Diff of the two buildlogs: -- --- b1/build.log 2024-12-25 22:24:41.153845550 +0000 +++ b2/build.log 2024-12-25 22:56:54.505907120 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 25 09:55:18 -12 2024 -I: pbuilder-time-stamp: 1735163718 +I: Current time: Thu Dec 26 12:25:26 +14 2024 +I: pbuilder-time-stamp: 1735165526 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/32630/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/23063/tmp/hooks/D01_modify_environment starting +debug: Running on ff64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 25 22:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/23063/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/23063/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='6c077aa2fd0d4ce9b7201dbc73a0d996' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='32630' - PS1='# ' - PS2='> ' + INVOCATION_ID=8250c84d54d84552a2e1b1552031dfab + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=23063 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KQnUbL2F/pbuilderrc_XYt0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KQnUbL2F/b1 --logfile b1/build.log ray_2.3.1-9.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KQnUbL2F/pbuilderrc_M38e --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KQnUbL2F/b2 --logfile b2/build.log ray_2.3.1-9.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4a 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/32630/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/23063/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -171,7 +203,7 @@ Get: 48 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] -Fetched 35.4 MB in 6s (6190 kB/s) +Fetched 35.4 MB in 4s (9460 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19681 files and directories currently installed.) @@ -389,7 +421,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ray-2.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ray_2.3.1-9_source.changes +I: user script /srv/workspace/pbuilder/23063/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/23063/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ray-2.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ray_2.3.1-9_source.changes dpkg-buildpackage: info: source package ray dpkg-buildpackage: info: source version 2.3.1-9 dpkg-buildpackage: info: source distribution unstable @@ -401,11 +437,11 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ray-2.3.1' dh_auto_clean -- CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include " HAVE_LIBZ=y HAVE_LIBBZ2=y - make -j3 clean "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include " HAVE_LIBZ=y HAVE_LIBBZ2=y + make -j6 clean "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include " HAVE_LIBZ=y HAVE_LIBBZ2=y make[2]: Entering directory '/build/reproducible-path/ray-2.3.1' -make -w -j3 --jobserver-auth=3,4 -C RayPlatform clean +make -w -j6 --jobserver-auth=3,4 -C RayPlatform clean make[3]: Entering directory '/build/reproducible-path/ray-2.3.1' -make[3]: warning: -j3 forced in submake: resetting jobserver mode. +make[3]: warning: -j6 forced in submake: resetting jobserver mode. echo CLEAN RayPlatform CLEAN RayPlatform rm -f libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o @@ -426,17 +462,32 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/ray-2.3.1' dh_auto_build -- MPICXX='arm-linux-gnueabihf-g++' CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include " DEBLDFLAGS="-Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y - make -j3 "INSTALL=install --strip-program=true" MPICXX=arm-linux-gnueabihf-g\+\+ "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include " "DEBLDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y + make -j6 "INSTALL=install --strip-program=true" MPICXX=arm-linux-gnueabihf-g\+\+ "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include " "DEBLDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make[2]: Entering directory '/build/reproducible-path/ray-2.3.1' echo " CXX code/application_core/ray_main.o" echo " CXX code/Amos/Amos.o" CXX code/application_core/ray_main.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o - CXX code/Amos/Amos.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Amos/Amos.cpp -o code/Amos/Amos.o echo " CXX code/CoverageGatherer/CoverageGatherer.o" + CXX code/Amos/Amos.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o CXX code/CoverageGatherer/CoverageGatherer.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Amos/Amos.cpp -o code/Amos/Amos.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageGatherer.cpp -o code/CoverageGatherer/CoverageGatherer.o +echo " CXX code/CoverageGatherer/CoverageDistribution.o" +echo " CXX code/EdgePurger/EdgePurger.o" + CXX code/CoverageGatherer/CoverageDistribution.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageDistribution.cpp -o code/CoverageGatherer/CoverageDistribution.o + CXX code/EdgePurger/EdgePurger.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o +echo " CXX code/EdgePurger/EdgePurgerWorker.o" + CXX code/EdgePurger/EdgePurgerWorker.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurgerWorker.cpp -o code/EdgePurger/EdgePurgerWorker.o +echo " CXX code/Example/Example.o" + CXX code/Example/Example.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o +echo " CXX code/FusionData/FusionData.o" + CXX code/FusionData/FusionData.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o In file included from /usr/include/c++/14/map:62, from ./code/Mock/Parameters.h:29, from code/CoverageGatherer/CoverageGatherer.h:25, @@ -464,21 +515,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/CoverageGatherer/CoverageDistribution.o" - CXX code/CoverageGatherer/CoverageDistribution.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageDistribution.cpp -o code/CoverageGatherer/CoverageDistribution.o -echo " CXX code/EdgePurger/EdgePurger.o" - CXX code/EdgePurger/EdgePurger.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o -echo " CXX code/EdgePurger/EdgePurgerWorker.o" - CXX code/EdgePurger/EdgePurgerWorker.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurgerWorker.cpp -o code/EdgePurger/EdgePurgerWorker.o -echo " CXX code/Example/Example.o" - CXX code/Example/Example.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o -echo " CXX code/FusionData/FusionData.o" - CXX code/FusionData/FusionData.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o echo " CXX code/FusionTaskCreator/FusionWorker.o" CXX code/FusionTaskCreator/FusionWorker.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionWorker.cpp -o code/FusionTaskCreator/FusionWorker.o @@ -503,6 +539,20 @@ echo " CXX code/JoinerTaskCreator/JoinerWorker.o" CXX code/JoinerTaskCreator/JoinerWorker.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerWorker.cpp -o code/JoinerTaskCreator/JoinerWorker.o +echo " CXX code/JoinerTaskCreator/JoinerTaskCreator.o" + CXX code/JoinerTaskCreator/JoinerTaskCreator.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerTaskCreator.cpp -o code/JoinerTaskCreator/JoinerTaskCreator.o +echo " CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o" + CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/KmerAcademyBuilder.cpp -o code/KmerAcademyBuilder/KmerAcademyBuilder.o +In file included from /usr/include/c++/14/map:62, + from ./code/Mock/Parameters.h:29, + from code/GenomeNeighbourhood/GenomeNeighbourhood.h:32, + from code/GenomeNeighbourhood/GenomeNeighbourhood.cpp:28: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/set:62, from ./code/Searcher/VirtualKmerColor.h:30, from ./code/Searcher/ColorSet.h:25, @@ -515,16 +565,6 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 -In file included from /usr/include/c++/14/map:62, - from ./code/Mock/Parameters.h:29, - from code/GenomeNeighbourhood/GenomeNeighbourhood.h:32, - from code/GenomeNeighbourhood/GenomeNeighbourhood.cpp:28: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void GenomeNeighbourhood::processFinalList()' at code/GenomeNeighbourhood/GenomeNeighbourhood.cpp:602:42: @@ -544,6 +584,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX code/KmerAcademyBuilder/BloomFilter.o" + CXX code/KmerAcademyBuilder/BloomFilter.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/BloomFilter.cpp -o code/KmerAcademyBuilder/BloomFilter.o +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void GenomeNeighbourhood::selectHits()' at code/GenomeNeighbourhood/GenomeNeighbourhood.cpp:681:72: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -652,17 +697,15 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/map:63, - from ./code/Searcher/ColorSet.h:29: -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void GeneOntology::countOntologyTermsInGraph()' at code/GeneOntology/GeneOntology.cpp:1346:44: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 514 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 515 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ +echo " CXX code/KmerAcademyBuilder/Kmer.o" + CXX code/KmerAcademyBuilder/Kmer.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/Kmer.cpp -o code/KmerAcademyBuilder/Kmer.o +echo " CXX code/Library/LibraryPeakFinder.o" + CXX code/Library/LibraryPeakFinder.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryPeakFinder.cpp -o code/Library/LibraryPeakFinder.o +echo " CXX code/Library/LibraryWorker.o" + CXX code/Library/LibraryWorker.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryWorker.cpp -o code/Library/LibraryWorker.o In file included from /usr/include/c++/14/map:62, from ./code/Mock/Parameters.h:29, from code/JoinerTaskCreator/JoinerWorker.h:27, @@ -671,11 +714,10 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -echo " CXX code/JoinerTaskCreator/JoinerTaskCreator.o" - CXX code/JoinerTaskCreator/JoinerTaskCreator.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerTaskCreator.cpp -o code/JoinerTaskCreator/JoinerTaskCreator.o +In file included from /usr/include/c++/14/map:63, + from ./code/Searcher/ColorSet.h:29: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void GeneOntology::loadAnnotations()' at code/GeneOntology/GeneOntology.cpp:295:27: + inlined from 'void GeneOntology::countOntologyTermsInGraph()' at code/GeneOntology/GeneOntology.cpp:1346:44: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -683,6 +725,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX code/Library/Library.o" + CXX code/Library/Library.