Diff of the two buildlogs: -- --- b1/build.log 2024-04-23 21:32:08.929979036 +0000 +++ b2/build.log 2024-04-23 21:55:30.386092171 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Apr 23 07:40:08 -12 2024 -I: pbuilder-time-stamp: 1713901208 +I: Current time: Wed Apr 24 11:32:30 +14 2024 +I: pbuilder-time-stamp: 1713907950 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying drop_deprecated_nisext_for_python3.12_compatibility.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13686/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13206/tmp/hooks/D01_modify_environment starting +debug: Running on virt32b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 23 21:32 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13206/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13206/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='607ec9f6fa694b6890d190e69d3a16f9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13686' - PS1='# ' - PS2='> ' + INVOCATION_ID=bf9fe94c939e4371a7616544d32cd7ef + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=13206 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ztIjjQrz/pbuilderrc_4sZT --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ztIjjQrz/b1 --logfile b1/build.log nibabel_5.2.1-1.dsc' - SUDO_GID='114' - SUDO_UID='109' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ztIjjQrz/pbuilderrc_iD5q --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ztIjjQrz/b2 --logfile b2/build.log nibabel_5.2.1-1.dsc' + SUDO_GID=112 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux ff64a 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 21 07:16 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/13686/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 23 11:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/13206/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -329,7 +361,7 @@ Get: 178 http://deb.debian.org/debian trixie/main armhf python3-werkzeug all 3.0.2-1 [206 kB] Get: 179 http://deb.debian.org/debian trixie/main armhf python3-pytest-httpserver all 1.0.10-1 [21.1 kB] Get: 180 http://deb.debian.org/debian trixie/main armhf python3-texext all 0.6.7-5 [22.5 kB] -Fetched 115 MB in 7s (16.1 MB/s) +Fetched 115 MB in 3s (33.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) @@ -911,8 +943,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Apr 23 19:45:01 UTC 2024. -Universal Time is now: Tue Apr 23 19:45:01 UTC 2024. +Local time is now: Tue Apr 23 21:33:43 UTC 2024. +Universal Time is now: Tue Apr 23 21:33:43 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1088,7 +1120,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/nibabel-5.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nibabel_5.2.1-1_source.changes +I: user script /srv/workspace/pbuilder/13206/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/13206/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nibabel-5.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nibabel_5.2.1-1_source.changes dpkg-buildpackage: info: source package nibabel dpkg-buildpackage: info: source version 5.2.1-1 dpkg-buildpackage: info: source distribution unstable @@ -1105,8 +1141,8 @@ make[1]: Entering directory '/build/reproducible-path/nibabel-5.2.1' /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/nibabel-5.2.1' -/bin/sh: 1: python: not found -/bin/sh: 1: git: not found +/bin/sh: line 1: python: command not found +/bin/sh: line 1: git: command not found /usr/bin/make -C doc clean make[3]: Entering directory '/build/reproducible-path/nibabel-5.2.1/doc' rm -rf source/reference/*.rst @@ -1329,16 +1365,16 @@ Running Sphinx v7.2.6 loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://docs.scipy.org/doc/scipy/objects.inv... loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 127 source files that are out of date @@ -1403,10 +1439,10 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nibabel-5.2.1' PYBUILD_SYSTEM=custom \ -PYBUILD_TEST_ARGS="PATH={dir}/.pybuild/cpython3_{version}/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" \ +PYBUILD_TEST_ARGS="PATH={dir}/.pybuild/cpython3_{version}/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. -I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/build