Diff of the two buildlogs: -- --- b1/build.log 2024-04-24 19:07:23.304444097 +0000 +++ b2/build.log 2024-04-24 19:28:49.113610453 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 24 06:44:21 -12 2024 -I: pbuilder-time-stamp: 1713984261 +I: Current time: Thu Apr 25 09:08:24 +14 2024 +I: pbuilder-time-stamp: 1713985704 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying 968a0af8bc1a224337a3d1e1bd2fec3aec9e3fa1.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/19364/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/15198/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 24 19:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/15198/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/15198/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='bf713fd0f5ad48b49e33cee54aa0617e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='19364' - PS1='# ' - PS2='> ' + INVOCATION_ID=f5ab254c5bd542359340fd176ecbe765 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=15198 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WqQTNc9Y/pbuilderrc_WW3G --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WqQTNc9Y/b1 --logfile b1/build.log molmodel_3.1.0-4.1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WqQTNc9Y/pbuilderrc_Zpuu --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WqQTNc9Y/b2 --logfile b2/build.log molmodel_3.1.0-4.1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux wbq0 6.1.0-20-armmp #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 24 11:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/19364/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 23 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/15198/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -88,7 +120,7 @@ Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19467 files and directories currently installed.) +(Reading database ... 19637 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -121,11 +153,11 @@ pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: - autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgssapi-krb5-2{a} libice-dev{a} libice6{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm17{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libnghttp2-14{a} libopenblas-pthread-dev{a} libopenblas0-pthread{a} libopengl-dev{a} libopengl0{a} libopenmm-dev{a} libopenmm8.0t64{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsimbody-dev{a} libsimbody3.7{a} libsm-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libvulkan1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tao-pegtl-dev{a} x11-common{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} + autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu72{a} libjsoncpp25{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm17{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libnghttp2-14{a} libopenblas-pthread-dev{a} libopenblas0-pthread{a} libopengl-dev{a} libopengl0{a} libopenmm-dev{a} libopenmm8.0t64{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsimbody-dev{a} libsimbody3.7{a} libsm-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libvulkan1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tao-pegtl-dev{a} x11-common{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: - ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx mesa-vulkan-drivers psmisc publicsuffix wget -0 packages upgraded, 147 newly installed, 0 to remove and 0 not upgraded. -Need to get 88.7 MB of archives. After unpacking 357 MB will be used. + ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx mesa-vulkan-drivers psmisc publicsuffix wget +0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded. +Need to get 88.2 MB of archives. After unpacking 356 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-4 [864 kB] @@ -148,136 +180,130 @@ Get: 19 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive13 armhf 3.7.2-1 [301 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] -Get: 22 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-5+b1 [30.4 kB] -Get: 23 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.0-2+b1 [19.3 kB] -Get: 24 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-5+b1 [75.4 kB] -Get: 25 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] -Get: 26 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-5+b1 [289 kB] -Get: 27 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-5+b1 [112 kB] -Get: 28 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-4+b1 [18.2 kB] -Get: 29 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-4+b1 [50.1 kB] -Get: 30 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5+b3 [158 kB] -Get: 31 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.59.0-1 [62.0 kB] -Get: 32 http://deb.debian.org/debian trixie/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB] -Get: 33 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] -Get: 34 http://deb.debian.org/debian trixie/main armhf libssh2-1 armhf 1.11.0-4 [197 kB] -Get: 35 http://deb.debian.org/debian trixie/main armhf libcurl4 armhf 8.5.0-2 [383 kB] -Get: 36 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] -Get: 37 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] -Get: 38 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] -Get: 39 http://deb.debian.org/debian trixie/main armhf libuv1 armhf 1.48.0-1 [133 kB] -Get: 40 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.28.3-1 [2128 kB] -Get: 41 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.28.3-1 [5109 kB] -Get: 42 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] -Get: 43 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] -Get: 44 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] -Get: 45 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] -Get: 46 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] -Get: 47 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] -Get: 48 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] -Get: 49 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] -Get: 50 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] -Get: 51 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] -Get: 52 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] -Get: 53 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] -Get: 54 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] -Get: 55 http://deb.debian.org/debian trixie/main armhf libglvnd0 armhf 1.7.0-1 [52.3 kB] -Get: 56 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] -Get: 57 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] -Get: 58 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] -Get: 59 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.15-1 [140 kB] -Get: 60 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] -Get: 61 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] -Get: 62 http://deb.debian.org/debian trixie/main armhf libdrm-common all 2.4.120-2 [7688 B] -Get: 63 http://deb.debian.org/debian trixie/main armhf libdrm2 armhf 2.4.120-2 [33.8 kB] -Get: 64 http://deb.debian.org/debian trixie/main armhf libglapi-mesa armhf 23.3.5-1 [42.5 kB] -Get: 65 http://deb.debian.org/debian trixie/main armhf libx11-xcb1 armhf 2:1.8.7-1 [231 kB] -Get: 66 http://deb.debian.org/debian trixie/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB] -Get: 67 http://deb.debian.org/debian trixie/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB] -Get: 68 http://deb.debian.org/debian trixie/main armhf libxcb-glx0 armhf 1.15-1 [120 kB] -Get: 69 http://deb.debian.org/debian trixie/main armhf libxcb-present0 armhf 1.15-1 [105 kB] -Get: 70 http://deb.debian.org/debian trixie/main armhf libxcb-randr0 armhf 1.15-1 [116 kB] -Get: 71 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] -Get: 72 http://deb.debian.org/debian trixie/main armhf libxcb-sync1 armhf 1.15-1 [108 kB] -Get: 73 http://deb.debian.org/debian trixie/main armhf libxcb-xfixes0 armhf 1.15-1 [110 kB] -Get: 74 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] -Get: 75 http://deb.debian.org/debian trixie/main armhf libxfixes3 armhf 1:6.0.0-2 [21.1 kB] -Get: 76 http://deb.debian.org/debian trixie/main armhf libxshmfence1 armhf 1.3-1 [8592 B] -Get: 77 http://deb.debian.org/debian trixie/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] -Get: 78 http://deb.debian.org/debian trixie/main armhf libvulkan1 armhf 1.3.280.0-1 [108 kB] -Get: 79 http://deb.debian.org/debian trixie/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [20.0 kB] -Get: 80 http://deb.debian.org/debian trixie/main armhf libdrm-nouveau2 armhf 2.4.120-2 [16.9 kB] -Get: 81 http://deb.debian.org/debian trixie/main armhf libdrm-radeon1 armhf 2.4.120-2 [19.5 kB] -Get: 82 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20230828-1 [76.8 kB] -Get: 83 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] -Get: 84 http://deb.debian.org/debian trixie/main armhf libllvm17 armhf 1:17.0.6-5 [21.6 MB] -Get: 85 http://deb.debian.org/debian trixie/main armhf libsensors-config all 1:3.6.0-9 [14.6 kB] -Get: 86 http://deb.debian.org/debian trixie/main armhf libsensors5 armhf 1:3.6.0-9 [31.9 kB] -Get: 87 http://deb.debian.org/debian trixie/main armhf libgl1-mesa-dri armhf 23.3.5-1 [6405 kB] -Get: 88 http://deb.debian.org/debian trixie/main armhf libglx-mesa0 armhf 23.3.5-1 [130 kB] -Get: 89 http://deb.debian.org/debian trixie/main armhf libglx0 armhf 1.7.0-1 [32.2 kB] -Get: 90 http://deb.debian.org/debian trixie/main armhf libgl1 armhf 1.7.0-1 [90.8 kB] -Get: 91 http://deb.debian.org/debian trixie/main armhf libxi6 armhf 2:1.8.1-1 [73.8 kB] -Get: 92 http://deb.debian.org/debian trixie/main armhf libglut3.12 armhf 3.4.0-1+b1 [125 kB] -Get: 93 http://deb.debian.org/debian trixie/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] -Get: 94 http://deb.debian.org/debian trixie/main armhf x11proto-dev all 2024.1-1 [603 kB] -Get: 95 http://deb.debian.org/debian trixie/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] -Get: 96 http://deb.debian.org/debian trixie/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] -Get: 97 http://deb.debian.org/debian trixie/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] -Get: 98 http://deb.debian.org/debian trixie/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] -Get: 99 http://deb.debian.org/debian trixie/main armhf libxcb1-dev armhf 1.15-1 [179 kB] -Get: 100 http://deb.debian.org/debian trixie/main armhf libx11-dev armhf 2:1.8.7-1 [816 kB] -Get: 101 http://deb.debian.org/debian trixie/main armhf libglx-dev armhf 1.7.0-1 [15.5 kB] -Get: 102 http://deb.debian.org/debian trixie/main armhf libgl-dev armhf 1.7.0-1 [100 kB] -Get: 103 http://deb.debian.org/debian trixie/main armhf libglvnd-core-dev armhf 1.7.0-1 [13.1 kB] -Get: 104 http://deb.debian.org/debian trixie/main armhf libwayland-server0 armhf 1.22.0-2.1+b1 [26.7 kB] -Get: 105 http://deb.debian.org/debian trixie/main armhf libgbm1 armhf 23.3.5-1 [36.6 kB] -Get: 106 http://deb.debian.org/debian trixie/main armhf libwayland-client0 armhf 1.22.0-2.1+b1 [20.4 kB] -Get: 107 http://deb.debian.org/debian trixie/main armhf libegl-mesa0 armhf 23.3.5-1 [98.1 