Diff of the two buildlogs: -- --- b1/build.log 2024-05-13 06:13:07.149119974 +0000 +++ b2/build.log 2024-05-13 07:11:19.864392848 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 12 18:04:51 -12 2024 -I: pbuilder-time-stamp: 1715580291 +I: Current time: Mon May 13 20:13:52 +14 2024 +I: pbuilder-time-stamp: 1715580832 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying pcre.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3529/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5217/tmp/hooks/D01_modify_environment starting +debug: Running on ff64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 13 06:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5217/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5217/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='a1bc09372ec747d9bc1d7eb12dee7ced' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3529' - PS1='# ' - PS2='> ' + INVOCATION_ID=bf2280b5fb4445afafafe285b6e8d5fc + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=5217 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.U6ov8pyz/pbuilderrc_tpdT --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.U6ov8pyz/b1 --logfile b1/build.log plast_2.3.2+dfsg-10.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.U6ov8pyz/pbuilderrc_W6aZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.U6ov8pyz/b2 --logfile b2/build.log plast_2.3.2+dfsg-10.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 10 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3529/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 11:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/5217/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -283,7 +315,7 @@ Get: 160 http://deb.debian.org/debian trixie/main armhf libpcre2-posix3 armhf 10.42-4+b1 [55.3 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf libpcre2-dev armhf 10.42-4+b1 [668 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf libsimde-dev all 0.8.2-1 [465 kB] -Fetched 194 MB in 3s (62.3 MB/s) +Fetched 194 MB in 20s (9601 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19445 files and directories currently installed.) @@ -1138,7 +1170,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plast_2.3.2+dfsg-10_source.changes +I: user script /srv/workspace/pbuilder/5217/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/5217/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../plast_2.3.2+dfsg-10_source.changes dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-10 dpkg-buildpackage: info: source distribution unstable @@ -1185,8 +1221,8 @@ -- Found JNI: /usr/lib/jvm/default-java/include found components: AWT JVM --- Configuring done (1.8s) --- Generating done (0.1s) +-- Configuring done (21.3s) +-- Generating done (2.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1204,7 +1240,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/plast-2.3.2+dfsg -B/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -1218,34 +1254,36 @@ cd /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build +make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' -make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' +[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o [ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp [ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp -[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp +[ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp -[ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp -[ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/ScoreMatrix.cpp -[ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o 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CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp -[ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o +[ 6%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF 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CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp -[ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o +[ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspExtensionCmd.cpp -[ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o +[ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspGeneratorCmd.cpp -[ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o +[ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp:23: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, misc::Range >}; _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, misc::Range > >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, misc::Range >}; _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'std::vector, misc::Range > > algo::core::impl::DefaultEnvironment::buildUri(database::IDatabaseQuickReader*, database::IDatabaseQuickReader*)' at /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp:523:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, misc::Range >*, std::vector, misc::Range > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o +[ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp -[ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp -[ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o +[ 8%] Building CXX object 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/build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp -[ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o +[ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c 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CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o +[ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c 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CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp -[ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -c 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CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp -[ 13%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/common/AbstractPipeHitIterator.cpp +[ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp +[ 11%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp +[ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ -[ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp +[ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, @@ -1352,40 +1368,50 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 14%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/CompositionHitIterator.cpp -[ 14%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp -[ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o 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/build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/ReverseStrandVisitor.cpp -[ 28%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp -[ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o +[ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp -[ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp:23: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, misc::Range >}; _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, misc::Range > >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, misc::Range >}; _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'std::vector, misc::Range > > algo::core::impl::DefaultEnvironment::buildUri(database::IDatabaseQuickReader*, database::IDatabaseQuickReader*)' at /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp:523:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, misc::Range >*, std::vector, misc::Range > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/SortContainerVisitor.cpp -[ 29%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp -[ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o +[ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp -[ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o +[ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp -[ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o +[ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/algo/stats/impl/Statistics.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp:23: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const statistics::IQueryInformation::SequenceInfo&}; _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator]', - inlined from 'void statistics::impl::QueryInformation::build()' at /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp:410:46: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 31%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp -[ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o +[ 23%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp +[ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp -[ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o +[ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp -/build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': -/build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 415 | register double innerSum; - | ^~~~~~~~ -[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o +[ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp -[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o +[ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp -[ 32%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp +[ 25%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/ScoreMatrix.