Diff of the two buildlogs: -- --- b1/build.log 2025-01-22 01:11:18.207376621 +0000 +++ b2/build.log 2025-01-22 01:55:33.404070563 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jan 21 13:03:14 -12 2025 -I: pbuilder-time-stamp: 1737507794 +I: Current time: Wed Jan 22 15:11:34 +14 2025 +I: pbuilder-time-stamp: 1737508294 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying fix_boost_linkage.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/9666/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22776/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 22 01:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22776/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22776/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='32db4c4b95cf4d9b829b93e6f03bac40' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='9666' - PS1='# ' - PS2='> ' + INVOCATION_ID=c534a1a5130c41bfba501c13c9564123 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22776 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3LWJqcbU/pbuilderrc_vD0G --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3LWJqcbU/b1 --logfile b1/build.log python-freecontact_1.1-9.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3LWJqcbU/pbuilderrc_djc4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3LWJqcbU/b2 --logfile b2/build.log python-freecontact_1.1-9.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64c 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/9666/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/22776/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -210,7 +242,7 @@ Get: 92 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.12.8-1 [1048 B] Get: 93 http://deb.debian.org/debian trixie/main armhf python3.13-dev armhf 3.13.1-3 [504 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf python3-all-dev armhf 3.12.8-1 [1068 B] -Fetched 60.1 MB in 1s (40.4 MB/s) +Fetched 60.1 MB in 5s (13.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19569 files and directories currently installed.) @@ -528,8 +560,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Jan 22 01:04:58 UTC 2025. -Universal Time is now: Wed Jan 22 01:04:58 UTC 2025. +Local time is now: Wed Jan 22 01:15:08 UTC 2025. +Universal Time is now: Wed Jan 22 01:15:08 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:armhf (3.13.1-3) ... @@ -617,7 +649,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freecontact_1.1-9_source.changes +I: user script /srv/workspace/pbuilder/22776/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/22776/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-freecontact_1.1-9_source.changes dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-9 dpkg-buildpackage: info: source distribution unstable @@ -674,28 +710,28 @@ pybuild --test -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads -total weight (variation) of alignment = 620.777515304633 +306/1000total weight (variation) of alignment = 620.777515304633 -seq weight loop for 1000 seqs took 0.288544 secs +seq weight loop for 1000 seqs took 0.506229 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.238799 secs +calculated pair frequency table in 1.37939 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 14.7688 secs, inverted matrix (incl LUf) in 43.9883 secs +LU factorization took 130.136 secs, inverted matrix (incl LUf) in 404.142 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 -all done in 44.9455 secs +all done in 408.552 secs will use 1 OMP threads -111/1000total weight (variation) of alignment = 561.595172234625 +582/1000total weight (variation) of alignment = 561.595172234625 -seq weight loop for 1000 seqs took 0.14813 secs +seq weight loop for 1000 seqs took 0.92559 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.210851 secs +calculated pair frequency table in 2.31222 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) @@ -713,50 +749,50 @@ cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... -shrank covariance matrix in 20.2682 secs +shrank covariance matrix in 167.662 secs will try rho 0.00178064, exact solution  iteration = 1will use 1 OMP threads -total weight (variation) of alignment = 620.777515304633 +177/1000total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.231567 secs +calculated pair frequency table in 1.21384 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 15.3289 secs, inverted matrix (incl LUf) in 44.0103 secs +LU factorization took 83.4642 secs, inverted matrix (incl LUf) in 339.638 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 . ---------------------------------------------------------------------- -Ran 3 tests in 112.871s +Ran 3 tests in 927.917s OK I: pybuild base:311: python3.12 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 -seq weight loop for 1000 seqs took 0.151122 secs +seq weight loop for 1000 seqs took 0.764559 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.247902 secs +calculated pair frequency table in 2.33877 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 15.2003 secs, inverted matrix (incl LUf) in 44.1884 secs +LU factorization took 124.713 secs, inverted matrix (incl LUf) in 375.436 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 -all done in 44.9932 secs +all done in 381.1 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 -seq weight loop for 1000 seqs took 0.150628 secs +seq weight loop for 1000 seqs took 0.582976 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.224561 secs +calculated pair frequency table in 1.69073 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) @@ -774,27 +810,27 @@ cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... -shrank covariance matrix in 20.4369 secs +shrank covariance matrix in 126.682 secs will try rho 0.00178064, exact solution  iteration = 1will use 1 OMP threads -total weight (variation) of alignment = 620.777515304633 +706/1000total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.236097 secs +calculated pair frequency table in 1.40022 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 14.9748 secs, inverted matrix (incl LUf) in 43.0944 secs +LU factorization took 128.91 secs, inverted matrix (incl LUf) in 389.786 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 . ---------------------------------------------------------------------- -Ran 3 tests in 112.163s +Ran 3 tests in 908.519s OK - rm -fr -- /tmp/dh-xdg-rundir-8qIyoAd3 + rm -fr -- /tmp/dh-xdg-rundir-JPzvg_ye make[1]: Leaving directory '/build/reproducible-path/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir @@ -852,9 +888,9 @@ D: dh_python3 dh_python3:205: processing package python3-freecontact... D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.12/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.13/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ -D: dh_python3 fs:338: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.13'), Version('3.12')}, 'ext_no_version': set()} +D: dh_python3 fs:338: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-freecontact -D: dh_python3 depends:253: D={'python3 (<< 3.14)', 'python3 (>= 3.12~)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir @@ -924,8 +960,8 @@ dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dpkg-deb --root-owner-group --build debian/python3-freecontact .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-freecontact/dbgsym-root .. -dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-9_armhf.deb'. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-9_armhf.deb'. +dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../python-freecontact_1.1-9_armhf.buildinfo dpkg-genchanges --build=binary -O../python-freecontact_1.1-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -933,12 +969,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22776/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22776/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/9666 and its subdirectories -I: Current time: Tue Jan 21 13:11:14 -12 2025 -I: pbuilder-time-stamp: 1737508274 +I: removing directory /srv/workspace/pbuilder/22776 and its subdirectories +I: Current time: Wed Jan 22 15:55:28 +14 2025 +I: pbuilder-time-stamp: 1737510928