kB] -Get: 108 http://deb.debian.org/debian trixie/main armhf libegl1 armhf 1.7.0-1 [28.7 kB] -Get: 109 http://deb.debian.org/debian trixie/main armhf libegl-dev armhf 1.7.0-1 [19.2 kB] -Get: 110 http://deb.debian.org/debian trixie/main armhf libgles1 armhf 1.7.0-1 [12.0 kB] -Get: 111 http://deb.debian.org/debian trixie/main armhf libgles2 armhf 1.7.0-1 [17.4 kB] -Get: 112 http://deb.debian.org/debian trixie/main armhf libgles-dev armhf 1.7.0-1 [50.5 kB] -Get: 113 http://deb.debian.org/debian trixie/main armhf libopengl0 armhf 1.7.0-1 [31.9 kB] -Get: 114 http://deb.debian.org/debian trixie/main armhf libopengl-dev armhf 1.7.0-1 [5104 B] -Get: 115 http://deb.debian.org/debian trixie/main armhf libglvnd-dev armhf 1.7.0-1 [4868 B] -Get: 116 http://deb.debian.org/debian trixie/main armhf libgl1-mesa-dev armhf 23.3.5-1 [16.5 kB] -Get: 117 http://deb.debian.org/debian trixie/main armhf libglu1-mesa armhf 9.0.2-1.1 [137 kB] -Get: 118 http://deb.debian.org/debian trixie/main armhf libglu1-mesa-dev armhf 9.0.2-1.1 [177 kB] -Get: 119 http://deb.debian.org/debian trixie/main armhf libxext-dev armhf 2:1.3.4-1+b1 [103 kB] -Get: 120 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23 [252 kB] -Get: 121 http://deb.debian.org/debian trixie/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] -Get: 122 http://deb.debian.org/debian trixie/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] -Get: 123 http://deb.debian.org/debian trixie/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] -Get: 124 http://deb.debian.org/debian trixie/main armhf libice-dev armhf 2:1.0.10-1 [61.9 kB] -Get: 125 http://deb.debian.org/debian trixie/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] -Get: 126 http://deb.debian.org/debian trixie/main armhf libxt-dev armhf 1:1.2.1-1.1 [384 kB] -Get: 127 http://deb.debian.org/debian trixie/main armhf libglut-dev armhf 3.4.0-1+b1 [153 kB] -Get: 128 http://deb.debian.org/debian trixie/main armhf freeglut3-dev armhf 3.4.0-1+b1 [53.4 kB] -Get: 129 http://deb.debian.org/debian trixie/main armhf gemmi-dev armhf 0.6.4+ds-1 [1071 kB] -Get: 130 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] -Get: 131 http://deb.debian.org/debian trixie/main armhf libopenblas0-pthread armhf 0.3.26+ds-1 [2404 kB] -Get: 132 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] -Get: 133 http://deb.debian.org/debian trixie/main armhf libopenblas-pthread-dev armhf 0.3.26+ds-1 [2241 kB] -Get: 134 http://deb.debian.org/debian trixie/main armhf liblapack-dev armhf 3.12.0-3 [1903 kB] -Get: 135 http://deb.debian.org/debian trixie/main armhf libmmdb2-0 armhf 2.0.22-1+b1 [280 kB] -Get: 136 http://deb.debian.org/debian trixie/main armhf libmmdb2-dev armhf 2.0.22-1+b1 [92.9 kB] -Get: 137 http://deb.debian.org/debian trixie/main armhf libopenmm8.0t64 armhf 8.0.0+dfsg-6.1 [857 kB] -Get: 138 http://deb.debian.org/debian trixie/main armhf libopenmm-dev armhf 8.0.0+dfsg-6.1 [320 kB] -Get: 139 http://deb.debian.org/debian trixie/main armhf libxfixes-dev armhf 1:6.0.0-2 [23.3 kB] -Get: 140 http://deb.debian.org/debian trixie/main armhf libxi-dev armhf 2:1.8.1-1 [235 kB] -Get: 141 http://deb.debian.org/debian trixie/main armhf libxmu6 armhf 2:1.1.3-3 [52.6 kB] -Get: 142 http://deb.debian.org/debian trixie/main armhf libxmu-headers all 2:1.1.3-3 [68.5 kB] -Get: 143 http://deb.debian.org/debian trixie/main armhf libxmu-dev armhf 2:1.1.3-3 [59.1 kB] -Get: 144 http://deb.debian.org/debian trixie/main armhf libsimbody3.7 armhf 3.7+dfsg-3 [2674 kB] -Get: 145 http://deb.debian.org/debian trixie/main armhf libsimbody-dev armhf 3.7+dfsg-3 [2727 kB] -Get: 146 http://deb.debian.org/debian trixie/main armhf tao-pegtl-dev all 3.2.7-1 [69.4 kB] -Get: 147 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] -Fetched 88.7 MB in 9s (10.2 MB/s) +Get: 22 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-4+b1 [18.2 kB] +Get: 23 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-4+b1 [50.1 kB] +Get: 24 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5+b3 [158 kB] +Get: 25 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.59.0-1 [62.0 kB] +Get: 26 http://deb.debian.org/debian trixie/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB] +Get: 27 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] +Get: 28 http://deb.debian.org/debian trixie/main armhf libssh2-1 armhf 1.11.0-4 [197 kB] +Get: 29 http://deb.debian.org/debian trixie/main armhf libcurl4 armhf 8.5.0-2 [383 kB] +Get: 30 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] +Get: 31 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] +Get: 32 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] +Get: 33 http://deb.debian.org/debian trixie/main armhf libuv1 armhf 1.48.0-1 [133 kB] +Get: 34 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.28.3-1 [2128 kB] +Get: 35 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.28.3-1 [5109 kB] +Get: 36 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] +Get: 37 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] +Get: 38 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] +Get: 39 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] +Get: 40 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] +Get: 41 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] +Get: 42 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] +Get: 43 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] +Get: 44 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] +Get: 45 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] +Get: 46 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] +Get: 47 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] +Get: 48 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] +Get: 49 http://deb.debian.org/debian trixie/main armhf libglvnd0 armhf 1.7.0-1 [52.3 kB] +Get: 50 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] +Get: 51 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] +Get: 52 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] +Get: 53 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.15-1 [140 kB] +Get: 54 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] +Get: 55 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] +Get: 56 http://deb.debian.org/debian trixie/main armhf libdrm-common all 2.4.120-2 [7688 B] +Get: 57 http://deb.debian.org/debian trixie/main armhf libdrm2 armhf 2.4.120-2 [33.8 kB] +Get: 58 http://deb.debian.org/debian trixie/main armhf libglapi-mesa armhf 23.3.5-1 [42.5 kB] +Get: 59 http://deb.debian.org/debian trixie/main armhf libx11-xcb1 armhf 2:1.8.7-1 [231 kB] +Get: 60 http://deb.debian.org/debian trixie/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB] +Get: 61 http://deb.debian.org/debian trixie/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB] +Get: 62 http://deb.debian.org/debian trixie/main armhf libxcb-glx0 armhf 1.15-1 [120 kB] +Get: 63 http://deb.debian.org/debian trixie/main armhf libxcb-present0 armhf 1.15-1 [105 kB] +Get: 64 http://deb.debian.org/debian trixie/main armhf libxcb-randr0 armhf 1.15-1 [116 kB] +Get: 65 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] +Get: 66 http://deb.debian.org/debian trixie/main armhf libxcb-sync1 armhf 1.15-1 [108 kB] +Get: 67 http://deb.debian.org/debian trixie/main armhf libxcb-xfixes0 armhf 1.15-1 [110 kB] +Get: 68 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] +Get: 69 http://deb.debian.org/debian trixie/main armhf libxfixes3 armhf 1:6.0.0-2 [21.1 kB] +Get: 70 http://deb.debian.org/debian trixie/main armhf libxshmfence1 armhf 1.3-1 [8592 B] +Get: 71 http://deb.debian.org/debian trixie/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] +Get: 72 http://deb.debian.org/debian trixie/main armhf libvulkan1 armhf 1.3.280.0-1 [108 kB] +Get: 73 http://deb.debian.org/debian trixie/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [20.0 kB] +Get: 74 http://deb.debian.org/debian trixie/main armhf libdrm-nouveau2 armhf 2.4.120-2 [16.9 kB] +Get: 75 http://deb.debian.org/debian trixie/main armhf libdrm-radeon1 armhf 2.4.120-2 [19.5 kB] +Get: 76 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20230828-1 [76.8 kB] +Get: 77 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] +Get: 78 http://deb.debian.org/debian trixie/main armhf libllvm17 armhf 1:17.0.6-5 [21.6 MB] +Get: 79 http://deb.debian.org/debian trixie/main armhf libsensors-config all 1:3.6.0-9 [14.6 kB] +Get: 80 http://deb.debian.org/debian trixie/main armhf libsensors5 armhf 1:3.6.0-9 [31.9 kB] +Get: 81 http://deb.debian.org/debian trixie/main armhf libgl1-mesa-dri armhf 23.3.5-1 [6405 kB] +Get: 82 http://deb.debian.org/debian trixie/main armhf libglx-mesa0 armhf 23.3.5-1 [130 kB] +Get: 83 http://deb.debian.org/debian trixie/main armhf libglx0 armhf 1.7.0-1 [32.2 kB] +Get: 84 http://deb.debian.org/debian trixie/main armhf libgl1 armhf 1.7.0-1 [90.8 kB] +Get: 85 http://deb.debian.org/debian trixie/main armhf libxi6 armhf 2:1.8.1-1 [73.8 kB] +Get: 86 http://deb.debian.org/debian trixie/main armhf libglut3.12 armhf 3.4.0-1+b1 [125 kB] +Get: 87 http://deb.debian.org/debian trixie/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] +Get: 88 http://deb.debian.org/debian trixie/main armhf x11proto-dev all 2024.1-1 [603 kB] +Get: 89 http://deb.debian.org/debian trixie/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] +Get: 90 http://deb.debian.org/debian trixie/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] +Get: 91 http://deb.debian.org/debian trixie/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] +Get: 92 http://deb.debian.org/debian trixie/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] +Get: 93 http://deb.debian.org/debian trixie/main armhf libxcb1-dev armhf 1.15-1 [179 kB] +Get: 94 http://deb.debian.org/debian trixie/main armhf libx11-dev armhf 2:1.8.7-1 [816 kB] +Get: 95 http://deb.debian.org/debian trixie/main armhf libglx-dev armhf 1.7.0-1 [15.5 kB] +Get: 96 http://deb.debian.org/debian trixie/main armhf libgl-dev armhf 1.7.0-1 [100 kB] +Get: 97 http://deb.debian.org/debian trixie/main armhf libglvnd-core-dev armhf 1.7.0-1 [13.1 kB] +Get: 98 http://deb.debian.org/debian trixie/main armhf libwayland-server0 armhf 1.22.0-2.1+b1 [26.7 kB] +Get: 99 http://deb.debian.org/debian trixie/main armhf libgbm1 armhf 23.3.5-1 [36.6 kB] +Get: 100 http://deb.debian.org/debian trixie/main armhf libwayland-client0 armhf 1.22.0-2.1+b1 [20.4 kB] +Get: 101 http://deb.debian.org/debian trixie/main armhf libegl-mesa0 armhf 23.3.5-1 [98.1 kB] +Get: 102 http://deb.debian.org/debian trixie/main armhf libegl1 armhf 1.7.0-1 [28.7 kB] +Get: 103 http://deb.debian.org/debian trixie/main armhf libegl-dev armhf 1.7.0-1 [19.2 kB] +Get: 104 http://deb.debian.org/debian trixie/main armhf libgles1 armhf 1.7.0-1 [12.0 kB] +Get: 105 http://deb.debian.org/debian trixie/main armhf libgles2 armhf 1.7.0-1 [17.4 kB] +Get: 106 http://deb.debian.org/debian trixie/main armhf libgles-dev armhf 1.7.0-1 [50.5 kB] +Get: 107 http://deb.debian.org/debian trixie/main armhf libopengl0 armhf 1.7.0-1 [31.9 kB] +Get: 108 http://deb.debian.org/debian trixie/main armhf libopengl-dev armhf 1.7.0-1 [5104 B] +Get: 109 http://deb.debian.org/debian trixie/main armhf libglvnd-dev armhf 1.7.0-1 [4868 B] +Get: 110 http://deb.debian.org/debian trixie/main armhf libgl1-mesa-dev armhf 23.3.5-1 [16.5 kB] +Get: 111 http://deb.debian.org/debian trixie/main armhf libglu1-mesa armhf 9.0.2-1.1 [137 kB] +Get: 112 http://deb.debian.org/debian trixie/main armhf libglu1-mesa-dev armhf 9.0.2-1.1 [177 kB] +Get: 113 http://deb.debian.org/debian trixie/main armhf libxext-dev armhf 2:1.3.4-1+b1 [103 kB] +Get: 114 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23 [252 kB] +Get: 115 http://deb.debian.org/debian trixie/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] +Get: 116 http://deb.debian.org/debian trixie/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] +Get: 117 http://deb.debian.org/debian trixie/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] +Get: 118 http://deb.debian.org/debian trixie/main armhf libice-dev armhf 2:1.0.10-1 [61.9 kB] +Get: 119 http://deb.debian.org/debian trixie/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] +Get: 120 http://deb.debian.org/debian trixie/main armhf libxt-dev armhf 1:1.2.1-1.1 [384 kB] +Get: 121 http://deb.debian.org/debian trixie/main armhf libglut-dev armhf 3.4.0-1+b1 [153 kB] +Get: 122 http://deb.debian.org/debian trixie/main armhf freeglut3-dev armhf 3.4.0-1+b1 [53.4 kB] +Get: 123 http://deb.debian.org/debian trixie/main armhf gemmi-dev armhf 0.6.4+ds-1 [1071 kB] +Get: 124 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] +Get: 125 http://deb.debian.org/debian trixie/main armhf libopenblas0-pthread armhf 0.3.26+ds-1 [2404 kB] +Get: 126 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] +Get: 127 http://deb.debian.org/debian trixie/main armhf libopenblas-pthread-dev armhf 0.3.26+ds-1 [2241 kB] +Get: 128 http://deb.debian.org/debian trixie/main armhf liblapack-dev armhf 3.12.0-3 [1903 kB] +Get: 129 http://deb.debian.org/debian trixie/main armhf libmmdb2-0 armhf 2.0.22-1+b1 [280 kB] +Get: 130 http://deb.debian.org/debian trixie/main armhf libmmdb2-dev armhf 2.0.22-1+b1 [92.9 kB] +Get: 131 http://deb.debian.org/debian trixie/main armhf libopenmm8.0t64 armhf 8.0.0+dfsg-6.1 [857 kB] +Get: 132 http://deb.debian.org/debian trixie/main armhf libopenmm-dev armhf 8.0.0+dfsg-6.1 [320 kB] +Get: 133 http://deb.debian.org/debian trixie/main armhf libxfixes-dev armhf 1:6.0.0-2 [23.3 kB] +Get: 134 http://deb.debian.org/debian trixie/main armhf libxi-dev armhf 2:1.8.1-1 [235 kB] +Get: 135 http://deb.debian.org/debian trixie/main armhf libxmu6 armhf 2:1.1.3-3 [52.6 kB] +Get: 136 http://deb.debian.org/debian trixie/main armhf libxmu-headers all 2:1.1.3-3 [68.5 kB] +Get: 137 http://deb.debian.org/debian trixie/main armhf libxmu-dev armhf 2:1.1.3-3 [59.1 kB] +Get: 138 http://deb.debian.org/debian trixie/main armhf libsimbody3.7 armhf 3.7+dfsg-3 [2674 kB] +Get: 139 http://deb.debian.org/debian trixie/main armhf libsimbody-dev armhf 3.7+dfsg-3 [2727 kB] +Get: 140 http://deb.debian.org/debian trixie/main armhf tao-pegtl-dev all 3.2.7-1 [69.4 kB] +Get: 141 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] +Fetched 88.2 MB in 7s (13.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19467 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19637 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-4_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-4) ... Selecting previously unselected package procps. @@ -340,389 +366,370 @@ Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../020-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... -Selecting previously unselected package libkrb5support0:armhf. -Preparing to unpack .../021-libkrb5support0_1.20.1-5+b1_armhf.deb ... -Unpacking libkrb5support0:armhf (1.20.1-5+b1) ... -Selecting previously unselected package libcom-err2:armhf. -Preparing to unpack .../022-libcom-err2_1.47.0-2+b1_armhf.deb ... -Unpacking libcom-err2:armhf (1.47.0-2+b1) ... -Selecting previously unselected package libk5crypto3:armhf. -Preparing to unpack .../023-libk5crypto3_1.20.1-5+b1_armhf.deb ... -Unpacking libk5crypto3:armhf (1.20.1-5+b1) ... -Selecting previously unselected package libkeyutils1:armhf. -Preparing to unpack .../024-libkeyutils1_1.6.3-3_armhf.deb ... -Unpacking libkeyutils1:armhf (1.6.3-3) ... -Selecting previously unselected package libkrb5-3:armhf. -Preparing to unpack .../025-libkrb5-3_1.20.1-5+b1_armhf.deb ... -Unpacking libkrb5-3:armhf (1.20.1-5+b1) ... -Selecting previously unselected package libgssapi-krb5-2:armhf. -Preparing to unpack .../026-libgssapi-krb5-2_1.20.1-5+b1_armhf.deb ... -Unpacking libgssapi-krb5-2:armhf (1.20.1-5+b1) ... Selecting previously unselected package libsasl2-modules-db:armhf. -Preparing to unpack .../027-libsasl2-modules-db_2.1.28+dfsg1-4+b1_armhf.deb ... +Preparing to unpack .../021-libsasl2-modules-db_2.1.28+dfsg1-4+b1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:armhf. -Preparing to unpack .../028-libsasl2-2_2.1.28+dfsg1-4+b1_armhf.deb ... +Preparing to unpack .../022-libsasl2-2_2.1.28+dfsg1-4+b1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:armhf. -Preparing to unpack .../029-libldap-2.5-0_2.5.13+dfsg-5+b3_armhf.deb ... +Preparing to unpack .../023-libldap-2.5-0_2.5.13+dfsg-5+b3_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:armhf. -Preparing to unpack .../030-libnghttp2-14_1.59.0-1_armhf.deb ... +Preparing to unpack .../024-libnghttp2-14_1.59.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.59.0-1) ... Selecting previously unselected package libpsl5:armhf. -Preparing to unpack .../031-libpsl5_0.21.2-1+b1_armhf.deb ... +Preparing to unpack .../025-libpsl5_0.21.2-1+b1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1+b1) ... Selecting previously unselected package librtmp1:armhf. -Preparing to unpack .../032-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... +Preparing to unpack .../026-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. -Preparing to unpack .../033-libssh2-1_1.11.0-4_armhf.deb ... +Preparing to unpack .../027-libssh2-1_1.11.0-4_armhf.deb ... Unpacking libssh2-1:armhf (1.11.0-4) ... Selecting previously unselected package libcurl4:armhf. -Preparing to unpack .../034-libcurl4_8.5.0-2_armhf.deb ... +Preparing to unpack .../028-libcurl4_8.5.0-2_armhf.deb ... Unpacking libcurl4:armhf (8.5.0-2) ... Selecting previously unselected package libexpat1:armhf. -Preparing to unpack .../035-libexpat1_2.6.2-1_armhf.deb ... +Preparing to unpack .../029-libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package libjsoncpp25:armhf. -Preparing to unpack .../036-libjsoncpp25_1.9.5-6+b2_armhf.deb ... +Preparing to unpack .../030-libjsoncpp25_1.9.5-6+b2_armhf.deb ... Unpacking libjsoncpp25:armhf (1.9.5-6+b2) ... Selecting previously unselected package librhash0:armhf. -Preparing to unpack .../037-librhash0_1.4.3-3+b1_armhf.deb ... +Preparing to unpack .../031-librhash0_1.4.3-3+b1_armhf.deb ... Unpacking librhash0:armhf (1.4.3-3+b1) ... Selecting previously unselected package libuv1:armhf. -Preparing to unpack .../038-libuv1_1.48.0-1_armhf.deb ... +Preparing to unpack .../032-libuv1_1.48.0-1_armhf.deb ... Unpacking libuv1:armhf (1.48.0-1) ... Selecting previously unselected package cmake-data. -Preparing to unpack .../039-cmake-data_3.28.3-1_all.deb ... +Preparing to unpack .../033-cmake-data_3.28.3-1_all.deb ... Unpacking cmake-data (3.28.3-1) ... Selecting previously unselected package cmake. -Preparing to unpack .../040-cmake_3.28.3-1_armhf.deb ... +Preparing to unpack .../034-cmake_3.28.3-1_armhf.deb ... Unpacking cmake (3.28.3-1) ... Selecting previously unselected package libdebhelper-perl. -Preparing to unpack .../041-libdebhelper-perl_13.15.3_all.deb ... +Preparing to unpack .../035-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. -Preparing to unpack .../042-libtool_2.4.7-7_all.deb ... +Preparing to unpack .../036-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. -Preparing to unpack .../043-dh-autoreconf_20_all.deb ... +Preparing to unpack .../037-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. -Preparing to unpack .../044-libarchive-zip-perl_1.68-1_all.deb ... +Preparing to unpack .../038-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. -Preparing to unpack .../045-libsub-override-perl_0.10-1_all.deb ... +Preparing to unpack .../039-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. -Preparing to unpack .../046-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... +Preparing to unpack .../040-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. -Preparing to unpack .../047-dh-strip-nondeterminism_1.13.1-1_all.deb ... +Preparing to unpack .../041-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. -Preparing to unpack .../048-libelf1_0.190-1+b1_armhf.deb ... +Preparing to unpack .../042-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. -Preparing to unpack .../049-dwz_0.15-1_armhf.deb ... +Preparing to unpack .../043-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. -Preparing to unpack .../050-gettext_0.21-14+b1_armhf.deb ... +Preparing to unpack .../044-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. -Preparing to unpack .../051-intltool-debian_0.35.0+20060710.6_all.deb ... +Preparing to unpack .../045-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. -Preparing to unpack .../052-po-debconf_1.0.21+nmu1_all.deb ... +Preparing to unpack .../046-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. -Preparing to unpack .../053-debhelper_13.15.3_all.deb ... +Preparing to unpack .../047-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libglvnd0:armhf. -Preparing to unpack .../054-libglvnd0_1.7.0-1_armhf.deb ... +Preparing to unpack .../048-libglvnd0_1.7.0-1_armhf.deb ... Unpacking libglvnd0:armhf (1.7.0-1) ... Selecting previously unselected package libxau6:armhf. -Preparing to unpack .../055-libxau6_1%3a1.0.9-1_armhf.deb ... +Preparing to unpack .../049-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. -Preparing to unpack .../056-libbsd0_0.12.2-1_armhf.deb ... +Preparing to unpack .../050-libbsd0_0.12.2-1_armhf.deb ... Unpacking libbsd0:armhf (0.12.2-1) ... Selecting previously unselected package libxdmcp6:armhf. -Preparing to unpack .../057-libxdmcp6_1%3a1.1.2-3_armhf.deb ... +Preparing to unpack .../051-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. -Preparing to unpack .../058-libxcb1_1.15-1_armhf.deb ... +Preparing to unpack .../052-libxcb1_1.15-1_armhf.deb ... Unpacking libxcb1:armhf (1.15-1) ... Selecting previously unselected package libx11-data. -Preparing to unpack .../059-libx11-data_2%3a1.8.7-1_all.deb ... +Preparing to unpack .../053-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:armhf. -Preparing to unpack .../060-libx11-6_2%3a1.8.7-1_armhf.deb ... +Preparing to unpack .../054-libx11-6_2%3a1.8.