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, @@ -1507,6 +1481,8 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:146:26: @@ -1518,20 +1494,26 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp -[ 32%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp -[ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o +[ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp -[ 34%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp -[ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o +[ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp -[ 34%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp -[ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o +[ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp +[ 26%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/common/AbstractHitIterator.cpp +[ 26%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/common/AbstractPipeHitIterator.cpp +[ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp +[ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp +[ 28%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/CompositionHitIterator.cpp +[ 28%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/FullGapHitIterator.cpp +[ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, @@ -1544,10 +1526,8 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 34%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:48:33: @@ -1560,12 +1540,6 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp -[ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp -[ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); @@ -1601,6 +1575,8 @@ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, @@ -1620,90 +1596,73 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:254:32: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp -[ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp -[ 37%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/HspContainer.cpp -[ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o +[ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp -[ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o +[ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp -[ 38%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/ReaderAlignmentContainer.cpp -[ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o +[ 31%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIterator.cpp +[ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp -[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o +[ 31%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp +[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp -[ 39%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/UngapAlignmentContainer.cpp -[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o +[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp -[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o +[ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp -[ 40%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp -[ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o +[ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp -[ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o +[ 33%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp +[ 34%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o +[ 34%] Building 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CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp +[ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp +[ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp +[ 36%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspExtensionCmd.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ -[ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/core/api/Alignment.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/api/IAlignmentFilter.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp:28, - from /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void alignment::filter::impl::AlignmentFilterUnaryOperator::configure(const std::vector >&) [with T = double]' at /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AlignmentFilterOperator.hpp:183:31, - inlined from 'alignment::filter::impl::AlignmentFilterUnaryOperator::AlignmentFilterUnaryOperator(const std::vector >&) [with T = double]' at /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AlignmentFilterOperator.hpp:120:19: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp -[ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o +[ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp -[ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o +[ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterFactory.cpp -[ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o +[ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp +[ 38%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp +[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp -[ 45%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterOperator.cpp -[ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o +[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp +[ 39%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, @@ -1729,56 +1688,84 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o +[ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp -[ 46%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterXML.cpp -[ 47%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o +[ 40%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/cc 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static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o +[ 41%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp +[ 41%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c 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/build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp +[ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp -[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o +[ 42%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp +[ 42%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp +[ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp -[ 47%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp -[ 48%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentOverlapCmd.cpp -[ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o +[ 43%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/algo/stats/impl/Statistics.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp:23: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const statistics::IQueryInformation::SequenceInfo&}; _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp -[ 49%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitter.cpp -[ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator]', + inlined from 'void statistics::impl::QueryInformation::build()' at /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp:410:46: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 44%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp +[ 44%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp +[ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp -[ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o +/build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': +/build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 415 | register double innerSum; + | ^~~~~~~~ +[ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp -[ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o +[ 46%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp +[ 46%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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-funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp -[ 50%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitterBanded.cpp -[ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o +[ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp -[ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp -[ 52%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlign.cpp -[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp -[ 52%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp +[ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp +[ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp +[ 48%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ -[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareContainerVisitor.cpp -[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp -[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o +[ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] @@ -1793,16 +1780,20 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o +[ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -[ 54%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o +[ 49%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o +/usr/bin/c++ -D__LINUX__ 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CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp -[ 55%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareResultVisitor.cpp +[ 50%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/UngapAlignmentContainer.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -1822,6 +1813,10 @@ | | | | long int size_t {aka unsigned int} | %02d +[ 51%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp +[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -1844,16 +1839,14 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp -[ 56%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/FilterContainerVisitor.cpp -[ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o +[ 52%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterFactory.cpp +[ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp -[ 56%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp -[ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o +[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': @@ -1871,6 +1864,8 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o +/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'static std::string misc::impl::ObsfucatedString::obsfucate(const std::string&)' at /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:125:29: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -1881,63 +1876,55 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 58%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/ModelBuilderVisitor.cpp -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp -[ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o +[ 54%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o +[ 54%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterOperator.cpp +[ 54%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o +[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp -[ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o +[ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp -[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o +[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp -[ 65%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/QueryReorderVisitor.cpp -[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o +[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp -[ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o +[ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] @@ -1958,20 +1945,43 @@ | | | | long int size_t {aka unsigned int} | %d -[ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o +[ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp -[ 66%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o +[ 61%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c -[ 66%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o +[ 62%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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-ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c -[ 67%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o +[ 63%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/seg.c -[ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o +[ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp -[ 68%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/ReverseStrandVisitor.cpp -[ 68%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/core/api/Alignment.