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/Library.cpp -o code/Library/Library.o In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', inlined from 'virtual void JoinerWorker::work()' at code/JoinerTaskCreator/JoinerWorker.cpp:174:41: @@ -765,9 +810,27 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o" - CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/KmerAcademyBuilder.cpp -o code/KmerAcademyBuilder/KmerAcademyBuilder.o +echo " CXX code/MachineHelper/MachineHelper.o" + CXX code/MachineHelper/MachineHelper.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MachineHelper/MachineHelper.cpp -o code/MachineHelper/MachineHelper.o +echo " CXX code/MessageProcessor/MessageProcessor.o" + CXX code/MessageProcessor/MessageProcessor.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MessageProcessor/MessageProcessor.cpp -o code/MessageProcessor/MessageProcessor.o +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', + inlined from 'void GeneOntology::loadAnnotations()' at code/GeneOntology/GeneOntology.cpp:295:27: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 514 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 515 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +echo " CXX code/Mock/Parameters.o" + CXX code/Mock/Parameters.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Parameters.cpp -o code/Mock/Parameters.o +echo " CXX code/Mock/common_functions.o" + CXX code/Mock/common_functions.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/common_functions.cpp -o code/Mock/common_functions.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void GeneOntology::writeOntologyFiles()' at code/GeneOntology/GeneOntology.cpp:740:23: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -804,27 +867,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/KmerAcademyBuilder/BloomFilter.o" - CXX code/KmerAcademyBuilder/BloomFilter.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/BloomFilter.cpp -o code/KmerAcademyBuilder/BloomFilter.o -echo " CXX code/KmerAcademyBuilder/Kmer.o" - CXX code/KmerAcademyBuilder/Kmer.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/Kmer.cpp -o code/KmerAcademyBuilder/Kmer.o -echo " CXX code/Library/LibraryPeakFinder.o" - CXX code/Library/LibraryPeakFinder.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryPeakFinder.cpp -o code/Library/LibraryPeakFinder.o -echo " CXX code/Library/LibraryWorker.o" - CXX code/Library/LibraryWorker.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryWorker.cpp -o code/Library/LibraryWorker.o -echo " CXX code/Library/Library.o" - CXX code/Library/Library.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/Library.cpp -o code/Library/Library.o -echo " CXX code/MachineHelper/MachineHelper.o" - CXX code/MachineHelper/MachineHelper.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MachineHelper/MachineHelper.cpp -o code/MachineHelper/MachineHelper.o -echo " CXX code/MessageProcessor/MessageProcessor.o" - CXX code/MessageProcessor/MessageProcessor.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MessageProcessor/MessageProcessor.cpp -o code/MessageProcessor/MessageProcessor.o +echo " CXX code/Mock/Mock.o" + CXX code/Mock/Mock.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Mock.cpp -o code/Mock/Mock.o In file included from /usr/include/c++/14/map:62, from ./code/Mock/Parameters.h:29, from code/MachineHelper/MachineHelper.h:25, @@ -833,9 +878,9 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -echo " CXX code/Mock/Parameters.o" - CXX code/Mock/Parameters.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Parameters.cpp -o code/Mock/Parameters.o +echo " CXX code/NetworkTest/NetworkTest.o" + CXX code/NetworkTest/NetworkTest.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/NetworkTest/NetworkTest.cpp -o code/NetworkTest/NetworkTest.o In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void MachineHelper::call_RAY_SLAVE_MODE_WRITE_KMERS()' at code/MachineHelper/MachineHelper.cpp:563:33: @@ -855,24 +900,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void MachineHelper::call_RAY_MASTER_MODE_WRITE_KMERS()' at code/MachineHelper/MachineHelper.cpp:484:28: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 514 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 515 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void MachineHelper::call_RAY_MASTER_MODE_WRITE_KMERS()' at code/MachineHelper/MachineHelper.cpp:514:49: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 514 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 515 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:62, from code/Mock/Parameters.h:29, from code/Mock/Parameters.cpp:26: @@ -880,6 +907,9 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/Partitioner/Partitioner.o" + CXX code/Partitioner/Partitioner.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Partitioner/Partitioner.cpp -o code/Partitioner/Partitioner.o In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void Parameters::setNumberOfSequences(int, LargeCount)' at code/Mock/Parameters.cpp:1400:33: @@ -899,20 +929,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/Mock/common_functions.o" - CXX code/Mock/common_functions.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/common_functions.cpp -o code/Mock/common_functions.o -echo " CXX code/Mock/Mock.o" - CXX code/Mock/Mock.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Mock.cpp -o code/Mock/Mock.o -echo " CXX code/NetworkTest/NetworkTest.o" - CXX code/NetworkTest/NetworkTest.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/NetworkTest/NetworkTest.cpp -o code/NetworkTest/NetworkTest.o -echo " CXX code/Partitioner/Partitioner.o" - CXX code/Partitioner/Partitioner.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Partitioner/Partitioner.cpp -o code/Partitioner/Partitioner.o +echo " CXX code/PathEvaluator/PathEvaluator.o" + CXX code/PathEvaluator/PathEvaluator.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/PathEvaluator/PathEvaluator.cpp -o code/PathEvaluator/PathEvaluator.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void Parameters::computeAverageDistances()' at code/Mock/Parameters.cpp:1360:66: + inlined from 'void MachineHelper::call_RAY_MASTER_MODE_WRITE_KMERS()' at code/MachineHelper/MachineHelper.cpp:484:28: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -921,7 +942,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void Parameters::computeAverageDistances()' at code/Mock/Parameters.cpp:1363:67: + inlined from 'void MachineHelper::call_RAY_MASTER_MODE_WRITE_KMERS()' at code/MachineHelper/MachineHelper.cpp:514:49: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -937,6 +958,9 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/Scaffolder/Scaffolder.o" + CXX code/Scaffolder/Scaffolder.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/Scaffolder.cpp -o code/Scaffolder/Scaffolder.o In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void Partitioner::call_RAY_SLAVE_MODE_COUNT_FILE_ENTRIES()' at code/Partitioner/Partitioner.cpp:263:23: @@ -1001,12 +1025,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/PathEvaluator/PathEvaluator.o" - CXX code/PathEvaluator/PathEvaluator.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/PathEvaluator/PathEvaluator.cpp -o code/PathEvaluator/PathEvaluator.o -echo " CXX code/Scaffolder/Scaffolder.o" - CXX code/Scaffolder/Scaffolder.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/Scaffolder.cpp -o code/Scaffolder/Scaffolder.o echo " CXX code/Scaffolder/ScaffoldingLink.o" CXX code/Scaffolder/ScaffoldingLink.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingLink.cpp -o code/Scaffolder/ScaffoldingLink.o @@ -1025,12 +1043,49 @@ echo " CXX code/Searcher/Searcher.o" CXX code/Searcher/Searcher.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/Searcher.cpp -o code/Searcher/Searcher.o +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void Parameters::computeAverageDistances()' at code/Mock/Parameters.cpp:1360:66: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 514 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 515 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void Parameters::computeAverageDistances()' at code/Mock/Parameters.cpp:1363:67: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 514 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 515 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +echo " CXX code/Searcher/SearchDirectory.o" + CXX code/Searcher/SearchDirectory.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/SearchDirectory.cpp -o code/Searcher/SearchDirectory.o +echo " CXX code/Searcher/ContigSearchEntry.o" + CXX code/Searcher/ContigSearchEntry.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigSearchEntry.cpp -o code/Searcher/ContigSearchEntry.o +code/Searcher/SearchDirectory.cpp: In member function 'void SearchDirectory::readLineFromFile(char*, int)': +code/Searcher/SearchDirectory.cpp:320:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 320 | fgets(line,length,m_currentFileStream); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/queue:64, from code/Scaffolder/ScaffoldingAlgorithm.cpp:23: /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ScaffoldingEdge; _Compare = __gnu_cxx::__ops::_Iter_comp_val >]': /usr/include/c++/14/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ +echo " CXX code/Searcher/ContigHit.o" + CXX code/Searcher/ContigHit.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigHit.cpp -o code/Searcher/ContigHit.o +echo " CXX code/Searcher/ColorSet.o" + CXX code/Searcher/ColorSet.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o +echo " CXX code/Searcher/VirtualKmerColor.o" + CXX code/Searcher/VirtualKmerColor.