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.8.7-1) ... Selecting previously unselected package libdrm-common. -Preparing to unpack .../061-libdrm-common_2.4.120-2_all.deb ... +Preparing to unpack .../055-libdrm-common_2.4.120-2_all.deb ... Unpacking libdrm-common (2.4.120-2) ... Selecting previously unselected package libdrm2:armhf. -Preparing to unpack .../062-libdrm2_2.4.120-2_armhf.deb ... +Preparing to unpack .../056-libdrm2_2.4.120-2_armhf.deb ... Unpacking libdrm2:armhf (2.4.120-2) ... Selecting previously unselected package libglapi-mesa:armhf. -Preparing to unpack .../063-libglapi-mesa_23.3.5-1_armhf.deb ... +Preparing to unpack .../057-libglapi-mesa_23.3.5-1_armhf.deb ... Unpacking libglapi-mesa:armhf (23.3.5-1) ... Selecting previously unselected package libx11-xcb1:armhf. -Preparing to unpack .../064-libx11-xcb1_2%3a1.8.7-1_armhf.deb ... +Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_armhf.deb ... Unpacking libx11-xcb1:armhf (2:1.8.7-1) ... Selecting previously unselected package libxcb-dri2-0:armhf. -Preparing to unpack .../065-libxcb-dri2-0_1.15-1_armhf.deb ... +Preparing to unpack .../059-libxcb-dri2-0_1.15-1_armhf.deb ... Unpacking libxcb-dri2-0:armhf (1.15-1) ... Selecting previously unselected package libxcb-dri3-0:armhf. -Preparing to unpack .../066-libxcb-dri3-0_1.15-1_armhf.deb ... +Preparing to unpack .../060-libxcb-dri3-0_1.15-1_armhf.deb ... Unpacking libxcb-dri3-0:armhf (1.15-1) ... Selecting previously unselected package libxcb-glx0:armhf. -Preparing to unpack .../067-libxcb-glx0_1.15-1_armhf.deb ... +Preparing to unpack .../061-libxcb-glx0_1.15-1_armhf.deb ... Unpacking libxcb-glx0:armhf (1.15-1) ... Selecting previously unselected package libxcb-present0:armhf. -Preparing to unpack .../068-libxcb-present0_1.15-1_armhf.deb ... +Preparing to unpack .../062-libxcb-present0_1.15-1_armhf.deb ... Unpacking libxcb-present0:armhf (1.15-1) ... Selecting previously unselected package libxcb-randr0:armhf. -Preparing to unpack .../069-libxcb-randr0_1.15-1_armhf.deb ... +Preparing to unpack .../063-libxcb-randr0_1.15-1_armhf.deb ... Unpacking libxcb-randr0:armhf (1.15-1) ... Selecting previously unselected package libxcb-shm0:armhf. -Preparing to unpack .../070-libxcb-shm0_1.15-1_armhf.deb ... +Preparing to unpack .../064-libxcb-shm0_1.15-1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.15-1) ... Selecting previously unselected package libxcb-sync1:armhf. -Preparing to unpack .../071-libxcb-sync1_1.15-1_armhf.deb ... +Preparing to unpack .../065-libxcb-sync1_1.15-1_armhf.deb ... Unpacking libxcb-sync1:armhf (1.15-1) ... Selecting previously unselected package libxcb-xfixes0:armhf. -Preparing to unpack .../072-libxcb-xfixes0_1.15-1_armhf.deb ... +Preparing to unpack .../066-libxcb-xfixes0_1.15-1_armhf.deb ... Unpacking libxcb-xfixes0:armhf (1.15-1) ... Selecting previously unselected package libxext6:armhf. -Preparing to unpack .../073-libxext6_2%3a1.3.4-1+b1_armhf.deb ... +Preparing to unpack .../067-libxext6_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package libxfixes3:armhf. -Preparing to unpack .../074-libxfixes3_1%3a6.0.0-2_armhf.deb ... +Preparing to unpack .../068-libxfixes3_1%3a6.0.0-2_armhf.deb ... Unpacking libxfixes3:armhf (1:6.0.0-2) ... Selecting previously unselected package libxshmfence1:armhf. -Preparing to unpack .../075-libxshmfence1_1.3-1_armhf.deb ... +Preparing to unpack .../069-libxshmfence1_1.3-1_armhf.deb ... Unpacking libxshmfence1:armhf (1.3-1) ... Selecting previously unselected package libxxf86vm1:armhf. -Preparing to unpack .../076-libxxf86vm1_1%3a1.1.4-1+b2_armhf.deb ... +Preparing to unpack .../070-libxxf86vm1_1%3a1.1.4-1+b2_armhf.deb ... Unpacking libxxf86vm1:armhf (1:1.1.4-1+b2) ... Selecting previously unselected package libvulkan1:armhf. -Preparing to unpack .../077-libvulkan1_1.3.280.0-1_armhf.deb ... +Preparing to unpack .../071-libvulkan1_1.3.280.0-1_armhf.deb ... Unpacking libvulkan1:armhf (1.3.280.0-1) ... Selecting previously unselected package libdrm-amdgpu1:armhf. -Preparing to unpack .../078-libdrm-amdgpu1_2.4.120-2_armhf.deb ... +Preparing to unpack .../072-libdrm-amdgpu1_2.4.120-2_armhf.deb ... Unpacking libdrm-amdgpu1:armhf (2.4.120-2) ... Selecting previously unselected package libdrm-nouveau2:armhf. -Preparing to unpack .../079-libdrm-nouveau2_2.4.120-2_armhf.deb ... +Preparing to unpack .../073-libdrm-nouveau2_2.4.120-2_armhf.deb ... Unpacking libdrm-nouveau2:armhf (2.4.120-2) ... Selecting previously unselected package libdrm-radeon1:armhf. -Preparing to unpack .../080-libdrm-radeon1_2.4.120-2_armhf.deb ... +Preparing to unpack .../074-libdrm-radeon1_2.4.120-2_armhf.deb ... Unpacking libdrm-radeon1:armhf (2.4.120-2) ... Selecting previously unselected package libedit2:armhf. -Preparing to unpack .../081-libedit2_3.1-20230828-1_armhf.deb ... +Preparing to unpack .../075-libedit2_3.1-20230828-1_armhf.deb ... Unpacking libedit2:armhf (3.1-20230828-1) ... Selecting previously unselected package libz3-4:armhf. -Preparing to unpack .../082-libz3-4_4.8.12-3.1+b2_armhf.deb ... +Preparing to unpack .../076-libz3-4_4.8.12-3.1+b2_armhf.deb ... Unpacking libz3-4:armhf (4.8.12-3.1+b2) ... Selecting previously unselected package libllvm17:armhf. -Preparing to unpack .../083-libllvm17_1%3a17.0.6-5_armhf.deb ... +Preparing to unpack .../077-libllvm17_1%3a17.0.6-5_armhf.deb ... Unpacking libllvm17:armhf (1:17.0.6-5) ... Selecting previously unselected package libsensors-config. -Preparing to unpack .../084-libsensors-config_1%3a3.6.0-9_all.deb ... +Preparing to unpack .../078-libsensors-config_1%3a3.6.0-9_all.deb ... Unpacking libsensors-config (1:3.6.0-9) ... Selecting previously unselected package libsensors5:armhf. -Preparing to unpack .../085-libsensors5_1%3a3.6.0-9_armhf.deb ... +Preparing to unpack .../079-libsensors5_1%3a3.6.0-9_armhf.deb ... Unpacking libsensors5:armhf (1:3.6.0-9) ... Selecting previously unselected package libgl1-mesa-dri:armhf. -Preparing to unpack .../086-libgl1-mesa-dri_23.3.5-1_armhf.deb ... +Preparing to unpack .../080-libgl1-mesa-dri_23.3.5-1_armhf.deb ... Unpacking libgl1-mesa-dri:armhf (23.3.5-1) ... Selecting previously unselected package libglx-mesa0:armhf. -Preparing to unpack .../087-libglx-mesa0_23.3.5-1_armhf.deb ... +Preparing to unpack .../081-libglx-mesa0_23.3.5-1_armhf.deb ... Unpacking libglx-mesa0:armhf (23.3.5-1) ... Selecting previously unselected package libglx0:armhf. -Preparing to unpack .../088-libglx0_1.7.0-1_armhf.deb ... +Preparing to unpack .../082-libglx0_1.7.0-1_armhf.deb ... Unpacking libglx0:armhf (1.7.0-1) ... Selecting previously unselected package libgl1:armhf. -Preparing to unpack .../089-libgl1_1.7.0-1_armhf.deb ... +Preparing to unpack .../083-libgl1_1.7.0-1_armhf.deb ... Unpacking libgl1:armhf (1.7.0-1) ... Selecting previously unselected package libxi6:armhf. -Preparing to unpack .../090-libxi6_2%3a1.8.1-1_armhf.deb ... +Preparing to unpack .../084-libxi6_2%3a1.8.1-1_armhf.deb ... Unpacking libxi6:armhf (2:1.8.1-1) ... Selecting previously unselected package libglut3.12:armhf. -Preparing to unpack .../091-libglut3.12_3.4.0-1+b1_armhf.deb ... +Preparing to unpack .../085-libglut3.12_3.4.0-1+b1_armhf.deb ... Unpacking libglut3.12:armhf (3.4.0-1+b1) ... Selecting previously unselected package xorg-sgml-doctools. -Preparing to unpack .../092-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... +Preparing to unpack .../086-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1.1) ... Selecting previously unselected package x11proto-dev. -Preparing to unpack .../093-x11proto-dev_2024.1-1_all.deb ... +Preparing to unpack .../087-x11proto-dev_2024.1-1_all.deb ... Unpacking x11proto-dev (2024.1-1) ... Selecting previously unselected package libxau-dev:armhf. -Preparing to unpack .../094-libxau-dev_1%3a1.0.9-1_armhf.deb ... +Preparing to unpack .../088-libxau-dev_1%3a1.0.9-1_armhf.deb ... Unpacking libxau-dev:armhf (1:1.0.9-1) ... Selecting previously unselected package libxdmcp-dev:armhf. -Preparing to unpack .../095-libxdmcp-dev_1%3a1.1.2-3_armhf.deb ... +Preparing to unpack .../089-libxdmcp-dev_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp-dev:armhf (1:1.1.2-3) ... Selecting previously unselected package xtrans-dev. -Preparing to unpack .../096-xtrans-dev_1.4.0-1_all.deb ... +Preparing to unpack .../090-xtrans-dev_1.4.0-1_all.deb ... Unpacking xtrans-dev (1.4.0-1) ... Selecting previously unselected package libpthread-stubs0-dev:armhf. -Preparing to unpack .../097-libpthread-stubs0-dev_0.4-1_armhf.deb ... +Preparing to unpack .../091-libpthread-stubs0-dev_0.4-1_armhf.deb ... Unpacking libpthread-stubs0-dev:armhf (0.4-1) ... Selecting previously unselected package libxcb1-dev:armhf. -Preparing to unpack .../098-libxcb1-dev_1.15-1_armhf.deb ... +Preparing to unpack .../092-libxcb1-dev_1.15-1_armhf.deb ... Unpacking libxcb1-dev:armhf (1.15-1) ... Selecting previously unselected package libx11-dev:armhf. -Preparing to unpack .../099-libx11-dev_2%3a1.8.7-1_armhf.deb ... +Preparing to unpack .../093-libx11-dev_2%3a1.8.7-1_armhf.deb ... Unpacking libx11-dev:armhf (2:1.8.7-1) ... Selecting previously unselected package libglx-dev:armhf. -Preparing to unpack .../100-libglx-dev_1.7.0-1_armhf.deb ... +Preparing to unpack .../094-libglx-dev_1.7.0-1_armhf.deb ... Unpacking libglx-dev:armhf (1.7.0-1) ... Selecting previously unselected package libgl-dev:armhf. -Preparing to unpack .../101-libgl-dev_1.7.0-1_armhf.deb ... +Preparing to unpack .../095-libgl-dev_1.7.0-1_armhf.deb ... Unpacking libgl-dev:armhf (1.7.0-1) ... Selecting previously unselected package libglvnd-core-dev:armhf. -Preparing to unpack .../102-libglvnd-core-dev_1.7.0-1_armhf.deb ... +Preparing to unpack .../096-libglvnd-core-dev_1.7.0-1_armhf.deb ... Unpacking libglvnd-core-dev:armhf (1.7.0-1) ... Selecting previously unselected package libwayland-server0:armhf. -Preparing to unpack .../103-libwayland-server0_1.22.0-2.1+b1_armhf.deb ... +Preparing to unpack .../097-libwayland-server0_1.22.0-2.1+b1_armhf.deb ... Unpacking libwayland-server0:armhf (1.22.0-2.1+b1) ... Selecting previously unselected package libgbm1:armhf. -Preparing to unpack .../104-libgbm1_23.3.5-1_armhf.deb ... +Preparing to unpack .../098-libgbm1_23.3.5-1_armhf.deb ... Unpacking libgbm1:armhf (23.3.5-1) ... Selecting previously unselected package libwayland-client0:armhf. -Preparing to unpack .../105-libwayland-client0_1.22.0-2.1+b1_armhf.deb ... +Preparing to unpack .../099-libwayland-client0_1.22.0-2.1+b1_armhf.deb ... Unpacking libwayland-client0:armhf (1.22.0-2.1+b1) ... Selecting previously unselected package libegl-mesa0:armhf. -Preparing to unpack .../106-libegl-mesa0_23.3.5-1_armhf.deb ... +Preparing to unpack .../100-libegl-mesa0_23.3.5-1_armhf.deb ... Unpacking libegl-mesa0:armhf (23.3.5-1) ... Selecting previously unselected package libegl1:armhf. -Preparing to unpack .../107-libegl1_1.7.0-1_armhf.deb ... +Preparing to unpack .../101-libegl1_1.7.0-1_armhf.deb ... Unpacking libegl1:armhf (1.7.0-1) ... Selecting previously unselected package libegl-dev:armhf. -Preparing to unpack .../108-libegl-dev_1.7.0-1_armhf.deb ... +Preparing to unpack .../102-libegl-dev_1.7.0-1_armhf.deb ... Unpacking libegl-dev:armhf (1.7.0-1) ... Selecting previously unselected package libgles1:armhf. -Preparing to unpack .../109-libgles1_1.7.0-1_armhf.deb ... +Preparing to unpack .../103-libgles1_1.7.0-1_armhf.deb ... Unpacking