LC_ALL=C.UTF-8 python3.12 -m pytest --verbose +I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/build LC_ALL=C.UTF-8 python3.12 -m pytest --verbose ============================= test session starts ============================== platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 cachedir: .pytest_cache @@ -7009,7 +7045,7 @@ nibabel/tests/test_volumeutils.py::test_a2f_scaled_unscaled PASSED [ 98%] nibabel/tests/test_volumeutils.py::test_a2f_nanpos PASSED [ 98%] nibabel/tests/test_volumeutils.py::test_a2f_bad_scaling PASSED [ 98%] -nibabel/tests/test_volumeutils.py::test_a2f_nan2zero_range PASSED [ 98%] +nibabel/tests/test_volumeutils.py::test_a2f_nan2zero_range SKIPPED (...) [ 98%] nibabel/tests/test_volumeutils.py::test_a2f_non_numeric PASSED [ 99%] nibabel/tests/test_volumeutils.py::test_apply_scaling PASSED [ 99%] nibabel/tests/test_volumeutils.py::test_apply_read_scaling_ints PASSED [ 99%] @@ -7259,17 +7295,13 @@ /build/reproducible-path/nibabel-5.2.1/nibabel/tests/test_scaling.py:133: RuntimeWarning: invalid value encountered in cast assert_array_equal(data_back, [np.array(np.nan).astype(np.int32), 99]) -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters - /build/reproducible-path/nibabel-5.2.1/nibabel/volumeutils.py:1174: RuntimeWarning: overflow encountered in multiply - tst_trans = tst_trans * slope - nisext/tests/test_sexts.py: 18 warnings /build/reproducible-path/nibabel-5.2.1/nisext/sexts.py:199: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if checker(have_version) < checker(version): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 5513 passed, 96 skipped, 40 xfailed, 4 xpassed, 3082 warnings in 2454.09s (0:40:54) = -I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/build LC_ALL=C.UTF-8 python3.11 -m pytest --verbose += 5512 passed, 97 skipped, 40 xfailed, 4 xpassed, 3081 warnings in 474.19s (0:07:54) = +I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/build LC_ALL=C.UTF-8 python3.11 -m pytest --verbose ============================= test session starts ============================== platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.11 cachedir: .pytest_cache @@ -12872,7 +12904,7 @@ nibabel/tests/test_volumeutils.py::test_a2f_scaled_unscaled PASSED [ 98%] nibabel/tests/test_volumeutils.py::test_a2f_nanpos PASSED [ 98%] nibabel/tests/test_volumeutils.py::test_a2f_bad_scaling PASSED [ 98%] -nibabel/tests/test_volumeutils.py::test_a2f_nan2zero_range PASSED [ 98%] +nibabel/tests/test_volumeutils.py::test_a2f_nan2zero_range SKIPPED (...) [ 98%] nibabel/tests/test_volumeutils.py::test_a2f_non_numeric PASSED [ 99%] nibabel/tests/test_volumeutils.py::test_apply_scaling PASSED [ 99%] nibabel/tests/test_volumeutils.py::test_apply_read_scaling_ints PASSED [ 99%] @@ -13094,12 +13126,16 @@ /build/reproducible-path/nibabel-5.2.1/nibabel/tests/test_scaling.py:133: RuntimeWarning: invalid value encountered in cast assert_array_equal(data_back, [np.array(np.nan).astype(np.int32), 99]) +nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters + /build/reproducible-path/nibabel-5.2.1/nibabel/volumeutils.py:1174: RuntimeWarning: overflow encountered in multiply + tst_trans = tst_trans * slope + nisext/tests/test_sexts.py: 18 warnings /build/reproducible-path/nibabel-5.2.1/nisext/sexts.py:199: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if checker(have_version) < checker(version): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 5519 passed, 96 skipped, 35 xfailed, 3 xpassed, 286 warnings in 2290.00s (0:38:10) = += 5518 passed, 97 skipped, 35 xfailed, 3 xpassed, 287 warnings in 475.86s (0:07:55) = make[1]: Leaving directory '/build/reproducible-path/nibabel-5.2.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=build @@ -13170,12 +13206,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/13206/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13206/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13686 and its subdirectories -I: Current time: Tue Apr 23 09:32:02 -12 2024 -I: pbuilder-time-stamp: 1713907922 +I: removing directory /srv/workspace/pbuilder/13206 and its subdirectories +I: Current time: Wed Apr 24 11:55:19 +14 2024 +I: pbuilder-time-stamp: 1713909319