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/VirtualKmerColor.cpp -o code/Searcher/VirtualKmerColor.o In file included from /usr/include/c++/14/set:62, from code/Scaffolder/ScaffoldingAlgorithm.h:30, from code/Scaffolder/ScaffoldingAlgorithm.cpp:21: @@ -1084,15 +1139,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/map:62, - from ./code/Mock/Parameters.h:29, - from ./code/SeedExtender/ReadFetcher.h:26, - from code/Scaffolder/Scaffolder.h:28, - from code/Scaffolder/Scaffolder.cpp:22: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair > > > >; _KeyOfValue = std::_Select1st > > > > >; _Compare = std::less; _Alloc = std::allocator > > > > >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree > > > >, std::_Select1st > > > > >, std::less, std::allocator > > > > > >::const_iterator' changed in GCC 7.1 - 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void ScaffoldingAlgorithm::extractScaffolds(char, std::map*, PathHandle, std::map > > >*, std::map > > >*, std::set*, std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:416:35: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -1192,10 +1238,22 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/map:62, + from ./code/Mock/Parameters.h:29, + from ./code/SeedExtender/ReadFetcher.h:26, + from code/Scaffolder/Scaffolder.h:28, + from code/Scaffolder/Scaffolder.cpp:22: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair > > > >; _KeyOfValue = std::_Select1st > > > > >; _Compare = std::less; _Alloc = std::allocator > > > > >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree > > > >, std::_Select1st > > > > >, std::less, std::allocator > > > > > >::const_iterator' changed in GCC 7.1 + 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +echo " CXX code/Searcher/QualityCaller.o" + CXX code/Searcher/QualityCaller.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/QualityCaller.cpp -o code/Searcher/QualityCaller.o In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void Scaffolder::getContigSequenceFromPackedObjects(PathHandle)' at code/Scaffolder/Scaffolder.cpp:1469:69: @@ -1268,108 +1326,150 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > > >; _Compare = std::less; _Alloc = std::allocator > > > > >]', - inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:89:18: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > > >, std::_Select1st > > > > >, std::less, std::allocator > > > > > >::const_iterator' changed in GCC 7.1 +In file included from /usr/include/c++/14/set:62, + from code/Searcher/VirtualKmerColor.h:30, + from code/Searcher/ColorSet.h:25, + from code/Searcher/ColorSet.cpp:25: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/set:62, + from ./code/Searcher/VirtualKmerColor.h:30, + from ./code/Searcher/ColorSet.h:25, + from ./code/VerticesExtractor/Vertex.h:29, + from ./code/VerticesExtractor/GridTable.h:25, + from code/Searcher/Searcher.h:24, + from code/Searcher/Searcher.cpp:31: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/Searcher/DistributionWriter.o" + CXX code/Searcher/DistributionWriter.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/DistributionWriter.cpp -o code/Searcher/DistributionWriter.o +In file included from /usr/include/c++/14/map:63, + from code/Searcher/ColorSet.h:29: +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void ColorSet::printSummary(std::ostream*, bool)' at code/Searcher/ColorSet.cpp:240:34: +/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 533 | std::forward_as_tuple(std::move(__k)), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 534 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void ColorSet::printSummary(std::ostream*, bool)' at code/Searcher/ColorSet.cpp:244:34: +/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 533 | std::forward_as_tuple(std::move(__k)), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 534 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map; _Compare = std::less; _Alloc = std::allocator > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:141:26: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map >; _Compare = std::less; _Alloc = std::allocator > > >]', - inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:89:43: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:141:39: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > > >; _Compare = std::less; _Alloc = std::allocator > > > > >]', - inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:90:18: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > > >, std::_Select1st > > > > >, std::less, std::allocator > > > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map; _Compare = std::less; _Alloc = std::allocator > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:142:27: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map >; _Compare = std::less; _Alloc = std::allocator > > >]', - inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:90:43: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:142:39: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > > >; _Compare = std::less; _Alloc = std::allocator > > > > >]', - inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:91:18: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > > >, std::_Select1st > > > > >, std::less, std::allocator > > > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:168:22: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map >; _Compare = std::less; _Alloc = std::allocator > > >]', - inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:91:43: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:169:22: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:231:37: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:178:23: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:257:44: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:179:21: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:141:26: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:187:12: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:141:39: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:196:47: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:142:27: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:197:21: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:142:39: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map; _Compare = std::less; _Alloc = std::allocator > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:201:24: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), @@ -1377,7 +1477,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:168:22: + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:216:47: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1386,7 +1486,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:169:22: + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:217:21: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1394,81 +1494,81 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:178:23: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map; _Compare = std::less; _Alloc = std::allocator > >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:221:25: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:179:21: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:269:55: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:187:12: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > > >; _Compare = std::less; _Alloc = std::allocator > > > > >]', + inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:89:18: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > > >, std::_Select1st > > > > >, std::less, std::allocator > > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:196:47: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map >; _Compare = std::less; _Alloc = std::allocator > > >]', + inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:89:43: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:197:21: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > > >; _Compare = std::less; _Alloc = std::allocator > > > > >]', + inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:90:18: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > > >, std::_Select1st > > > > >, std::less, std::allocator > > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:201:24: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map >; _Compare = std::less; _Alloc = std::allocator > > >]', + inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:90:43: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:216:47: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > > >; _Compare = std::less; _Alloc = std::allocator > > > > >]', + inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:91:18: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > > >, std::_Select1st > > > > >, std::less, std::allocator > > > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map > >; _Compare = std::less; _Alloc = std::allocator > > > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:217:21: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > > >, std::_Select1st > > > >, std::less, std::allocator > > > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map >; _Compare = std::less; _Alloc = std::allocator > > >]', + inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:91:43: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::map; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:221:25: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:231:37: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), @@ -1476,7 +1576,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void ScaffoldingAlgorithm::solve(std::vector >*, std::vector >*, std::vector >*)' at code/Scaffolder/ScaffoldingAlgorithm.cpp:269:55: + inlined from 'void Scaffolder::solve()' at code/Scaffolder/Scaffolder.cpp:257:44: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1484,20 +1584,24 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/set:62, - from ./code/Searcher/VirtualKmerColor.h:30, - from ./code/Searcher/ColorSet.h:25, - from ./code/VerticesExtractor/Vertex.h:29, - from ./code/VerticesExtractor/GridTable.h:25, - from code/Searcher/Searcher.h:24, - from code/Searcher/Searcher.cpp:31: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -echo " CXX code/Searcher/SearchDirectory.o" - CXX code/Searcher/SearchDirectory.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/SearchDirectory.cpp -o code/Searcher/SearchDirectory.o +echo " CXX code/Searcher/ColoredPeakFinder.o" + CXX code/Searcher/ColoredPeakFinder.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColoredPeakFinder.cpp -o code/Searcher/ColoredPeakFinder.o +echo " CXX code/SeedExtender/SeedExtender.o" + CXX code/SeedExtender/SeedExtender.