libgles1:armhf (1.7.0-1) ... Selecting previously unselected package libgles2:armhf. -Preparing to unpack .../110-libgles2_1.7.0-1_armhf.deb ... +Preparing to unpack .../104-libgles2_1.7.0-1_armhf.deb ... Unpacking libgles2:armhf (1.7.0-1) ... Selecting previously unselected package libgles-dev:armhf. -Preparing to unpack .../111-libgles-dev_1.7.0-1_armhf.deb ... +Preparing to unpack .../105-libgles-dev_1.7.0-1_armhf.deb ... Unpacking libgles-dev:armhf (1.7.0-1) ... Selecting previously unselected package libopengl0:armhf. -Preparing to unpack .../112-libopengl0_1.7.0-1_armhf.deb ... +Preparing to unpack .../106-libopengl0_1.7.0-1_armhf.deb ... Unpacking libopengl0:armhf (1.7.0-1) ... Selecting previously unselected package libopengl-dev:armhf. -Preparing to unpack .../113-libopengl-dev_1.7.0-1_armhf.deb ... +Preparing to unpack .../107-libopengl-dev_1.7.0-1_armhf.deb ... Unpacking libopengl-dev:armhf (1.7.0-1) ... Selecting previously unselected package libglvnd-dev:armhf. -Preparing to unpack .../114-libglvnd-dev_1.7.0-1_armhf.deb ... +Preparing to unpack .../108-libglvnd-dev_1.7.0-1_armhf.deb ... Unpacking libglvnd-dev:armhf (1.7.0-1) ... Selecting previously unselected package libgl1-mesa-dev:armhf. -Preparing to unpack .../115-libgl1-mesa-dev_23.3.5-1_armhf.deb ... +Preparing to unpack .../109-libgl1-mesa-dev_23.3.5-1_armhf.deb ... Unpacking libgl1-mesa-dev:armhf (23.3.5-1) ... Selecting previously unselected package libglu1-mesa:armhf. -Preparing to unpack .../116-libglu1-mesa_9.0.2-1.1_armhf.deb ... +Preparing to unpack .../110-libglu1-mesa_9.0.2-1.1_armhf.deb ... Unpacking libglu1-mesa:armhf (9.0.2-1.1) ... Selecting previously unselected package libglu1-mesa-dev:armhf. -Preparing to unpack .../117-libglu1-mesa-dev_9.0.2-1.1_armhf.deb ... +Preparing to unpack .../111-libglu1-mesa-dev_9.0.2-1.1_armhf.deb ... Unpacking libglu1-mesa-dev:armhf (9.0.2-1.1) ... Selecting previously unselected package libxext-dev:armhf. -Preparing to unpack .../118-libxext-dev_2%3a1.3.4-1+b1_armhf.deb ... +Preparing to unpack .../112-libxext-dev_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext-dev:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package x11-common. -Preparing to unpack .../119-x11-common_1%3a7.7+23_all.deb ... +Preparing to unpack .../113-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libice6:armhf. -Preparing to unpack .../120-libice6_2%3a1.0.10-1_armhf.deb ... +Preparing to unpack .../114-libice6_2%3a1.0.10-1_armhf.deb ... Unpacking libice6:armhf (2:1.0.10-1) ... Selecting previously unselected package libsm6:armhf. -Preparing to unpack .../121-libsm6_2%3a1.2.3-1_armhf.deb ... +Preparing to unpack .../115-libsm6_2%3a1.2.3-1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.3-1) ... Selecting previously unselected package libxt6:armhf. -Preparing to unpack .../122-libxt6_1%3a1.2.1-1.1_armhf.deb ... +Preparing to unpack .../116-libxt6_1%3a1.2.1-1.1_armhf.deb ... Unpacking libxt6:armhf (1:1.2.1-1.1) ... Selecting previously unselected package libice-dev:armhf. -Preparing to unpack .../123-libice-dev_2%3a1.0.10-1_armhf.deb ... +Preparing to unpack .../117-libice-dev_2%3a1.0.10-1_armhf.deb ... Unpacking libice-dev:armhf (2:1.0.10-1) ... Selecting previously unselected package libsm-dev:armhf. -Preparing to unpack .../124-libsm-dev_2%3a1.2.3-1_armhf.deb ... +Preparing to unpack .../118-libsm-dev_2%3a1.2.3-1_armhf.deb ... Unpacking libsm-dev:armhf (2:1.2.3-1) ... Selecting previously unselected package libxt-dev:armhf. -Preparing to unpack .../125-libxt-dev_1%3a1.2.1-1.1_armhf.deb ... +Preparing to unpack .../119-libxt-dev_1%3a1.2.1-1.1_armhf.deb ... Unpacking libxt-dev:armhf (1:1.2.1-1.1) ... Selecting previously unselected package libglut-dev:armhf. -Preparing to unpack .../126-libglut-dev_3.4.0-1+b1_armhf.deb ... +Preparing to unpack .../120-libglut-dev_3.4.0-1+b1_armhf.deb ... Unpacking libglut-dev:armhf (3.4.0-1+b1) ... Selecting previously unselected package freeglut3-dev:armhf. -Preparing to unpack .../127-freeglut3-dev_3.4.0-1+b1_armhf.deb ... +Preparing to unpack .../121-freeglut3-dev_3.4.0-1+b1_armhf.deb ... Unpacking freeglut3-dev:armhf (3.4.0-1+b1) ... Selecting previously unselected package gemmi-dev. -Preparing to unpack .../128-gemmi-dev_0.6.4+ds-1_armhf.deb ... +Preparing to unpack .../122-gemmi-dev_0.6.4+ds-1_armhf.deb ... Unpacking gemmi-dev (0.6.4+ds-1) ... Selecting previously unselected package libgfortran5:armhf. -Preparing to unpack .../129-libgfortran5_14-20240330-1_armhf.deb ... +Preparing to unpack .../123-libgfortran5_14-20240330-1_armhf.deb ... Unpacking libgfortran5:armhf (14-20240330-1) ... Selecting previously unselected package libopenblas0-pthread:armhf. -Preparing to unpack .../130-libopenblas0-pthread_0.3.26+ds-1_armhf.deb ... +Preparing to unpack .../124-libopenblas0-pthread_0.3.26+ds-1_armhf.deb ... Unpacking libopenblas0-pthread:armhf (0.3.26+ds-1) ... Selecting previously unselected package liblapack3:armhf. -Preparing to unpack .../131-liblapack3_3.12.0-3_armhf.deb ... +Preparing to unpack .../125-liblapack3_3.12.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.12.0-3) ... Selecting previously unselected package libopenblas-pthread-dev:armhf. -Preparing to unpack .../132-libopenblas-pthread-dev_0.3.26+ds-1_armhf.deb ... +Preparing to unpack .../126-libopenblas-pthread-dev_0.3.26+ds-1_armhf.deb ... Unpacking libopenblas-pthread-dev:armhf (0.3.26+ds-1) ... Selecting previously unselected package liblapack-dev:armhf. -Preparing to unpack .../133-liblapack-dev_3.12.0-3_armhf.deb ... +Preparing to unpack .../127-liblapack-dev_3.12.0-3_armhf.deb ... Unpacking liblapack-dev:armhf (3.12.0-3) ... Selecting previously unselected package libmmdb2-0:armhf. -Preparing to unpack .../134-libmmdb2-0_2.0.22-1+b1_armhf.deb ... +Preparing to unpack .../128-libmmdb2-0_2.0.22-1+b1_armhf.deb ... Unpacking libmmdb2-0:armhf (2.0.22-1+b1) ... Selecting previously unselected package libmmdb2-dev. -Preparing to unpack .../135-libmmdb2-dev_2.0.22-1+b1_armhf.deb ... +Preparing to unpack .../129-libmmdb2-dev_2.0.22-1+b1_armhf.deb ... Unpacking libmmdb2-dev (2.0.22-1+b1) ... Selecting previously unselected package libopenmm8.0t64. -Preparing to unpack .../136-libopenmm8.0t64_8.0.0+dfsg-6.1_armhf.deb ... +Preparing to unpack .../130-libopenmm8.0t64_8.0.0+dfsg-6.1_armhf.deb ... Unpacking libopenmm8.0t64 (8.0.0+dfsg-6.1) ... Selecting previously unselected package libopenmm-dev. -Preparing to unpack .../137-libopenmm-dev_8.0.0+dfsg-6.1_armhf.deb ... +Preparing to unpack .../131-libopenmm-dev_8.0.0+dfsg-6.1_armhf.deb ... Unpacking libopenmm-dev (8.0.0+dfsg-6.1) ... Selecting previously unselected package libxfixes-dev:armhf. -Preparing to unpack .../138-libxfixes-dev_1%3a6.0.0-2_armhf.deb ... +Preparing to unpack .../132-libxfixes-dev_1%3a6.0.0-2_armhf.deb ... Unpacking libxfixes-dev:armhf (1:6.0.0-2) ... Selecting previously unselected package libxi-dev:armhf. -Preparing to unpack .../139-libxi-dev_2%3a1.8.1-1_armhf.deb ... +Preparing to unpack .../133-libxi-dev_2%3a1.8.1-1_armhf.deb ... Unpacking libxi-dev:armhf (2:1.8.1-1) ... Selecting previously unselected package libxmu6:armhf. -Preparing to unpack .../140-libxmu6_2%3a1.1.3-3_armhf.deb ... +Preparing to unpack .../134-libxmu6_2%3a1.1.3-3_armhf.deb ... Unpacking libxmu6:armhf (2:1.1.3-3) ... Selecting previously unselected package libxmu-headers. -Preparing to unpack .../141-libxmu-headers_2%3a1.1.3-3_all.deb ... +Preparing to unpack .../135-libxmu-headers_2%3a1.1.3-3_all.deb ... Unpacking libxmu-headers (2:1.1.3-3) ... Selecting previously unselected package libxmu-dev:armhf. -Preparing to unpack .../142-libxmu-dev_2%3a1.1.3-3_armhf.deb ... +Preparing to unpack .../136-libxmu-dev_2%3a1.1.3-3_armhf.deb ... Unpacking libxmu-dev:armhf (2:1.1.3-3) ... Selecting previously unselected package libsimbody3.7:armhf. -Preparing to unpack .../143-libsimbody3.7_3.7+dfsg-3_armhf.deb ... +Preparing to unpack .../137-libsimbody3.7_3.7+dfsg-3_armhf.deb ... Unpacking libsimbody3.7:armhf (3.7+dfsg-3) ... Selecting previously unselected package libsimbody-dev:armhf. -Preparing to unpack .../144-libsimbody-dev_3.7+dfsg-3_armhf.deb ... +Preparing to unpack .../138-libsimbody-dev_3.7+dfsg-3_armhf.deb ... Unpacking libsimbody-dev:armhf (3.7+dfsg-3) ... Selecting previously unselected package tao-pegtl-dev. -Preparing to unpack .../145-tao-pegtl-dev_3.2.7-1_all.deb ... +Preparing to unpack .../139-tao-pegtl-dev_3.2.7-1_all.deb ... Unpacking tao-pegtl-dev (3.2.7-1) ... Selecting previously unselected package zlib1g-dev:armhf. -Preparing to unpack .../146-zlib1g-dev_1%3a1.3.dfsg-3+b1_armhf.deb ... +Preparing to unpack .../140-zlib1g-dev_1%3a1.3.dfsg-3+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libwayland-server0:armhf (1.22.0-2.1+b1) ... Setting up libxau6:armhf (1:1.0.9-1) ... -Setting up libkeyutils1:armhf (1.6.3-3) ... Setting up libpsl5:armhf (0.21.2-1+b1) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... @@ -742,11 +749,9 @@ Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... -Setting up libcom-err2:armhf (1.47.0-2+b1) ... Setting up file (1:5.45-2+b1) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libopengl0:armhf (1.7.0-1) ... -Setting up libkrb5support0:armhf (1.20.1-5+b1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-4+b1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... @@ -761,7 +766,6 @@ Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:armhf (1.9.5-6+b2) ... Setting up libsensors5:armhf (1:3.6.0-9) ... -Setting up libk5crypto3:armhf (1.20.1-5+b1) ... Setting up libglapi-mesa:armhf (23.3.5-1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:armhf (14-20240330-1) ... @@ -777,7 +781,6 @@ Setting up libssh2-1:armhf (1.11.0-4) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up cmake-data (3.28.3-1) ... -Setting up libkrb5-3:armhf (1.20.1-5+b1) ... Setting up libglu1-mesa:armhf (9.0.2-1.1) ... Setting up libopengl-dev:armhf (1.7.0-1) ... Setting up libbsd0:armhf (0.12.2-1) ... @@ -814,7 +817,6 @@ Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libxcb-sync1:armhf (1.15-1) ... -Setting up libgssapi-krb5-2:armhf (1.20.1-5+b1) ... Setting up libxcb-dri2-0:armhf (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:armhf (2.4.120-2) ... @@ -885,7 +887,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/molmodel-3.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../molmodel_3.1.0-4.1_source.changes +I: user script /srv/workspace/pbuilder/15198/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/15198/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/molmodel-3.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../molmodel_3.1.0-4.1_source.changes dpkg-buildpackage: info: source package molmodel dpkg-buildpackage: info: source version 3.1.0-4.1 dpkg-buildpackage: info: source distribution unstable @@ -933,7 +939,7 @@ This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) --- Configuring done (4.3s) +-- Configuring done (3.