framework for C - Version 2.1-3 @@ -882,7 +924,10 @@ 1: 1: passed 1: Test: Test mapping -- viterbi ...passed +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- forward ...passed +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175533, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- viterbi with path ...Viterbi mapping path 1: 0, 0, 0, 0, 0, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3 1: , 3, 4, 4, 4, 5, 5, 6, 6, 6, 6, 7, 7, 8, 8, 8, 8, 8, 9, 9, 9 @@ -941,20 +986,44 @@ 1: passed 1: Test: Test mapping -- Viterbi with full band equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175533, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } +4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273347, "nevent" : 16122, "sequence_length" : 9412, "events_per_base" : 1.712920 } 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed +3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA + 1/19 Test #3: test_raw_call .................... Passed 17.11 sec +test 5 + Start 5: test_rawrgrgr_r941_call + +5: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "raw" "--model" "rgrgr_r941" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +5: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +5: Test timeout computed to be: 10000000 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed +4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG + 2/19 Test #4: test_rawrgrgr_r94_call ........... Passed 18.56 sec +test 6 + Start 6: test_rawrgrgr_r10_call + +6: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +6: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +6: Test timeout computed to be: 10000000 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 @@ -1181,59 +1250,18 @@ 1: tests 71 71 71 0 0 1: asserts 506 506 506 0 n/a 1: -1: Elapsed time = 15.566 seconds - 1/19 Test #1: unittest ......................... Passed 19.37 sec -test 4 - Start 4: test_rawrgrgr_r94_call - -4: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "raw" "--model" "rgrgr_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -4: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -4: Test timeout computed to be: 10000000 -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } -3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273347, "nevent" : 16122, "sequence_length" : 9412, "events_per_base" : 1.712920 } -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459902, "nevent" : 5787, "sequence_length" : 1695, "events_per_base" : 3.414159 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA - 2/19 Test #2: test_events_call ................. Passed 57.43 sec - 3/19 Test #3: test_raw_call .................... Passed 57.43 sec -test 5 - Start 5: test_rawrgrgr_r941_call - -5: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "raw" "--model" "rgrgr_r941" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -5: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -5: Test timeout computed to be: 10000000 -test 6 - Start 6: test_rawrgrgr_r10_call - -6: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -6: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -6: Test timeout computed to be: 10000000 -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 -4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } -5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG - 4/19 Test #5: test_rawrgrgr_r941_call .......... Passed 39.25 sec +1: Elapsed time = 12.420 seconds + 3/19 Test #1: unittest ......................... Passed 20.21 sec test 7 Start 7: test_rawrnnrf_r94_call 7: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "raw" "--model" "rnnrf_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" 7: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf 7: Test timeout computed to be: 10000000 -4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG - 5/19 Test #4: test_rawrgrgr_r94_call ........... Passed 39.70 sec +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459902, "nevent" : 5787, "sequence_length" : 1695, "events_per_base" : 3.414159 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA + 4/19 Test #2: test_events_call ................. Passed 20.49 sec test 8 Start 8: test_event_table @@ -13639,7 +13667,7 @@ 8: 12394 64075 54.637299 0.944376 3 8: 12395 64078 52.637016 1.520129 5 8: 12396 64083 61.066772 1.247263 7 - 6/19 Test #8: test_event_table ................. Passed 0.58 sec + 5/19 Test #8: test_event_table ................. Passed 0.70 sec test 9 Start 9: test_mappy @@ -78043,13 +78071,16 @@ 9: 64392 59.267578 0 C 0.041604 0.315691 0.652851 9: 64393 58.711945 0 C 0.041604 0.315691 0.652851 9: 64394 57.415466 0 C 0.041604 0.315691 0.652851 - 7/19 Test #9: test_mappy ....................... Passed 13.73 sec + 6/19 Test #9: test_mappy ....................... Passed 4.17 sec test 10 Start 10: test_seqmappy 10: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "seqmappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" 10: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf 10: Test timeout computed to be: 10000000 +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } +5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.232422 over 12818 blocks (0.903513 per block) 10: block pos 10: 0 -1 @@ -90870,13 +90901,14 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 - 8/19 Test #10: test_seqmappy .................... Passed 12.68 sec + 7/19 Test #10: test_seqmappy .................... Passed 8.74 sec test 11 Start 11: test_squiggle_r94 11: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "squiggle" "--model" "squiggle_r94" "/build/reproducible-path/scrappie-1.4.2/reads/test_squiggles.fa" 11: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf 11: Test timeout computed to be: 10000000 +6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 11: #one 11: pos base current sd dwell 11: 0 T -0.010010 0.502173 1.176593 @@ -96016,13 +96048,23 @@ 11: 603 G -0.348534 0.163240 9.530728 11: 604 C 0.161046 0.266937 15.063363 11: 605 T 0.194787 0.502125 16.019983 - 9/19 Test #11: test_squiggle_r94 ................ Passed 0.79 sec + 8/19 Test #11: test_squiggle_r94 ................ Passed 2.76 sec test 12 Start 12: test_squiggle_r10 12: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "squiggle" "--model" "squiggle_r10" "/build/reproducible-path/scrappie-1.4.2/reads/test_squiggles.fa" 12: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf 12: Test timeout computed to be: 10000000 +5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG + 9/19 Test #5: test_rawrgrgr_r941_call .......... Passed 21.00 sec +test 13 + Start 13: test_licence + +13: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "license" +13: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +13: Test timeout computed to be: 10000000 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499834 0.755774 @@ -99533,6 +99575,24 @@ 12: 924 G 1.467776 0.122657 8.328823 12: 925 T 1.156435 0.141427 7.031790 12: 926 A 0.296050 0.161997 7.324443 +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. +10/19 Test #13: test_licence ..................... Passed 0.21 sec +test 14 + Start 14: test_help + +14: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" +14: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +14: Test timeout computed to be: 10000000 12: 927 C -0.836542 0.154324 7.840771 12: 928 T 0.824620 0.159619 7.303357 12: 929 T 1.516868 0.156615 7.500086 @@ -101162,31 +101222,13 @@ 12: 603 G -0.572062 0.335164 12.230332 12: 604 C 0.561030 0.467363 9.792214 12: 605 T -0.235200 0.581865 6.671800 -10/19 Test #12: test_squiggle_r10 ................ Passed 0.50 sec -test 13 - Start 13: test_licence - -13: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "license" -13: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -13: Test timeout computed to be: 10000000 -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. -11/19 Test #13: test_licence ..................... Passed 0.02 sec -test 14 - Start 14: test_help +11/19 Test #12: test_squiggle_r10 ................ Passed 1.52 sec +test 15 + Start 15: test_help_events -14: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" -14: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -14: Test timeout computed to be: 10000000 +15: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" "events" +15: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +15: Test timeout computed to be: 10000000 14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies 14: Limited Research Algorithms group. 14: @@ -101211,13 +101253,13 @@ 14: such, may change drastically between releases and breaks backwards 14: compatibility. Newer versions may drop support of current features or change their 14: behaviour. -12/19 Test #14: test_help ........................ Passed 0.03 sec -test 15 - Start 15: test_help_events +12/19 Test #14: test_help ........................ Passed 0.09 sec +test 16 + Start 16: test_help_event_table -15: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" "events" -15: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -15: Test timeout computed to be: 10000000 +16: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" "event_table" +16: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +16: Test timeout computed to be: 10000000 15: Usage: events [OPTION...] fast5 [fast5 ...] 15: Scrappie basecaller -- basecall via events 15: @@ -101252,13 +101294,6 @@ 15: for any corresponding short options. 15: 15: Report bugs to . -13/19 Test #15: test_help_events ................. Passed 0.03 sec -test 16 - Start 16: test_help_event_table - -16: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" "event_table" -16: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -16: Test timeout computed to be: 10000000 16: Usage: event_table [OPTION...] fast5 [fast5 ...] 16: Scrappie basecaller -- basecall via events 16: @@ -101276,13 +101311,20 @@ 16: for any corresponding short options. 16: 16: Report bugs to . -14/19 Test #16: test_help_event_table ............ Passed 0.03 sec +13/19 Test #15: test_help_events ................. Passed 0.06 sec +14/19 Test #16: test_help_event_table ............ Passed 0.05 sec test 17 Start 17: test_help_raw 17: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" "raw" 17: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf 17: Test timeout computed to be: 10000000 +test 18 + Start 18: test_help_squiggle + +18: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" "squiggle" +18: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +18: Test timeout computed to be: 10000000 17: Usage: raw [OPTION...] fast5 [fast5 ...] 17: Scrappie basecaller -- basecall from raw signal 17: @@ -101320,13 +101362,13 @@ 17: for any corresponding short options. 17: 17: Report bugs to . -15/19 Test #17: test_help_raw .................... Passed 0.05 sec -test 18 - Start 18: test_help_squiggle +15/19 Test #17: test_help_raw .................... Passed 0.03 sec +test 19 + Start 19: test_version -18: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "help" "squiggle" -18: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -18: Test timeout computed to be: 10000000 +19: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "version" +19: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf +19: Test timeout computed to be: 10000000 18: Usage: squiggle [OPTION...] fasta [fasta ...] 18: Scrappie squiggler 18: @@ -101345,33 +101387,27 @@ 18: for any corresponding short options. 18: 18: Report bugs to . -16/19 Test #18: test_help_squiggle ............... Passed 0.07 sec -test 19 - Start 19: test_version - -19: Test command: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf/scrappie "version" -19: Working Directory: /build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf -19: Test timeout computed to be: 10000000 +16/19 Test #18: test_help_squiggle ............... Passed 0.04 sec 19: scrappie 1.4.0- -17/19 Test #19: test_version ..................... Passed 0.06 sec +17/19 Test #19: test_version ..................... Passed 0.04 sec +7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225830, "nsample" : 81106, "trim" : [ 200, 80990 ] } 6: TCTGGTTTTTTATTATGTTTTATCTTCCATA 6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } 6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 79.94 sec -7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 36.10 sec 7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } 7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA 7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } 7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 105.29 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 51.56 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 201.98 sec +Total Test time (real) = 71.78 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' - rm -fr -- /tmp/dh-xdg-rundir-TsVyfeFN + rm -fr -- /tmp/dh-xdg-rundir-fOXDcqrh make[1]: Leaving directory '/build/reproducible-path/scrappie-1.4.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -101383,7 +101419,7 @@ make[1]: Entering directory '/build/reproducible-path/scrappie-1.4.2' dh_auto_install install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -101481,12 +101517,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/16013/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/16013/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/22242 and its subdirectories -I: Current time: Mon Jun 3 19:32:44 -12 2024 -I: pbuilder-time-stamp: 1717486364 +I: removing directory /srv/workspace/pbuilder/16013 and its subdirectories +I: Current time: Tue Jun 4 21:37:28 +14 2024 +I: pbuilder-time-stamp: 1717486648