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/SeedExtender.cpp -o code/SeedExtender/SeedExtender.o +echo " CXX code/SeedExtender/Direction.o" + CXX code/SeedExtender/Direction.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Direction.cpp -o code/SeedExtender/Direction.o +echo " CXX code/SeedExtender/VertexMessenger.o" + CXX code/SeedExtender/VertexMessenger.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/VertexMessenger.cpp -o code/SeedExtender/VertexMessenger.o +echo " CXX code/SeedExtender/ReadFetcher.o" + CXX code/SeedExtender/ReadFetcher.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ReadFetcher.cpp -o code/SeedExtender/ReadFetcher.o +echo " CXX code/SeedExtender/BubbleTool.o" + CXX code/SeedExtender/BubbleTool.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/BubbleTool.cpp -o code/SeedExtender/BubbleTool.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void Scaffolder::getContigSequenceFromKmers(PathHandle)' at code/Scaffolder/Scaffolder.cpp:1552:33: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -1525,16 +1629,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -code/Searcher/SearchDirectory.cpp: In member function 'void SearchDirectory::readLineFromFile(char*, int)': -code/Searcher/SearchDirectory.cpp:320:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 320 | fgets(line,length,m_currentFileStream); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -echo " CXX code/Searcher/ContigSearchEntry.o" - CXX code/Searcher/ContigSearchEntry.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigSearchEntry.cpp -o code/Searcher/ContigSearchEntry.o -echo " CXX code/Searcher/ContigHit.o" - CXX code/Searcher/ContigHit.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigHit.cpp -o code/Searcher/ContigHit.o In file included from /usr/include/c++/14/map:63, from ./code/Searcher/ColorSet.h:29: /usr/include/c++/14/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]': @@ -1545,12 +1639,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/Searcher/ColorSet.o" - CXX code/Searcher/ColorSet.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o -echo " CXX code/Searcher/VirtualKmerColor.o" - CXX code/Searcher/VirtualKmerColor.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/VirtualKmerColor.cpp -o code/Searcher/VirtualKmerColor.o +echo " CXX code/SeedExtender/Chooser.o" + CXX code/SeedExtender/Chooser.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Chooser.cpp -o code/SeedExtender/Chooser.o +echo " CXX code/SeedExtender/OpenAssemblerChooser.o" + CXX code/SeedExtender/OpenAssemblerChooser.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/OpenAssemblerChooser.cpp -o code/SeedExtender/OpenAssemblerChooser.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void Searcher::call_RAY_SLAVE_MODE_CONTIG_BIOLOGICAL_ABUNDANCES()' at code/Searcher/Searcher.cpp:1149:35: /usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -1560,65 +1654,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/Searcher/QualityCaller.o" - CXX code/Searcher/QualityCaller.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/QualityCaller.cpp -o code/Searcher/QualityCaller.o -/usr/include/c++/14/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = PathHandle; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': -/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/set:62, - from code/Searcher/VirtualKmerColor.h:30, - from code/Searcher/ColorSet.h:25, - from code/Searcher/ColorSet.cpp:25: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/map:63, - from code/Searcher/ColorSet.h:29: -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void ColorSet::printSummary(std::ostream*, bool)' at code/Searcher/ColorSet.cpp:240:34: -/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 533 | std::forward_as_tuple(std::move(__k)), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 534 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'void ColorSet::printSummary(std::ostream*, bool)' at code/Searcher/ColorSet.cpp:244:34: -/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 - 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 533 | std::forward_as_tuple(std::move(__k)), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 534 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -echo " CXX code/Searcher/DistributionWriter.o" - CXX code/Searcher/DistributionWriter.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/DistributionWriter.cpp -o code/Searcher/DistributionWriter.o -echo " CXX code/Searcher/ColoredPeakFinder.o" - CXX code/Searcher/ColoredPeakFinder.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColoredPeakFinder.cpp -o code/Searcher/ColoredPeakFinder.o -echo " CXX code/SeedExtender/SeedExtender.o" - CXX code/SeedExtender/SeedExtender.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/SeedExtender.cpp -o code/SeedExtender/SeedExtender.o -echo " CXX code/SeedExtender/Direction.o" - CXX code/SeedExtender/Direction.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Direction.cpp -o code/SeedExtender/Direction.o -echo " CXX code/SeedExtender/VertexMessenger.o" - CXX code/SeedExtender/VertexMessenger.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/VertexMessenger.cpp -o code/SeedExtender/VertexMessenger.o -echo " CXX code/SeedExtender/ReadFetcher.o" - CXX code/SeedExtender/ReadFetcher.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ReadFetcher.cpp -o code/SeedExtender/ReadFetcher.o -echo " CXX code/SeedExtender/BubbleTool.o" - CXX code/SeedExtender/BubbleTool.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/BubbleTool.cpp -o code/SeedExtender/BubbleTool.o -echo " CXX code/SeedExtender/Chooser.o" - CXX code/SeedExtender/Chooser.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Chooser.cpp -o code/SeedExtender/Chooser.o In file included from /usr/include/c++/14/map:62, from RayPlatform/RayPlatform/memory/ReusableMemoryStore.h:26, from RayPlatform/RayPlatform/memory/MyAllocator.h:25, @@ -1668,9 +1703,16 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/SeedExtender/OpenAssemblerChooser.o" - CXX code/SeedExtender/OpenAssemblerChooser.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/OpenAssemblerChooser.cpp -o code/SeedExtender/OpenAssemblerChooser.o +/usr/include/c++/14/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = PathHandle; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': +/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 + 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/SeedExtender/TipWatchdog.o" + CXX code/SeedExtender/TipWatchdog.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/TipWatchdog.cpp -o code/SeedExtender/TipWatchdog.o +echo " CXX code/SeedExtender/NovaEngine.o" + CXX code/SeedExtender/NovaEngine.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/NovaEngine.cpp -o code/SeedExtender/NovaEngine.o In file included from /usr/include/c++/14/map:62, from ./code/Mock/Parameters.h:29, from code/SeedExtender/BubbleTool.h:26, @@ -1745,17 +1787,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/SeedExtender/TipWatchdog.o" - CXX code/SeedExtender/TipWatchdog.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/TipWatchdog.cpp -o code/SeedExtender/TipWatchdog.o -In file included from /usr/include/c++/14/map:62, - from ./code/Mock/Parameters.h:29, - from code/SeedExtender/BubbleTool.h:26, - from code/SeedExtender/SeedExtender.cpp:22: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Kmer; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/SeedExtender/ExtensionElement.o" + CXX code/SeedExtender/ExtensionElement.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionElement.cpp -o code/SeedExtender/ExtensionElement.o In file included from /usr/include/c++/14/map:62, from RayPlatform/RayPlatform/memory/ReusableMemoryStore.h:26, from RayPlatform/RayPlatform/memory/MyAllocator.h:25, @@ -1769,9 +1803,12 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/SeedExtender/DepthFirstSearchData.o" + CXX code/SeedExtender/DepthFirstSearchData.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/DepthFirstSearchData.cpp -o code/SeedExtender/DepthFirstSearchData.o In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1906:76: + inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:45:56: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1780,7 +1817,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1911:54: + inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:45:115: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1789,7 +1826,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1907:66: + inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:147:65: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1798,7 +1835,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1914:82: + inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:144:73: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1807,7 +1844,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1918:60: + inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:193:57: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1816,7 +1853,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1915:72: + inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:212:76: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1824,9 +1861,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:45:56: + inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:213:52: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1834,8 +1870,32 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX code/SeedExtender/ExtensionData.o" + CXX code/SeedExtender/ExtensionData.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionData.cpp -o code/SeedExtender/ExtensionData.o +echo " CXX code/SeedingData/GraphPath.o" + CXX code/SeedingData/GraphPath.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/GraphPath.cpp -o code/SeedingData/GraphPath.o +echo " CXX code/SeedingData/SeedWorker.o" + CXX code/SeedingData/SeedWorker.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedWorker.cpp -o code/SeedingData/SeedWorker.o +echo " CXX code/SeedingData/SeedingData.o" + CXX code/SeedingData/SeedingData.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedingData.cpp -o code/SeedingData/SeedingData.o +echo " CXX code/SeedingData/PathHandle.o" + CXX code/SeedingData/PathHandle.