Diff of the two buildlogs: -- --- b1/build.log 2024-10-13 22:22:19.864494682 +0000 +++ b2/build.log 2024-10-13 22:25:35.728155587 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 13 10:21:18 -12 2024 -I: pbuilder-time-stamp: 1728858078 +I: Current time: Mon Oct 14 12:22:32 +14 2024 +I: pbuilder-time-stamp: 1728858152 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying clang.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/10696/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6647/tmp/hooks/D01_modify_environment starting +debug: Running on wbq0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 13 22:23 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6647/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6647/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='0db7caf197c840faa13e2f928fb88d6f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='10696' - PS1='# ' - PS2='> ' + INVOCATION_ID=bca832122f2b4423b71fbd5b137d2c58 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6647 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zVKTazdr/pbuilderrc_3s6q --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zVKTazdr/b1 --logfile b1/build.log ncbi-seg_0.0.20000620-7.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zVKTazdr/pbuilderrc_7XQV --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zVKTazdr/b2 --logfile b2/build.log ncbi-seg_0.0.20000620-7.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64c 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-armmp #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/10696/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/6647/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -144,7 +176,7 @@ Get: 27 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] -Fetched 19.1 MB in 1s (36.9 MB/s) +Fetched 19.1 MB in 2s (11.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) @@ -275,7 +307,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes +I: user script /srv/workspace/pbuilder/6647/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/6647/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes dpkg-buildpackage: info: source package ncbi-seg dpkg-buildpackage: info: source version 0.0.20000620-7 dpkg-buildpackage: info: source distribution unstable @@ -323,7 +359,7 @@ config.status: creating Makefile config.status: executing depfiles commands dh_auto_build - make -j3 + make -j4 make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o seg.o seg.c gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o genwin.o genwin.c @@ -336,6 +372,13 @@ genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] 149 | extern closeseq(); | ^~~~~~~~ +In file included from seg.c:10: +genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] + 146 | extern closedbase(); + | ^~~~~~~~~~ +genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] + 149 | extern closeseq(); + | ^~~~~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ @@ -363,40 +406,6 @@ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ -genwin.c:62:1: warning: return type defaults to 'int' [-Wimplicit-int] - 62 | genwininit() - | ^~~~~~~~~~ -genwin.c: In function 'opendbase': -genwin.c:93:8: warning: implicit declaration of function 'blastdb' [-Wimplicit-function-declaration] - 93 | if (blastdb(name)) - | ^~~~~~~ -genwin.c: At top level: -genwin.c:144:8: warning: return type defaults to 'int' [-Wimplicit-int] - 144 | extern closedbase(dbase) - | ^~~~~~~~~~ -genwin.c:185:8: warning: return type defaults to 'int' [-Wimplicit-int] - 185 | extern closeseq(seq) - | ^~~~~~~~ -genwin.c:319:8: warning: return type defaults to 'int' [-Wimplicit-int] - 319 | extern closewin(win) - | ^~~~~~~~ -genwin.c:336:8: warning: return type defaults to 'int' [-Wimplicit-int] - 336 | extern compon(win) - | ^~~~~~ -genwin.c:364:8: warning: return type defaults to 'int' [-Wimplicit-int] - 364 | extern stateon(win) - | ^~~~~~~ -genwin.c:389:8: warning: return type defaults to 'int' [-Wimplicit-int] - 389 | extern enton(win) - | ^~~~~ -genwin.c: In function 'readentry': -In file included from seg.c:10: -genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] - 146 | extern closedbase(); - | ^~~~~~~~~~ -genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] - 149 | extern closeseq(); - | ^~~~~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ @@ -424,6 +433,33 @@ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~~~~ +genwin.c:62:1: warning: return type defaults to 'int' [-Wimplicit-int] + 62 | genwininit() + | ^~~~~~~~~~ +genwin.c: In function 'opendbase': +genwin.c:93:8: warning: implicit declaration of function 'blastdb' [-Wimplicit-function-declaration] + 93 | if (blastdb(name)) + | ^~~~~~~ +genwin.c: At top level: +genwin.c:144:8: warning: return type defaults to 'int' [-Wimplicit-int] + 144 | extern closedbase(dbase) + | ^~~~~~~~~~ +genwin.c:185:8: warning: return type defaults to 'int' [-Wimplicit-int] + 185 | extern closeseq(seq) + | ^~~~~~~~ +genwin.c:319:8: warning: return type defaults to 'int' [-Wimplicit-int] + 319 | extern closewin(win) + | ^~~~~~~~ +genwin.c:336:8: warning: return type defaults to 'int' [-Wimplicit-int] + 336 | extern compon(win) + | ^~~~~~ +genwin.c:364:8: warning: return type defaults to 'int' [-Wimplicit-int] + 364 | extern stateon(win) + | ^~~~~~~ +genwin.c:389:8: warning: return type defaults to 'int' [-Wimplicit-int] + 389 | extern enton(win) + | ^~~~~ +genwin.c: In function 'readentry': genwin.c:510:9: warning: implicit declaration of function 'readhdr' [-Wimplicit-function-declaration] 510 | if (!readhdr(seq)) | ^~~~~~~ @@ -591,7 +627,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/ncbi-seg/ - make -j3 install DESTDIR=/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg AM_UPDATE_INFO_DIR=no + make -j4 install DESTDIR=/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' make[2]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' /usr/bin/mkdir -p '/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/bin' @@ -622,8 +658,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'ncbi-seg-dbgsym' in '../ncbi-seg-dbgsym_0.0.20000620-7_armhf.deb'. dpkg-deb: building package 'ncbi-seg' in '../ncbi-seg_0.0.20000620-7_armhf.deb'. +dpkg-deb: building package 'ncbi-seg-dbgsym' in '../ncbi-seg-dbgsym_0.0.20000620-7_armhf.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-seg_0.0.20000620-7_armhf.buildinfo dpkg-genchanges --build=binary -O../ncbi-seg_0.0.20000620-7_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -631,12 +667,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6647/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6647/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/10696 and its subdirectories -I: Current time: Sun Oct 13 10:22:14 -12 2024 -I: pbuilder-time-stamp: 1728858134 +I: removing directory /srv/workspace/pbuilder/6647 and its subdirectories +I: Current time: Mon Oct 14 12:25:31 +14 2024 +I: pbuilder-time-stamp: 1728858331