Diff of the two buildlogs: -- --- b1/build.log 2024-04-04 01:03:29.399476994 +0000 +++ b2/build.log 2024-04-04 01:06:04.844883125 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 3 13:00:29 -12 2024 -I: pbuilder-time-stamp: 1712192429 +I: Current time: Thu Apr 4 15:03:51 +14 2024 +I: pbuilder-time-stamp: 1712192631 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying use_debian_packaged_zlib.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/32538/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20244/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 4 01:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20244/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20244/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='ddc4f9a8e0d14be1bdc3bcf99b3e4211' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='32538' - PS1='# ' - PS2='> ' + INVOCATION_ID=8c40e2dcbc5944ad9fe16ebd694ed743 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20244 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EcTwDrKW/pbuilderrc_3AOS --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EcTwDrKW/b1 --logfile b1/build.log pyfastx_2.1.0-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EcTwDrKW/pbuilderrc_OrcV --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EcTwDrKW/b2 --logfile b2/build.log pyfastx_2.1.0-1.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32c 6.1.0-18-armmp-lpae #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 3 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/32538/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 2 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/20244/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -203,7 +235,7 @@ Get: 76 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.24.2-2 [4016 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf python3-indexed-gzip armhf 1.7.0-1.1 [844 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf python3-pyfaidx all 0.8.1.1-1 [29.0 kB] -Fetched 51.4 MB in 1s (47.2 MB/s) +Fetched 51.4 MB in 1s (57.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19637 files and directories currently installed.) @@ -461,8 +493,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Apr 4 01:01:18 UTC 2024. -Universal Time is now: Thu Apr 4 01:01:18 UTC 2024. +Local time is now: Thu Apr 4 01:04:30 UTC 2024. +Universal Time is now: Thu Apr 4 01:04:30 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -541,7 +573,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pyfastx-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pyfastx_2.1.0-1_source.changes +I: user script /srv/workspace/pbuilder/20244/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/20244/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pyfastx-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pyfastx_2.1.0-1_source.changes dpkg-buildpackage: info: source package pyfastx dpkg-buildpackage: info: source version 2.1.0-1 dpkg-buildpackage: info: source distribution unstable @@ -742,6 +778,11 @@ writing manifest file 'pyfastx.egg-info/SOURCES.txt' running build_ext copying /build/reproducible-path/pyfastx-2.1.0/.pybuild/cpython3_3.12/build/pyfastx.cpython-312-arm-linux-gnueabihf.so -> +test_exception (tests.test_fastx.FastxTest.test_exception) ... ok +test_fasta_iter (tests.test_fastx.FastxTest.test_fasta_iter) ... ok +test_fasta_upper (tests.test_fastx.FastxTest.test_fasta_upper) ... ok +test_fastq_iter (tests.test_fastx.FastxTest.test_fastq_iter) ... ok +test_fastx_repr (tests.test_fastx.FastxTest.test_fastx_repr) ... ok test_build (tests.test_fasta.FastaTest.test_build) ... ok test_exception (tests.test_fasta.FastaTest.test_exception) ... ok test_fasta (tests.test_fasta.FastaTest.test_fasta) ... ok @@ -758,21 +799,6 @@ test_seq_flank (tests.test_fasta.FastaTest.test_seq_flank) ... ok test_seq_type (tests.test_fasta.FastaTest.test_seq_type) ... ok test_statistics (tests.test_fasta.FastaTest.test_statistics) ... ok -test_exception (tests.test_fqkeys.FastxTest.test_exception) ... ok -test_fastq_key (tests.test_fqkeys.FastxTest.test_fastq_key) ... ok -test_id_exception (tests.test_fakeys.IdentifierTest.test_id_exception) ... ok -test_key_identifier (tests.test_fakeys.IdentifierTest.test_key_identifier) ... ok -test_key_repr (tests.test_fakeys.IdentifierTest.test_key_repr) ... ok -test_key_slice (tests.test_fakeys.IdentifierTest.test_key_slice) ... ok -test_keys_filter (tests.test_fakeys.IdentifierTest.test_keys_filter) ... ok -test_keys_sort (tests.test_fakeys.IdentifierTest.test_keys_sort) ... ok -test_exception (tests.test_fastx.FastxTest.test_exception) ... ok -test_fasta_iter (tests.test_fastx.FastxTest.test_fasta_iter) ... ok -test_fasta_upper (tests.test_fastx.FastxTest.test_fasta_upper) ... ok -test_fastq_iter (tests.test_fastx.FastxTest.test_fastq_iter) ... ok -test_fastx_repr (tests.test_fastx.FastxTest.test_fastx_repr) ... ok -test_seq_by_index (tests.test_sequence_error.SequenceErrorTest.test_seq_by_index) ... ok -test_seq_by_key (tests.test_sequence_error.SequenceErrorTest.test_seq_by_key) ... ok test_read (tests.test_read.ReadTest.test_read) ... ok test_read_description (tests.test_read.ReadTest.test_read_description) ... ok test_read_raw (tests.test_read.ReadTest.test_read_raw) ... ok @@ -788,6 +814,10 @@ test_seq_repr (tests.test_sequence.SequenceTest.test_seq_repr) ... ok test_seq_reverse_complement (tests.test_sequence.SequenceTest.test_seq_reverse_complement) ... ok test_seq_slice (tests.test_sequence.SequenceTest.test_seq_slice) ... ok +test_seq_by_index (tests.test_sequence_error.SequenceErrorTest.test_seq_by_index) ... ok +test_seq_by_key (tests.test_sequence_error.SequenceErrorTest.test_seq_by_key) ... ok +test_exception (tests.test_fqkeys.FastxTest.test_exception) ... ok +test_fastq_key (tests.test_fqkeys.FastxTest.test_fastq_key) ... ok test_build (tests.test_fastq.FastqTest.test_build) ... ok test_exception (tests.test_fastq.FastqTest.test_exception) ... ok test_fastq (tests.test_fastq.FastqTest.test_fastq) ... ok @@ -798,9 +828,15 @@ test_platform (tests.test_fastq.FastqTest.test_platform) ... ok test_read_len (tests.test_fastq.FastqTest.test_read_len) ... ok test_repr (tests.test_fastq.FastqTest.test_repr) ... ok +test_id_exception (tests.test_fakeys.IdentifierTest.test_id_exception) ... ok +test_key_identifier (tests.test_fakeys.IdentifierTest.test_key_identifier) ... ok +test_key_repr (tests.test_fakeys.IdentifierTest.test_key_repr) ... ok +test_key_slice (tests.test_fakeys.IdentifierTest.test_key_slice) ... ok +test_keys_filter (tests.test_fakeys.IdentifierTest.test_keys_filter) ... ok +test_keys_sort (tests.test_fakeys.IdentifierTest.test_keys_sort) ... ok ---------------------------------------------------------------------- -Ran 56 tests in 12.388s +Ran 56 tests in 9.222s OK pyfastx: 2.1.0; zlib: 1.3; sqlite: 3.45.1; zran: 1.7.0 @@ -851,6 +887,11 @@ writing manifest file 'pyfastx.egg-info/SOURCES.txt' running build_ext copying /build/reproducible-path/pyfastx-2.1.0/.pybuild/cpython3_3.11/build/pyfastx.cpython-311-arm-linux-gnueabihf.so -> +test_exception (tests.test_fastx.FastxTest.test_exception) ... ok +test_fasta_iter (tests.test_fastx.FastxTest.test_fasta_iter) ... ok +test_fasta_upper (tests.test_fastx.FastxTest.test_fasta_upper) ... ok +test_fastq_iter (tests.test_fastx.FastxTest.test_fastq_iter) ... ok +test_fastx_repr (tests.test_fastx.FastxTest.test_fastx_repr) ... ok test_build (tests.test_fasta.FastaTest.test_build) ... ok test_exception (tests.test_fasta.FastaTest.test_exception) ... ok test_fasta (tests.test_fasta.FastaTest.test_fasta) ... ok @@ -867,21 +908,6 @@ test_seq_flank (tests.test_fasta.FastaTest.test_seq_flank) ... ok test_seq_type (tests.test_fasta.FastaTest.test_seq_type) ... ok test_statistics (tests.test_fasta.FastaTest.test_statistics) ... ok -test_exception (tests.test_fqkeys.FastxTest.test_exception) ... ok -test_fastq_key (tests.test_fqkeys.FastxTest.test_fastq_key) ... ok -test_id_exception (tests.test_fakeys.IdentifierTest.test_id_exception) ... ok -test_key_identifier (tests.test_fakeys.IdentifierTest.test_key_identifier) ... ok -test_key_repr (tests.test_fakeys.IdentifierTest.test_key_repr) ... ok -test_key_slice (tests.test_fakeys.IdentifierTest.test_key_slice) ... ok -test_keys_filter (tests.test_fakeys.IdentifierTest.test_keys_filter) ... ok -test_keys_sort (tests.test_fakeys.IdentifierTest.test_keys_sort) ... ok -test_exception (tests.test_fastx.FastxTest.test_exception) ... ok -test_fasta_iter (tests.test_fastx.FastxTest.test_fasta_iter) ... ok -test_fasta_upper (tests.test_fastx.FastxTest.test_fasta_upper) ... ok -test_fastq_iter (tests.test_fastx.FastxTest.test_fastq_iter) ... ok -test_fastx_repr (tests.test_fastx.FastxTest.test_fastx_repr) ... ok -test_seq_by_index (tests.test_sequence_error.SequenceErrorTest.test_seq_by_index) ... ok -test_seq_by_key (tests.test_sequence_error.SequenceErrorTest.test_seq_by_key) ... ok test_read (tests.test_read.ReadTest.test_read) ... ok test_read_description (tests.test_read.ReadTest.test_read_description) ... ok test_read_raw (tests.test_read.ReadTest.test_read_raw) ... ok @@ -897,6 +923,10 @@ test_seq_repr (tests.test_sequence.SequenceTest.test_seq_repr) ... ok test_seq_reverse_complement (tests.test_sequence.SequenceTest.test_seq_reverse_complement) ... ok test_seq_slice (tests.test_sequence.SequenceTest.test_seq_slice) ... ok +test_seq_by_index (tests.test_sequence_error.SequenceErrorTest.test_seq_by_index) ... ok +test_seq_by_key (tests.test_sequence_error.SequenceErrorTest.test_seq_by_key) ... ok +test_exception (tests.test_fqkeys.FastxTest.test_exception) ... ok +test_fastq_key (tests.test_fqkeys.FastxTest.test_fastq_key) ... ok test_build (tests.test_fastq.FastqTest.test_build) ... ok test_exception (tests.test_fastq.FastqTest.test_exception) ... ok test_fastq (tests.test_fastq.FastqTest.test_fastq) ... ok @@ -907,9 +937,15 @@ test_platform (tests.test_fastq.FastqTest.test_platform) ... ok test_read_len (tests.test_fastq.FastqTest.test_read_len) ... ok test_repr (tests.test_fastq.FastqTest.test_repr) ... ok +test_id_exception (tests.test_fakeys.IdentifierTest.test_id_exception) ... ok +test_key_identifier (tests.test_fakeys.IdentifierTest.test_key_identifier) ... ok +test_key_repr (tests.test_fakeys.IdentifierTest.test_key_repr) ... ok +test_key_slice (tests.test_fakeys.IdentifierTest.test_key_slice) ... ok +test_keys_filter (tests.test_fakeys.IdentifierTest.test_keys_filter) ... ok +test_keys_sort (tests.test_fakeys.IdentifierTest.test_keys_sort) ... ok ---------------------------------------------------------------------- -Ran 56 tests in 13.188s +Ran 56 tests in 7.504s OK pyfastx: 2.1.0; zlib: 1.3; sqlite: 3.45.1; zran: 1.7.0 @@ -940,8 +976,8 @@ creating /build/reproducible-path/pyfastx-2.1.0/debian/tmp/usr/lib creating /build/reproducible-path/pyfastx-2.1.0/debian/tmp/usr/lib/python3.12 creating /build/reproducible-path/pyfastx-2.1.0/debian/tmp/usr/lib/python3.12/dist-packages -copying /build/reproducible-path/pyfastx-2.1.0/.pybuild/cpython3_3.12/build/pyfastx.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/pyfastx-2.1.0/debian/tmp/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pyfastx-2.1.0/.pybuild/cpython3_3.12/build/pyfastxcli.py -> /build/reproducible-path/pyfastx-2.1.0/debian/tmp/usr/lib/python3.12/dist-packages +copying /build/reproducible-path/pyfastx-2.1.0/.pybuild/cpython3_3.12/build/pyfastx.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/pyfastx-2.1.0/debian/tmp/usr/lib/python3.12/dist-packages byte-compiling /build/reproducible-path/pyfastx-2.1.0/debian/tmp/usr/lib/python3.12/dist-packages/pyfastxcli.py to pyfastxcli.cpython-312.pyc running install_egg_info running egg_info @@ -1043,12 +1079,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20244/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20244/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/32538 and its subdirectories -I: Current time: Wed Apr 3 13:03:22 -12 2024 -I: pbuilder-time-stamp: 1712192602 +I: removing directory /srv/workspace/pbuilder/20244 and its subdirectories +I: Current time: Thu Apr 4 15:05:58 +14 2024 +I: pbuilder-time-stamp: 1712192758