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/PathHandle.cpp -o code/SeedingData/PathHandle.o +In file included from /usr/include/c++/14/map:62, + from ./code/Mock/Parameters.h:29, + from code/SeedExtender/BubbleTool.h:26, + from code/SeedExtender/SeedExtender.cpp:22: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Kmer; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:45:115: + inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1906:76: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1844,7 +1904,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:147:65: + inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1911:54: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1853,7 +1913,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:144:73: + inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1907:66: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1862,7 +1922,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:193:57: + inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1914:82: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1871,7 +1931,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:212:76: + inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1918:60: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1880,7 +1940,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'int OpenAssemblerChooser::choose(ExtensionData*, Chooser*, int, Parameters*)' at code/SeedExtender/OpenAssemblerChooser.cpp:213:52: + inlined from 'void SeedExtender::inspect(ExtensionData*, Kmer*)' at code/SeedExtender/SeedExtender.cpp:1915:72: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1888,10 +1948,43 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX code/SequencesIndexer/SequencesIndexer.o" + CXX code/SequencesIndexer/SequencesIndexer.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/SequencesIndexer.cpp -o code/SequencesIndexer/SequencesIndexer.o +In file included from /usr/include/c++/14/map:62, + from ./code/Mock/Parameters.h:29, + from code/SeedExtender/DepthFirstSearchData.h:25, + from code/SeedExtender/DepthFirstSearchData.cpp:22: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Kmer; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/map:63: +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', + inlined from 'void DepthFirstSearchData::depthFirstSearchBidirectional(Kmer, int, bool*, bool*, bool*, RingAllocator*, int, int, StaticVector*, int*, SeedingData*, int, bool*, Parameters*)' at code/SeedExtender/DepthFirstSearchData.cpp:294:34: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 514 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 515 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', + inlined from 'void DepthFirstSearchData::depthFirstSearchBidirectional(Kmer, int, bool*, bool*, bool*, RingAllocator*, int, int, StaticVector*, int*, SeedingData*, int, bool*, Parameters*)' at code/SeedExtender/DepthFirstSearchData.cpp:328:33: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 514 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 515 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Kmer; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/SequencesIndexer/IndexerWorker.o" + CXX code/SequencesIndexer/IndexerWorker.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/IndexerWorker.cpp -o code/SequencesIndexer/IndexerWorker.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', inlined from 'void SeedExtender::removeUnfitLibraries()' at code/SeedExtender/SeedExtender.cpp:1933:69: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 @@ -1937,12 +2030,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/SeedExtender/NovaEngine.o" - CXX code/SeedExtender/NovaEngine.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/NovaEngine.cpp -o code/SeedExtender/NovaEngine.o -echo " CXX code/SeedExtender/ExtensionElement.o" - CXX code/SeedExtender/ExtensionElement.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionElement.cpp -o code/SeedExtender/ExtensionElement.o +echo " CXX code/SequencesIndexer/PairedRead.o" + CXX code/SequencesIndexer/PairedRead.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/PairedRead.cpp -o code/SequencesIndexer/PairedRead.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', inlined from 'void SeedExtender::doChoice(RingAllocator*, int*, StaticVector*, Kmer*, BubbleData*, int, int, ExtensionData*, int, OpenAssemblerChooser*, Chooser*, std::vector*, bool*, bool*, bool*, int, int*, bool*, std::vector*)' at code/SeedExtender/SeedExtender.cpp:468:82: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 @@ -1997,9 +2087,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/SeedExtender/DepthFirstSearchData.o" - CXX code/SeedExtender/DepthFirstSearchData.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/DepthFirstSearchData.cpp -o code/SeedExtender/DepthFirstSearchData.o +echo " CXX code/SequencesIndexer/ReadAnnotation.o" + CXX code/SequencesIndexer/ReadAnnotation.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/ReadAnnotation.cpp -o code/SequencesIndexer/ReadAnnotation.o +echo " CXX code/SequencesLoader/SequencesLoader.o" + CXX code/SequencesLoader/SequencesLoader.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequencesLoader.cpp -o code/SequencesLoader/SequencesLoader.o /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: @@ -2013,6 +2106,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX code/SequencesLoader/Read.o" + CXX code/SequencesLoader/Read.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Read.cpp -o code/SequencesLoader/Read.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void SeedExtender::finalizeExtensions(std::vector*, FusionData*)' at code/SeedExtender/SeedExtender.cpp:2467:41: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -2022,66 +2118,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/SeedExtender/ExtensionData.o" - CXX code/SeedExtender/ExtensionData.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionData.cpp -o code/SeedExtender/ExtensionData.o -echo " CXX code/SeedingData/GraphPath.o" - CXX code/SeedingData/GraphPath.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/GraphPath.cpp -o code/SeedingData/GraphPath.o -In file included from /usr/include/c++/14/map:62, - from ./code/Mock/Parameters.h:29, - from code/SeedExtender/DepthFirstSearchData.h:25, - from code/SeedExtender/DepthFirstSearchData.cpp:22: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Kmer; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/map:63: -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void DepthFirstSearchData::depthFirstSearchBidirectional(Kmer, int, bool*, bool*, bool*, RingAllocator*, int, int, StaticVector*, int*, SeedingData*, int, bool*, Parameters*)' at code/SeedExtender/DepthFirstSearchData.cpp:294:34: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 514 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 515 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'void DepthFirstSearchData::depthFirstSearchBidirectional(Kmer, int, bool*, bool*, bool*, RingAllocator*, int, int, StaticVector*, int*, SeedingData*, int, bool*, Parameters*)' at code/SeedExtender/DepthFirstSearchData.cpp:328:33: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 514 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 515 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -echo " CXX code/SeedingData/SeedWorker.o" - CXX code/SeedingData/SeedWorker.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedWorker.cpp -o code/SeedingData/SeedWorker.o -echo " CXX code/SeedingData/SeedingData.o" - CXX code/SeedingData/SeedingData.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedingData.cpp -o code/SeedingData/SeedingData.o -echo " CXX code/SeedingData/PathHandle.o" - CXX code/SeedingData/PathHandle.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/PathHandle.cpp -o code/SeedingData/PathHandle.o -echo " CXX code/SequencesIndexer/SequencesIndexer.o" - CXX code/SequencesIndexer/SequencesIndexer.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/SequencesIndexer.cpp -o code/SequencesIndexer/SequencesIndexer.o -echo " CXX code/SequencesIndexer/IndexerWorker.o" - CXX code/SequencesIndexer/IndexerWorker.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/IndexerWorker.cpp -o code/SequencesIndexer/IndexerWorker.o -echo " CXX code/SequencesIndexer/PairedRead.o" - CXX code/SequencesIndexer/PairedRead.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/PairedRead.cpp -o code/SequencesIndexer/PairedRead.o -echo " CXX code/SequencesIndexer/ReadAnnotation.o" - CXX code/SequencesIndexer/ReadAnnotation.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/ReadAnnotation.cpp -o code/SequencesIndexer/ReadAnnotation.o -echo " CXX code/SequencesLoader/SequencesLoader.o" - CXX code/SequencesLoader/SequencesLoader.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequencesLoader.cpp -o code/SequencesLoader/SequencesLoader.o -echo " CXX code/SequencesLoader/Read.o" - CXX code/SequencesLoader/Read.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Read.cpp -o code/SequencesLoader/Read.o echo " CXX code/SequencesLoader/ArrayOfReads.o" CXX code/SequencesLoader/ArrayOfReads.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ArrayOfReads.cpp -o code/SequencesLoader/ArrayOfReads.o @@ -2108,8 +2144,8 @@ arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderInterface.cpp -o code/SequencesLoader/LoaderInterface.o echo " CXX code/SequencesLoader/LoaderFactory.o" CXX code/SequencesLoader/LoaderFactory.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderFactory.cpp -o code/SequencesLoader/LoaderFactory.o echo " CXX code/SequencesLoader/SffLoader.o" +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderFactory.cpp -o code/SequencesLoader/LoaderFactory.o CXX code/SequencesLoader/SffLoader.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SffLoader.cpp -o code/SequencesLoader/SffLoader.o echo " CXX code/SequencesLoader/Loader.o" @@ -2169,6 +2205,9 @@ echo " CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o" CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp -o code/SpuriousSeedAnnihilator/SeedGossipSolver.o +echo " CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o" + CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GossipAssetManager.cpp -o code/SpuriousSeedAnnihilator/GossipAssetManager.o In file included from /usr/include/c++/14/vector:72, from ./code/KmerAcademyBuilder/Kmer.h:35, from ./code/SeedingData/GraphPath.h:25, @@ -2185,6 +2224,13 @@ /usr/include/c++/14/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/Surveyor/Mother.o" + CXX code/Surveyor/Mother.