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -946,7 +952,7 @@ -- Build files have been written to: /build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/molmodel-3.1.0' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/molmodel-3.1.0 -B/build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -958,12 +964,14 @@ make[3]: Leaving directory '/build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/SimTKmolmodel.dir/build.make CMakeFiles/SimTKmolmodel.dir/build make[3]: Entering directory '/build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf' -[ 9%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -[ 9%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -[ 9%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o +[ 3%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/About.cpp +[ 6%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/AtomSubsystem.cpp +[ 9%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Biotype.cpp +[ 12%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/BondGeometry.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /build/reproducible-path/molmodel-3.1.0/src/About.cpp:37: @@ -1013,6 +1021,31 @@ | ^ In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/bondGeometry.h:35, + from /build/reproducible-path/molmodel-3.1.0/src/BondGeometry.cpp:1: +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': +/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1169 | approxCompleteEllipticIntegralsKE(double m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(float)': +/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1177 | approxCompleteEllipticIntegralsKE(float m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(int)': +/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1186 | approxCompleteEllipticIntegralsKE(int m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(float)': +/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1257 | inline std::pair completeEllipticIntegralsKE(float m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(int)': +/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1265 | inline std::pair completeEllipticIntegralsKE(int m) + | ^ +In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, + from /usr/include/simbody/SimTKcommon.h:35, from /usr/include/simbody/SimTKsimbody.h:43, from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h:4, from /build/reproducible-path/molmodel-3.1.0/src/AtomSubsystem.cpp:1: @@ -1062,8 +1095,23 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -[ 12%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/BondGeometry.cpp +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': +/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 15%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp +[ 18%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/CompoundSystem.cpp /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h: At global scope: /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 180 | : public std::iterator > @@ -1079,9 +1127,8 @@ | ^~~~~~~~ In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/bondGeometry.h:35, - from /build/reproducible-path/molmodel-3.1.0/src/BondGeometry.cpp:1: + from /usr/include/simbody/SimTKsimbody.h:43, + from /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:32: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1115,25 +1162,11 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': -/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -[ 15%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /usr/include/simbody/SimTKsimbody.h:43, - from /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:32: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/CompoundSystem.h:4, + from /build/reproducible-path/molmodel-3.1.0/src/CompoundSystem.cpp:1: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1184,6 +1217,38 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, SimTK::AtomSubsystem::AtomIndex>*, std::vector, SimTK::AtomSubsystem::AtomIndex>, std::allocator, SimTK::AtomSubsystem::AtomIndex> > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/molmodel-3.1.0/src/CompoundAtom.h:36, + from /build/reproducible-path/molmodel-3.1.0/src/CompoundRep.h:42, + from /build/reproducible-path/molmodel-3.1.0/src/CompoundSystem.cpp:3: +/build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h: At global scope: +/build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 180 | : public std::iterator > + | ^~~~~~~~ +In file included from /usr/include/c++/13/bits/stl_algobase.h:65, + from /usr/include/c++/13/bits/specfun.h:43, + from /usr/include/c++/13/cmath:3699, + from /usr/include/simbody/SimTKcommon/internal/common.h:255, + from /usr/include/simbody/SimTKcommon/basics.h:38, + from /usr/include/simbody/SimTKcommon.h:32: +/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/reproducible-path/molmodel-3.1.0/src/CompoundAtom.h:36, + from /build/reproducible-path/molmodel-3.1.0/src/CompoundRep.h:42, + from /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:45: +/build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h: At global scope: +/build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 180 | : public std::iterator > + | ^~~~~~~~ +In file included from /usr/include/c++/13/bits/stl_algobase.h:65, + from /usr/include/c++/13/bits/specfun.h:43, + from /usr/include/c++/13/cmath:3699, + from /usr/include/simbody/SimTKcommon/internal/common.h:255, + from /usr/include/simbody/SimTKcommon/basics.h:38, + from /usr/include/simbody/SimTKcommon.h:32: +/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::AtomSubsystem::Atom}; _Tp = SimTK::AtomSubsystem::Atom; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -1194,13 +1259,38 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 18%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/CompoundSystem.cpp +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': +/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': +/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 21%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystem.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /usr/include/simbody/SimTKsimbody.h:43, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/CompoundSystem.h:4, - from /build/reproducible-path/molmodel-3.1.0/src/CompoundSystem.cpp:1: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, + from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystem.cpp:40: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1221,51 +1311,32 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -In file included from /build/reproducible-path/molmodel-3.1.0/src/CompoundAtom.h:36, - from /build/reproducible-path/molmodel-3.1.0/src/CompoundRep.h:42, - from /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:45: -/build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h: At global scope: -/build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 180 | : public std::iterator > - | ^~~~~~~~ -In file included from /usr/include/c++/13/bits/stl_algobase.h:65, - from /usr/include/c++/13/bits/specfun.h:43, - from /usr/include/c++/13/cmath:3699, - from /usr/include/simbody/SimTKcommon/internal/common.h:255, - from /usr/include/simbody/SimTKcommon/basics.h:38, - from /usr/include/simbody/SimTKcommon.h:32: -/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': -/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -In file included from /build/reproducible-path/molmodel-3.1.0/src/CompoundAtom.h:36, - from /build/reproducible-path/molmodel-3.1.0/src/CompoundRep.h:42, - from /build/reproducible-path/molmodel-3.1.0/src/CompoundSystem.cpp:3: -/build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h: At global scope: -/build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 180 | : public std::iterator > - | ^~~~~~~~ -In file included from /usr/include/c++/13/bits/stl_algobase.h:65, - from /usr/include/c++/13/bits/specfun.h:43, - from /usr/include/c++/13/cmath:3699, - from /usr/include/simbody/SimTKcommon/internal/common.h:255, +In file included from /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.h:28, + from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.h:50, + from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystem.cpp:43: +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/string:49, + from /usr/include/c++/13/bits/locale_classes.h:40, + from /usr/include/c++/13/bits/ios_base.h:41, + from /usr/include/c++/13/ios:44, + from /usr/include/c++/13/istream:40, + from /usr/include/c++/13/sstream:40, + from /usr/include/c++/13/complex:45, + from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32: -/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ +/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { + | ^~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -1354,12 +1425,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 21%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystem.cpp +[ 25%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, - from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystem.cpp:40: + from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.cpp:38: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1380,8 +1451,47 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -[ 25%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.cpp +In file included from /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.h:28, + from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.h:50, + from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.cpp:40: +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/string:49, + from /usr/include/c++/13/bits/locale_classes.h:40, + from /usr/include/c++/13/bits/ios_base.h:41, + from /usr/include/c++/13/ios:44, + from /usr/include/c++/13/istream:40, + from /usr/include/c++/13/sstream:40, + from /usr/include/c++/13/complex:45, + from /usr/include/simbody/SimTKcommon/internal/common.h:257, + from /usr/include/simbody/SimTKcommon/basics.h:38, + from /usr/include/simbody/SimTKcommon.h:32: +/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { + | ^~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': +/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 28%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Element.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53: @@ -1409,10 +1519,12 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 31%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/MolecularMechanicsSystem.