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/api/IAlignmentFilter.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp:28, + from /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void alignment::filter::impl::AlignmentFilterUnaryOperator::configure(const std::vector >&) [with T = double]' at /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AlignmentFilterOperator.hpp:183:31, + inlined from 'alignment::filter::impl::AlignmentFilterUnaryOperator::AlignmentFilterUnaryOperator(const std::vector >&) [with T = double]' at /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AlignmentFilterOperator.hpp:120:19: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 63%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -MF 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-I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp +[ 68%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o +/usr/bin/c++ -D__LINUX__ 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-I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/SortContainerVisitor.cpp [ 70%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp -make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' -[ 70%] Built target PlastLibrary [ 70%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o @@ -2007,6 +2043,8 @@ /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp +[ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, @@ -2015,6 +2053,8 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp:146:26: @@ -2026,44 +2066,16 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp -[ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, - from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31, - from /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, - inlined from 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:48:33: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', - inlined from 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:67:37: -/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1292 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp +[ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); @@ -2099,8 +2111,6 @@ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, @@ -2120,17 +2130,43 @@ /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:254:32: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, + from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31, + from /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:17: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, + inlined from 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:48:33: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', + inlined from 'database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)' at /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp:67:37: +/usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1292 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o @@ -2153,16 +2189,16 @@ /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp -/build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': -/build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 119 | system (tmp); - | ~~~~~~~^~~~~ [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp +/build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': +/build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 119 | system (tmp); + | ~~~~~~~^~~~~ [ 81%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o @@ -2171,6 +2207,15 @@ /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp +[ 83%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o +/usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c +[ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp +/build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static + 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); + | ^~~~~~~~~~~~~~ +[ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, @@ -2196,15 +2241,6 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -/usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c -/build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static - 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); - | ^~~~~~~~~~~~~~ -[ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp -[ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o @@ -2221,14 +2257,20 @@ /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp -/build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': -/build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] - 316 | } - | ^ [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp +[ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp +/build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': +/build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] + 316 | } + | ^ +[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp +[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); @@ -2242,12 +2284,8 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp -[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp -[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp +[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); @@ -2267,10 +2305,18 @@ | | | | long int size_t {aka unsigned int} | %02d -[ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp +[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp +[ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", @@ -2293,16 +2339,6 @@ | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} -[ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp -[ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:9: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'misc::impl::ObsfucatedString::ObsfucatedString(LONG, ...)' at /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp:37:26: @@ -2330,22 +2366,22 @@ /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp -/build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': -/build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 42 | system (ss.str().c_str()); - | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp -/build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': -/build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 46 | fgets (buffer, sizeof(buffer), file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': +/build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 42 | system (ss.str().c_str()); + | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp +/build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': +/build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 46 | fgets (buffer, sizeof(buffer), file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o @@ -2354,18 +2390,18 @@ /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp -[ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp +[ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp -[ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o +[ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp +/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o @@ -2376,10 +2412,10 @@ /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp +[ 97%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o +/usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/dust.c.o -MF CMakeFiles/plast.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 98%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp -[ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o -/usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/dust.c.o -MF CMakeFiles/plast.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': @@ -2447,7 +2483,7 @@ I: Nothing to do for arch:indep binary make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg' dh_auto_install -O--buildsystem=cmake -Nplast-example - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j6 install DESTDIR=/build/reproducible-path/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/plast-2.3.2+dfsg -B/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2458,267 +2494,267 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/types.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStrings.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/obsfucation.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/RangeTree.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/version.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/RangeTree.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/obsfucation.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/types.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/CompleteSubjectDatabaseStats.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/Vector.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStrings.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/OptionsParser.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/Option.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedModel.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeed.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/tools +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/tools --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp --- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp +-- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-arm-linux-gnueabihf' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg' @@ -2755,8 +2791,8 @@ dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'plast-dbgsym' in '../plast-dbgsym_2.3.2+dfsg-10_armhf.deb'. -dpkg-deb: building package 'plast-example' in '../plast-example_2.3.2+dfsg-10_all.deb'. dpkg-deb: building package 'plast' in '../plast_2.3.2+dfsg-10_armhf.deb'. +dpkg-deb: building package 'plast-example' in '../plast-example_2.3.2+dfsg-10_all.deb'. dpkg-genbuildinfo --build=binary -O../plast_2.3.2+dfsg-10_armhf.buildinfo dpkg-genchanges --build=binary -O../plast_2.3.2+dfsg-10_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2764,12 +2800,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/5217/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5217/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3529 and its subdirectories -I: Current time: Sun May 12 18:13:02 -12 2024 -I: pbuilder-time-stamp: 1715580782 +I: removing directory /srv/workspace/pbuilder/5217 and its subdirectories +I: Current time: Mon May 13 21:11:12 +14 2024 +I: pbuilder-time-stamp: 1715584272