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/Mother.cpp -o code/Surveyor/Mother.o +code/SpuriousSeedAnnihilator/GraphSearchResult.cpp: In member function 'bool GraphSearchResult::addPathOnLeftSide(PathHandle&, bool, GraphPath&)': +code/SpuriousSeedAnnihilator/GraphSearchResult.cpp:195:29: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 + 195 | m_pathHandles.insert(m_pathHandles.begin(), handle); + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:62, from ./code/Mock/Parameters.h:29, from code/SpuriousSeedAnnihilator/AttributeFetcher.h:25, @@ -2194,13 +2240,6 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/map:62, - from code/SpuriousSeedAnnihilator/SeedGossipSolver.h:28, - from code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp:21: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 - 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'bool GraphExplorer::getBestParent(Kmer*, Kmer)' at code/SpuriousSeedAnnihilator/GraphExplorer.cpp:138:45: @@ -2211,10 +2250,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -code/SpuriousSeedAnnihilator/GraphSearchResult.cpp: In member function 'bool GraphSearchResult::addPathOnLeftSide(PathHandle&, bool, GraphPath&)': -code/SpuriousSeedAnnihilator/GraphSearchResult.cpp:195:29: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 - 195 | m_pathHandles.insert(m_pathHandles.begin(), handle); - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/map:62, + from code/SpuriousSeedAnnihilator/SeedGossipSolver.h:28, + from code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp:21: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = PathHandle; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 + 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', inlined from 'void SeedGossipSolver::printSolution()' at code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp:126:18: @@ -2243,9 +2285,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'bool SeedGossipSolver::expand(GraphSearchResult&)' at code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp:185:45: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 +echo " CXX code/Surveyor/StoreKeeper.o" + CXX code/Surveyor/StoreKeeper.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/StoreKeeper.cpp -o code/Surveyor/StoreKeeper.o +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', + inlined from 'bool GraphExplorer::work()' at code/SpuriousSeedAnnihilator/GraphExplorer.cpp:404:24: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), @@ -2253,7 +2298,7 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', - inlined from 'bool SeedGossipSolver::expand(GraphSearchResult&)' at code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp:263:46: + inlined from 'bool SeedGossipSolver::expand(GraphSearchResult&)' at code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp:185:45: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2261,24 +2306,15 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o" - CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GossipAssetManager.cpp -o code/SpuriousSeedAnnihilator/GossipAssetManager.o -In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less; _Alloc = std::allocator >]', - inlined from 'bool GraphExplorer::work()' at code/SpuriousSeedAnnihilator/GraphExplorer.cpp:404:24: -/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 +In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = PathHandle; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]', + inlined from 'bool SeedGossipSolver::expand(GraphSearchResult&)' at code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp:263:46: +/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/Surveyor/Mother.o" - CXX code/Surveyor/Mother.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/Mother.cpp -o code/Surveyor/Mother.o -echo " CXX code/Surveyor/StoreKeeper.o" - CXX code/Surveyor/StoreKeeper.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/StoreKeeper.cpp -o code/Surveyor/StoreKeeper.o echo " CXX code/Surveyor/GenomeGraphReader.o" CXX code/Surveyor/GenomeGraphReader.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/GenomeGraphReader.cpp -o code/Surveyor/GenomeGraphReader.o @@ -2300,6 +2336,18 @@ echo " CXX code/TaxonomyViewer/TaxonomicTreeLoader.o" CXX code/TaxonomyViewer/TaxonomicTreeLoader.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomicTreeLoader.cpp -o code/TaxonomyViewer/TaxonomicTreeLoader.o +echo " CXX code/TaxonomyViewer/TaxonNameLoader.o" + CXX code/TaxonomyViewer/TaxonNameLoader.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonNameLoader.cpp -o code/TaxonomyViewer/TaxonNameLoader.o +echo " CXX code/VerticesExtractor/VerticesExtractor.o" + CXX code/VerticesExtractor/VerticesExtractor.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/VerticesExtractor.cpp -o code/VerticesExtractor/VerticesExtractor.o +echo " CXX code/VerticesExtractor/GridTable.o" + CXX code/VerticesExtractor/GridTable.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTable.cpp -o code/VerticesExtractor/GridTable.o +echo " CXX code/VerticesExtractor/GridTableIterator.o" + CXX code/VerticesExtractor/GridTableIterator.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTableIterator.cpp -o code/VerticesExtractor/GridTableIterator.o In file included from /usr/include/c++/14/map:62, from ./code/Mock/Parameters.h:29, from code/Surveyor/MatrixOwner.h:25, @@ -2308,6 +2356,9 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX code/VerticesExtractor/Vertex.o" + CXX code/VerticesExtractor/Vertex.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/Vertex.cpp -o code/VerticesExtractor/Vertex.o In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void MatrixOwner::computeDistanceMatrix()' at code/Surveyor/MatrixOwner.cpp:184:50: @@ -2372,12 +2423,33 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/TaxonomyViewer/TaxonNameLoader.o" - CXX code/TaxonomyViewer/TaxonNameLoader.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonNameLoader.cpp -o code/TaxonomyViewer/TaxonNameLoader.o -echo " CXX code/VerticesExtractor/VerticesExtractor.o" - CXX code/VerticesExtractor/VerticesExtractor.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/VerticesExtractor.cpp -o code/VerticesExtractor/VerticesExtractor.o +echo " CXX code/application_core/Machine.o" + CXX code/application_core/Machine.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/Machine.cpp -o code/application_core/Machine.o +make -w -j6 --jobserver-auth=3,4 -C RayPlatform +make[3]: Entering directory '/build/reproducible-path/ray-2.3.1' +make[3]: warning: -j6 forced in submake: resetting jobserver mode. +echo " CXX RayPlatform/memory/ReusableMemoryStore.o" +echo " CXX RayPlatform/memory/MyAllocator.o" + CXX RayPlatform/memory/ReusableMemoryStore.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/ReusableMemoryStore.cpp + CXX RayPlatform/memory/MyAllocator.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/MyAllocator.o RayPlatform/memory/MyAllocator.cpp +echo " CXX RayPlatform/memory/RingAllocator.o" +echo " CXX RayPlatform/memory/allocator.o" + CXX RayPlatform/memory/RingAllocator.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp + CXX RayPlatform/memory/allocator.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/allocator.o RayPlatform/memory/allocator.cpp +echo " CXX RayPlatform/memory/DefragmentationGroup.o" +echo " CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o" + CXX RayPlatform/memory/DefragmentationGroup.o + CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/DefragmentationGroup.cpp +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp +echo " CXX RayPlatform/memory/DefragmentationLane.o" + CXX RayPlatform/memory/DefragmentationLane.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DefragmentationLane.cpp In file included from /usr/include/c++/14/set:62, from ./code/Searcher/VirtualKmerColor.h:30, from ./code/Searcher/ColorSet.h:25, @@ -2387,13 +2459,31 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -echo " CXX code/VerticesExtractor/GridTable.o" - CXX code/VerticesExtractor/GridTable.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTable.cpp -o code/VerticesExtractor/GridTable.o +echo " CXX RayPlatform/memory/DirtyBuffer.o" + CXX RayPlatform/memory/DirtyBuffer.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp +echo " CXX RayPlatform/routing/ConnectionGraph.o" + CXX RayPlatform/routing/ConnectionGraph.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/ConnectionGraph.cpp +echo " CXX RayPlatform/routing/GraphImplementation.o" + CXX RayPlatform/routing/GraphImplementation.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 +echo " CXX RayPlatform/routing/GraphImplementationRandom.o" + CXX RayPlatform/routing/GraphImplementationRandom.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationRandom.cpp +echo " CXX RayPlatform/routing/GraphImplementationComplete.o" + CXX RayPlatform/routing/GraphImplementationComplete.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationComplete.cpp +echo " CXX RayPlatform/routing/GraphImplementationDeBruijn.o" + CXX RayPlatform/routing/GraphImplementationDeBruijn.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationDeBruijn.cpp +echo " CXX RayPlatform/routing/GraphImplementationKautz.o" + CXX RayPlatform/routing/GraphImplementationKautz.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationKautz.cpp /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator' changed in GCC 7.1 In file included from /usr/include/c++/14/map:63, @@ -2479,6 +2569,24 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +RayPlatform/routing/GraphImplementationRandom.cpp: In member function 'virtual void GraphImplementationRandom::makeConnections(int)': +RayPlatform/routing/GraphImplementationRandom.cpp:67:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 67 | std::random_shuffle(identifiers.begin(),identifiers.