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, - from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.cpp:38: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/Element.h:35, + from /build/reproducible-path/molmodel-3.1.0/src/Element.cpp:34: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1443,32 +1555,6 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, SimTK::UnitVec >*, std::vector, SimTK::UnitVec > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.h:28, - from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.h:50, - from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystem.cpp:43: -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { - | ^~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/string:49, - from /usr/include/c++/13/bits/locale_classes.h:40, - from /usr/include/c++/13/bits/ios_base.h:41, - from /usr/include/c++/13/ios:44, - from /usr/include/c++/13/istream:40, - from /usr/include/c++/13/sstream:40, - from /usr/include/c++/13/complex:45, - from /usr/include/simbody/SimTKcommon/internal/common.h:257, - from /usr/include/simbody/SimTKcommon/basics.h:38, - from /usr/include/simbody/SimTKcommon.h:32: -/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { - | ^~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Vec3Pair}; _Tp = SimTK::Vec3Pair; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -1479,6 +1565,30 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, + from /usr/include/simbody/SimTKcommon.h:35, + from /usr/include/simbody/SimTKsimbody.h:43, + from /build/reproducible-path/molmodel-3.1.0/src/MolecularMechanicsSystem.cpp:37: +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': +/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1169 | approxCompleteEllipticIntegralsKE(double m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(float)': +/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1177 | approxCompleteEllipticIntegralsKE(float m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(int)': +/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1186 | approxCompleteEllipticIntegralsKE(int m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(float)': +/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1257 | inline std::pair completeEllipticIntegralsKE(float m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(int)': +/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1265 | inline std::pair completeEllipticIntegralsKE(int m) + | ^ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -1514,43 +1624,27 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.h:28, - from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.h:50, - from /build/reproducible-path/molmodel-3.1.0/src/DuMMForceFieldSubsystemRep.cpp:40: -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { - | ^~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/string:49, - from /usr/include/c++/13/bits/locale_classes.h:40, - from /usr/include/c++/13/bits/ios_base.h:41, - from /usr/include/c++/13/ios:44, - from /usr/include/c++/13/istream:40, - from /usr/include/c++/13/sstream:40, - from /usr/include/c++/13/complex:45, - from /usr/include/simbody/SimTKcommon/internal/common.h:257, - from /usr/include/simbody/SimTKcommon/basics.h:38, - from /usr/include/simbody/SimTKcommon.h:32: -/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { - | ^~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const SimTK::Compound::AtomIndex&, SimTK::CompoundAtom, bool}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Compound::AtomIndex&, const SimTK::CompoundAtom&, bool&}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Compound::AtomIndex&, const SimTK::CompoundAtom&, bool&}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator]', + inlined from 'SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(SimTK::Compound::Name, const SimTK::Compound&, bool)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:1213:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Compound::BondIndex&, SimTK::Compound::BondCenterIndex, SimTK::Compound::BondCenterIndex, const SimTK::Bond&}; _Tp = SimTK::BondInfo; _Alloc = std::allocator]', + inlined from 'SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(SimTK::Compound::Name, const SimTK::Compound&, bool)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:1275:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': /usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -1559,37 +1653,36 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Compound::AtomIndex&, const SimTK::CompoundAtom&, bool&}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator]', - inlined from 'SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(SimTK::Compound::Name, const SimTK::Compound&, bool)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:1213:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Compound::BondIndex&, SimTK::Compound::BondCenterIndex, SimTK::Compound::BondCenterIndex, const SimTK::Bond&}; _Tp = SimTK::BondInfo; _Alloc = std::allocator]', - inlined from 'SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(SimTK::Compound::Name, const SimTK::Compound&, bool)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:1275:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 34%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/PDBReader.cpp In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const SimTK::Compound::AtomIndex&, SimTK::CompoundAtom, bool}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator]', inlined from 'SimTK::CompoundRep& SimTK::CompoundRep::setBaseAtom(const SimTK::Compound::AtomName&, const SimTK::Element*, const SimTK::Transform&)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:274:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]', - inlined from 'void SimTK::Protein::loadFromPdbChain(const SimTK::PdbChain&, SimTK::Real)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:2999:42: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]', - inlined from 'SimTK::Compound& SimTK::Compound::fitDefaultConfiguration(const AtomTargetLocations&, SimTK::Real, bool, SimTK::Real)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:2203:42: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 28%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Element.cpp +In file included from /usr/include/c++/13/vector:72, + from /usr/include/simbody/SimTKcommon/internal/Array.h:39, + from /usr/include/simbody/SimTKcommon/basics.h:53, + from /usr/include/simbody/SimTKcommon.h:32: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, 1> >}; _Tp = std::pair > >; _Alloc = std::allocator > > >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector > > >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, 1> >}; _Tp = std::pair > >; _Alloc = std::allocator > > >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair > >; _Alloc = std::allocator > > >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void SimTK::MolecularMechanicsSystem::removeSystemRigidBodyMomentum(SimTK::State&, bool) const' at /build/reproducible-path/molmodel-3.1.0/src/MolecularMechanicsSystem.cpp:154:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >*, std::vector > > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/Element.h:35, - from /build/reproducible-path/molmodel-3.1.0/src/Element.cpp:34: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/PDBReader.h:35, + from /build/reproducible-path/molmodel-3.1.0/src/PDBReader.cpp:33: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1610,25 +1703,19 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': -/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -[ 31%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/MolecularMechanicsSystem.cpp +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >; _Alloc = std::allocator > >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void SimTK::MolecularMechanicsSystem::moveSystemMassCenter(SimTK::State&, const SimTK::Vec3&) const' at /build/reproducible-path/molmodel-3.1.0/src/MolecularMechanicsSystem.cpp:186:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 37%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Pdb.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /usr/include/simbody/SimTKsimbody.h:43, - from /build/reproducible-path/molmodel-3.1.0/src/MolecularMechanicsSystem.cpp:37: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/Pdb.h:4, + from /build/reproducible-path/molmodel-3.1.0/src/Pdb.cpp:4: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1649,38 +1736,21 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -[ 34%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/PDBReader.cpp -In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, - from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/PDBReader.h:35, - from /build/reproducible-path/molmodel-3.1.0/src/PDBReader.cpp:33: -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': -/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1169 | approxCompleteEllipticIntegralsKE(double m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(float)': -/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1177 | approxCompleteEllipticIntegralsKE(float m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(int)': -/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1186 | approxCompleteEllipticIntegralsKE(int m) - | ^ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]', + inlined from 'void SimTK::Protein::loadFromPdbChain(const SimTK::PdbChain&, SimTK::Real)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:2999:42: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]', + inlined from 'SimTK::Compound& SimTK::Compound::fitDefaultConfiguration(const AtomTargetLocations&, SimTK::Real, bool, SimTK::Real)' at /build/reproducible-path/molmodel-3.1.0/src/Compound.cpp:2203:42: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(float)': -/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1257 | inline std::pair completeEllipticIntegralsKE(float m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(int)': -/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1265 | inline std::pair completeEllipticIntegralsKE(int m) - | ^ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': /usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -1689,37 +1759,26 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -In file included from /usr/include/c++/13/vector:72, - from /usr/include/simbody/SimTKcommon/internal/Array.h:39, - from /usr/include/simbody/SimTKcommon/basics.h:53, - from /usr/include/simbody/SimTKcommon.h:32: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, 1> >}; _Tp = std::pair > >; _Alloc = std::allocator > > >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector > > >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, 1> >}; _Tp = std::pair > >; _Alloc = std::allocator > > >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair > >; _Alloc = std::allocator > > >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void SimTK::MolecularMechanicsSystem::removeSystemRigidBodyMomentum(SimTK::State&, bool) const' at /build/reproducible-path/molmodel-3.1.0/src/MolecularMechanicsSystem.cpp:154:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >*, std::vector > > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >}; _Tp = std::pair >; _Alloc = std::allocator > >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >; _Alloc = std::allocator > >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void SimTK::MolecularMechanicsSystem::moveSystemMassCenter(SimTK::State&, const SimTK::Vec3&) const' at /build/reproducible-path/molmodel-3.1.0/src/MolecularMechanicsSystem.cpp:186:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 37%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Pdb.cpp +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': +/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 40%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/PeriodicVmdReporter.