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/algorithm:61, + from RayPlatform/routing/GraphImplementationRandom.cpp:25: +/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here + 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +RayPlatform/routing/GraphImplementation.cpp: In member function 'void GraphImplementation::computeRoutes()': +RayPlatform/routing/GraphImplementation.cpp:252:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 252 | std::random_shuffle(pairs.begin(),pairs.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/algorithm:61, + from RayPlatform/routing/GraphImplementation.cpp:26: +/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here + 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void TaxonomyViewer::loadTaxons()' at code/TaxonomyViewer/TaxonomyViewer.cpp:1142:26: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -2488,9 +2596,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/VerticesExtractor/GridTableIterator.o" - CXX code/VerticesExtractor/GridTableIterator.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTableIterator.cpp -o code/VerticesExtractor/GridTableIterator.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::__cxx11::basic_string; _Compare = std::less; _Alloc = std::allocator > >]', inlined from 'void TaxonomyViewer::loadTaxonNames()' at code/TaxonomyViewer/TaxonomyViewer.cpp:988:22: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 @@ -2509,6 +2614,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX RayPlatform/routing/GraphImplementationExperimental.o" + CXX RayPlatform/routing/GraphImplementationExperimental.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = std::set; _Compare = std::less; _Alloc = std::allocator > >]', inlined from 'void TaxonomyViewer::loadTree()' at code/TaxonomyViewer/TaxonomyViewer.cpp:350:26: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator' changed in GCC 7.1 @@ -2536,9 +2644,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/VerticesExtractor/Vertex.o" - CXX code/VerticesExtractor/Vertex.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/Vertex.cpp -o code/VerticesExtractor/Vertex.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'LargeCount TaxonomyViewer::getSelfCount(TaxonIdentifier)' at code/TaxonomyViewer/TaxonomyViewer.cpp:530:34, inlined from 'void TaxonomyViewer::populateRanks(std::map, long long unsigned int>*, std::map, long long unsigned int>*)' at code/TaxonomyViewer/TaxonomyViewer.cpp:540:36: @@ -2585,9 +2690,15 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX code/application_core/Machine.o" - CXX code/application_core/Machine.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/Machine.cpp -o code/application_core/Machine.o +echo " CXX RayPlatform/routing/GraphImplementationGroup.o" + CXX RayPlatform/routing/GraphImplementationGroup.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp +echo " CXX RayPlatform/routing/Polytope.o" + CXX RayPlatform/routing/Polytope.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp +echo " CXX RayPlatform/routing/Torus.o" + CXX RayPlatform/routing/Torus.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Torus.o RayPlatform/routing/Torus.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long unsigned int; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]', inlined from 'void TaxonomyViewer::showObservations_XML(std::ostream*)' at code/TaxonomyViewer/TaxonomyViewer.cpp:594:45: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator' changed in GCC 7.1 @@ -2625,18 +2736,21 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -make -w -j3 --jobserver-auth=3,4 -C RayPlatform -make[3]: Entering directory '/build/reproducible-path/ray-2.3.1' -make[3]: warning: -j3 forced in submake: resetting jobserver mode. -echo " CXX RayPlatform/memory/ReusableMemoryStore.o" -echo " CXX RayPlatform/memory/MyAllocator.o" - CXX RayPlatform/memory/ReusableMemoryStore.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/ReusableMemoryStore.cpp - CXX RayPlatform/memory/MyAllocator.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/MyAllocator.o RayPlatform/memory/MyAllocator.cpp -echo " CXX RayPlatform/memory/RingAllocator.o" - CXX RayPlatform/memory/RingAllocator.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp +echo " CXX RayPlatform/communication/mpi_tags.o" + CXX RayPlatform/communication/mpi_tags.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/mpi_tags.o RayPlatform/communication/mpi_tags.cpp +echo " CXX RayPlatform/communication/VirtualCommunicator.o" + CXX RayPlatform/communication/VirtualCommunicator.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/VirtualCommunicator.cpp +echo " CXX RayPlatform/communication/BufferedData.o" + CXX RayPlatform/communication/BufferedData.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/BufferedData.o RayPlatform/communication/BufferedData.cpp +echo " CXX RayPlatform/communication/Message.o" + CXX RayPlatform/communication/Message.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/Message.o RayPlatform/communication/Message.cpp +echo " CXX RayPlatform/communication/MessagesHandler.o" + CXX RayPlatform/communication/MessagesHandler.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessagesHandler.cpp /usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: @@ -2714,6 +2828,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX RayPlatform/communication/MessageQueue.o" + CXX RayPlatform/communication/MessageQueue.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageQueue.cpp +echo " CXX RayPlatform/communication/MessageRouter.o" + CXX RayPlatform/communication/MessageRouter.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageRouter.o RayPlatform/communication/MessageRouter.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void TaxonomyViewer::gatherKmerObservations()' at code/TaxonomyViewer/TaxonomyViewer.cpp:486:60: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -2723,93 +2843,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX RayPlatform/memory/allocator.o" - CXX RayPlatform/memory/allocator.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/allocator.o RayPlatform/memory/allocator.cpp -echo " CXX RayPlatform/memory/DefragmentationGroup.o" - CXX RayPlatform/memory/DefragmentationGroup.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/DefragmentationGroup.cpp -echo " CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o" - CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp -echo " CXX RayPlatform/memory/DefragmentationLane.o" - CXX RayPlatform/memory/DefragmentationLane.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DefragmentationLane.cpp -echo " CXX RayPlatform/memory/DirtyBuffer.o" - CXX RayPlatform/memory/DirtyBuffer.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp -echo " CXX RayPlatform/routing/ConnectionGraph.o" - CXX RayPlatform/routing/ConnectionGraph.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/ConnectionGraph.cpp -echo " CXX RayPlatform/routing/GraphImplementation.o" - CXX RayPlatform/routing/GraphImplementation.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp -echo " CXX RayPlatform/routing/GraphImplementationRandom.o" - CXX RayPlatform/routing/GraphImplementationRandom.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationRandom.cpp -RayPlatform/routing/GraphImplementation.cpp: In member function 'void GraphImplementation::computeRoutes()': -RayPlatform/routing/GraphImplementation.cpp:252:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 252 | std::random_shuffle(pairs.begin(),pairs.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/algorithm:61, - from RayPlatform/routing/GraphImplementation.cpp:26: -/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here - 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -RayPlatform/routing/GraphImplementationRandom.cpp: In member function 'virtual void GraphImplementationRandom::makeConnections(int)': -RayPlatform/routing/GraphImplementationRandom.cpp:67:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 67 | std::random_shuffle(identifiers.begin(),identifiers.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/algorithm:61, - from RayPlatform/routing/GraphImplementationRandom.cpp:25: -/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here - 4491 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -echo " CXX RayPlatform/routing/GraphImplementationComplete.o" - CXX RayPlatform/routing/GraphImplementationComplete.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationComplete.cpp -echo " CXX RayPlatform/routing/GraphImplementationDeBruijn.o" - CXX RayPlatform/routing/GraphImplementationDeBruijn.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationDeBruijn.cpp -echo " CXX RayPlatform/routing/GraphImplementationKautz.o" - CXX RayPlatform/routing/GraphImplementationKautz.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationKautz.cpp -echo " CXX RayPlatform/routing/GraphImplementationExperimental.o" - CXX RayPlatform/routing/GraphImplementationExperimental.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp -echo " CXX RayPlatform/routing/GraphImplementationGroup.o" - CXX RayPlatform/routing/GraphImplementationGroup.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp -echo " CXX RayPlatform/routing/Polytope.o" - CXX RayPlatform/routing/Polytope.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp -echo " CXX RayPlatform/routing/Torus.o" - CXX RayPlatform/routing/Torus.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Torus.o RayPlatform/routing/Torus.cpp -echo " CXX RayPlatform/communication/mpi_tags.o" - CXX RayPlatform/communication/mpi_tags.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/mpi_tags.o RayPlatform/communication/mpi_tags.cpp -echo " CXX RayPlatform/communication/VirtualCommunicator.o" - CXX RayPlatform/communication/VirtualCommunicator.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/VirtualCommunicator.cpp -echo " CXX RayPlatform/communication/BufferedData.o" - CXX RayPlatform/communication/BufferedData.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/BufferedData.o RayPlatform/communication/BufferedData.cpp -echo " CXX RayPlatform/communication/Message.o" - CXX RayPlatform/communication/Message.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/Message.o RayPlatform/communication/Message.cpp -echo " CXX RayPlatform/communication/MessagesHandler.o" - CXX RayPlatform/communication/MessagesHandler.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessagesHandler.cpp -echo " CXX RayPlatform/communication/MessageQueue.o" - CXX RayPlatform/communication/MessageQueue.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageQueue.cpp -echo " AR libRay.a" - AR libRay.a -ar rcs libRay.a code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o -echo " CXX RayPlatform/communication/MessageRouter.o" - CXX RayPlatform/communication/MessageRouter.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageRouter.o RayPlatform/communication/MessageRouter.cpp echo " CXX RayPlatform/scheduling/VirtualProcessor.o" CXX RayPlatform/scheduling/VirtualProcessor.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/VirtualProcessor.cpp @@ -2849,6 +2882,36 @@ echo " CXX RayPlatform/profiling/Profiler.o" CXX RayPlatform/profiling/Profiler.o arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Profiler.cpp +echo " CXX RayPlatform/profiling/Derivative.o" + CXX RayPlatform/profiling/Derivative.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Derivative.o RayPlatform/profiling/Derivative.cpp +echo " CXX RayPlatform/profiling/TickLogger.o" + CXX RayPlatform/profiling/TickLogger.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TickLogger.cpp +echo " CXX RayPlatform/profiling/TimePrinter.o" + CXX RayPlatform/profiling/TimePrinter.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/TimePrinter.cpp +echo " CXX RayPlatform/profiling/ProcessStatus.o" + CXX RayPlatform/profiling/ProcessStatus.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/ProcessStatus.o RayPlatform/profiling/ProcessStatus.cpp +echo " CXX RayPlatform/handlers/MasterModeExecutor.o" + CXX RayPlatform/handlers/MasterModeExecutor.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/MasterModeExecutor.cpp +echo " CXX RayPlatform/handlers/SlaveModeExecutor.o" + CXX RayPlatform/handlers/SlaveModeExecutor.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp +echo " CXX RayPlatform/handlers/MessageTagExecutor.o" + CXX RayPlatform/handlers/MessageTagExecutor.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/handlers/MessageTagExecutor.cpp +echo " CXX RayPlatform/cryptography/crypto.o" + CXX RayPlatform/cryptography/crypto.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/cryptography/crypto.o RayPlatform/cryptography/crypto.cpp +echo " CXX RayPlatform/store/KeyValueStore.o" + CXX RayPlatform/store/KeyValueStore.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStore.cpp +echo " CXX RayPlatform/store/KeyValueStoreItem.o" + CXX RayPlatform/store/KeyValueStoreItem.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreItem.cpp In file included from /usr/include/c++/14/map:62, from ./RayPlatform/profiling/Profiler.h:28, from RayPlatform/core/ComputeCore.h:38, @@ -2857,6 +2920,12 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +echo " CXX RayPlatform/store/KeyValueStoreRequest.o" + CXX RayPlatform/store/KeyValueStoreRequest.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/store/KeyValueStoreRequest.cpp +echo " CXX RayPlatform/actors/Actor.o" + CXX RayPlatform/actors/Actor.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Actor.o RayPlatform/actors/Actor.cpp In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = RegisteredPlugin; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'PluginHandle ComputeCore::allocatePluginHandle()' at RayPlatform/core/ComputeCore.cpp:1626:18: @@ -2867,6 +2936,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX RayPlatform/actors/Playground.o" + CXX RayPlatform/actors/Playground.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Playground.o RayPlatform/actors/Playground.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = RegisteredPlugin; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'SlaveMode ComputeCore::allocateSlaveModeHandle(PluginHandle)' at RayPlatform/core/ComputeCore.cpp:1659:18: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -2876,6 +2948,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " CXX RayPlatform/files/FileReader.o" + CXX RayPlatform/files/FileReader.o +arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/files/FileReader.o RayPlatform/files/FileReader.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = RegisteredPlugin; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'MasterMode ComputeCore::allocateMasterModeHandle(PluginHandle)' at RayPlatform/core/ComputeCore.cpp:1696:18: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -3065,12 +3140,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX RayPlatform/profiling/Derivative.o" - CXX RayPlatform/profiling/Derivative.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Derivative.o RayPlatform/profiling/Derivative.cpp -echo " CXX RayPlatform/profiling/TickLogger.o" - CXX RayPlatform/profiling/TickLogger.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TickLogger.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = RegisteredPlugin; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void ComputeCore::setMessageTagSymbol(PluginHandle, MessageTag, const char*)' at RayPlatform/core/ComputeCore.cpp:1600:18: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -3080,6 +3149,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +echo " AR libRay.a" + AR libRay.a +ar rcs libRay.a code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = RegisteredPlugin; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void ComputeCore::setPluginName(PluginHandle, const char*)' at RayPlatform/core/ComputeCore.cpp:1798:18, inlined from 'void ComputeCore::registerDummyPlugin()' at RayPlatform/core/ComputeCore.cpp:1434:21: @@ -3165,9 +3237,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX RayPlatform/profiling/TimePrinter.o" - CXX RayPlatform/profiling/TimePrinter.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/TimePrinter.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = RegisteredPlugin; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'bool ComputeCore::validationMasterModeSymbolRegistered(PluginHandle, const char*)' at RayPlatform/core/ComputeCore.cpp:1976:63: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -3204,9 +3273,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX RayPlatform/profiling/ProcessStatus.o" - CXX RayPlatform/profiling/ProcessStatus.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/ProcessStatus.o RayPlatform/profiling/ProcessStatus.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long unsigned int; _Tp = RegisteredPlugin; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void ComputeCore::setObjectSymbol(PluginHandle, void*, const char*)' at RayPlatform/core/ComputeCore.cpp:2233:18: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -3225,36 +3291,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -echo " CXX RayPlatform/handlers/MasterModeExecutor.o" - CXX RayPlatform/handlers/MasterModeExecutor.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/MasterModeExecutor.cpp -echo " CXX RayPlatform/handlers/SlaveModeExecutor.o" - CXX RayPlatform/handlers/SlaveModeExecutor.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp -echo " CXX RayPlatform/handlers/MessageTagExecutor.o" - CXX RayPlatform/handlers/MessageTagExecutor.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/handlers/MessageTagExecutor.cpp -echo " CXX RayPlatform/cryptography/crypto.o" - CXX RayPlatform/cryptography/crypto.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/cryptography/crypto.o RayPlatform/cryptography/crypto.cpp -echo " CXX RayPlatform/store/KeyValueStore.o" - CXX RayPlatform/store/KeyValueStore.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStore.cpp -echo " CXX RayPlatform/store/KeyValueStoreItem.o" - CXX RayPlatform/store/KeyValueStoreItem.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreItem.cpp -echo " CXX RayPlatform/store/KeyValueStoreRequest.o" - CXX RayPlatform/store/KeyValueStoreRequest.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/store/KeyValueStoreRequest.cpp -echo " CXX RayPlatform/actors/Actor.o" - CXX RayPlatform/actors/Actor.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Actor.o RayPlatform/actors/Actor.cpp -echo " CXX RayPlatform/actors/Playground.o" - CXX RayPlatform/actors/Playground.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Playground.o RayPlatform/actors/Playground.cpp -echo " CXX RayPlatform/files/FileReader.o" - CXX RayPlatform/files/FileReader.o -arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/lib/arm-linux-gnueabihf/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/files/FileReader.o RayPlatform/files/FileReader.cpp echo " AR libRayPlatform.a" AR libRayPlatform.a ar rcs libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o @@ -3274,7 +3310,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - make -j3 install DESTDIR=/build/reproducible-path/ray-2.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + make -j6 install DESTDIR=/build/reproducible-path/ray-2.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ray-2.3.1' mkdir -p install-prefix echo "" @@ -3319,10 +3355,10 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'ray-doc' in '../ray-doc_2.3.1-9_all.deb'. -dpkg-deb: building package 'ray' in '../ray_2.3.1-9_armhf.deb'. dpkg-deb: building package 'ray-extra' in '../ray-extra_2.3.1-9_all.deb'. +dpkg-deb: building package 'ray-doc' in '../ray-doc_2.3.1-9_all.deb'. dpkg-deb: building package 'ray-dbgsym' in '../ray-dbgsym_2.3.1-9_armhf.deb'. +dpkg-deb: building package 'ray' in '../ray_2.3.1-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../ray_2.3.1-9_armhf.buildinfo dpkg-genchanges --build=binary -O../ray_2.3.1-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3330,12 +3366,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/23063/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/23063/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/32630 and its subdirectories -I: Current time: Wed Dec 25 10:24:35 -12 2024 -I: pbuilder-time-stamp: 1735165475 +I: removing directory /srv/workspace/pbuilder/23063 and its subdirectories +I: Current time: Thu Dec 26 12:56:48 +14 2024 +I: pbuilder-time-stamp: 1735167408