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /usr/include/simbody/SimTKsimbody.h:43, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/Pdb.h:4, - from /build/reproducible-path/molmodel-3.1.0/src/Pdb.cpp:4: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/PeriodicVmdReporter.h:35, + from /build/reproducible-path/molmodel-3.1.0/src/PeriodicVmdReporter.cpp:1: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1740,26 +1799,15 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -[ 40%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/PeriodicVmdReporter.cpp -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': -/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 43%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Representation.cpp +[ 46%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/RiboseMobilizer.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /usr/include/simbody/SimTKsimbody.h:43, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/PeriodicVmdReporter.h:35, - from /build/reproducible-path/molmodel-3.1.0/src/PeriodicVmdReporter.cpp:1: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/RiboseMobilizer.h:35, + from /build/reproducible-path/molmodel-3.1.0/src/RiboseMobilizer.cpp:32: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1806,10 +1854,8 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -[ 43%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/Representation.cpp -[ 46%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/RiboseMobilizer.cpp +[ 50%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/TinkerAmber99.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -1832,9 +1878,8 @@ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /usr/include/simbody/SimTKsimbody.h:43, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/RiboseMobilizer.h:35, - from /build/reproducible-path/molmodel-3.1.0/src/RiboseMobilizer.cpp:32: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, + from /build/reproducible-path/molmodel-3.1.0/src/TinkerAmber99.cpp:2: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -1859,83 +1904,6 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = gemmi::FTransform; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)' at /usr/include/gemmi/unitcell.hpp:348:23: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const gemmi::CisPep&}; _Tp = gemmi::CisPep; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': -/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Repr::Atom}; _Tp = Repr::Atom; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:504:33: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:507:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:509:36: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:520:52: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -1956,24 +1924,10 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = gemmi::CisPep; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::process_conn(gemmi::Structure&, const std::vector >&)' at /usr/include/gemmi/pdb.hpp:212:27: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -[ 50%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/TinkerAmber99.cpp +[ 53%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/VanderWallSphere.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]': @@ -1992,54 +1946,41 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::add_restraint_count_weight(gemmi::RefinementInfo&, const char*, const char*)' at /usr/include/gemmi/remarks.hpp:162:36: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]', - inlined from 'T& gemmi::impl::find_or_add(std::vector >&, const std::string&) [with T = gemmi::RefinementInfo::Restr]' at /usr/include/gemmi/model.hpp:43:19, - inlined from 'T& gemmi::impl::find_or_add(std::vector >&, const std::string&) [with T = gemmi::RefinementInfo::Restr]' at /usr/include/gemmi/model.hpp:40:4: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const gemmi::CisPep&}; _Tp = gemmi::CisPep; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:325:39: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:381:35: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator]', - inlined from 'void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:385:49: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const gemmi::CisPep&}; _Tp = gemmi::CisPep; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, - from /build/reproducible-path/molmodel-3.1.0/src/TinkerAmber99.cpp:2: + from /usr/include/simbody/SimTKsimbody.h:43, + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/VanderWallSphere.h:4, + from /build/reproducible-path/molmodel-3.1.0/src/VanderWallSphere.cpp:1: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -2060,6 +2001,47 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = gemmi::FTransform; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)' at /usr/include/gemmi/unitcell.hpp:348:23: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': +/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const gemmi::CisPep&}; _Tp = gemmi::CisPep; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Repr::Atom}; _Tp = Repr::Atom; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -2076,27 +2058,32 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]', - inlined from 'gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]' at /usr/include/gemmi/pdb.hpp:320:31: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:504:33: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]', - inlined from 'gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]' at /usr/include/gemmi/pdb.hpp:359:37: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:507:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]', - inlined from 'gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]' at /usr/include/gemmi/pdb.hpp:372:33: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:509:36: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]' at /usr/include/gemmi/pdb.hpp:538:27: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:520:52: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = gemmi::CisPep; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::process_conn(gemmi::Structure&, const std::vector >&)' at /usr/include/gemmi/pdb.hpp:212:27: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -2107,6 +2094,10 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]', inlined from 'void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:504:33: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -2140,12 +2131,46 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::add_restraint_count_weight(gemmi::RefinementInfo&, const char*, const char*)' at /usr/include/gemmi/remarks.hpp:162:36: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = gemmi::CisPep; _Alloc = std::allocator]', inlined from 'void gemmi::pdb_impl::process_conn(gemmi::Structure&, const std::vector >&)' at /usr/include/gemmi/pdb.hpp:212:27: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]', + inlined from 'T& gemmi::impl::find_or_add(std::vector >&, const std::string&) [with T = gemmi::RefinementInfo::Restr]' at /usr/include/gemmi/model.hpp:43:19, + inlined from 'T& gemmi::impl::find_or_add(std::vector >&, const std::string&) [with T = gemmi::RefinementInfo::Restr]' at /usr/include/gemmi/model.hpp:40:4: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:325:39: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:381:35: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator]', + inlined from 'void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)' at /usr/include/gemmi/remarks.hpp:385:49: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -2154,6 +2179,29 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]', + inlined from 'gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]' at /usr/include/gemmi/pdb.hpp:320:31: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]', + inlined from 'gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]' at /usr/include/gemmi/pdb.hpp:359:37: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]', + inlined from 'gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]' at /usr/include/gemmi/pdb.hpp:372:33: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]' at /usr/include/gemmi/pdb.hpp:538:27: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/VelocityRescalingThermostat.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -2196,19 +2244,9 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Repr::Atom}; _Tp = Repr::Atom; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Repr::Atom; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'SimTK::PDBReader::PDBReaderImpl::PDBReaderImpl(const std::string&, bool)' at /build/reproducible-path/molmodel-3.1.0/src/PDBReader.cpp:186:49: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/VanderWallSphere.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /usr/include/simbody/SimTKsimbody.h:43, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/VanderWallSphere.h:4, - from /build/reproducible-path/molmodel-3.1.0/src/VanderWallSphere.cpp:1: + from /build/reproducible-path/molmodel-3.1.0/src/VelocityRescalingThermostat.cpp:32: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -2242,11 +2280,19 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -[ 56%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/VelocityRescalingThermostat.cpp +In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Repr::Atom}; _Tp = Repr::Atom; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Repr::Atom; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'SimTK::PDBReader::PDBReaderImpl::PDBReaderImpl(const std::string&, bool)' at /build/reproducible-path/molmodel-3.1.0/src/PDBReader.cpp:186:49: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 59%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/VmdConnection.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/src/VelocityRescalingThermostat.cpp:32: + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, + from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/VmdConnection.h:4, + from /build/reproducible-path/molmodel-3.1.0/src/VmdConnection.cpp:1: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -2267,15 +2313,27 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -[ 59%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/VmdConnection.cpp [ 62%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/CpuImplicitSolvent.cpp +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': +/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 65%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/CpuObc.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/common.h:40, - from /build/reproducible-path/molmodel-3.1.0/./include/molmodel/internal/VmdConnection.h:4, - from /build/reproducible-path/molmodel-3.1.0/src/VmdConnection.cpp:1: + from /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:28, + from /build/reproducible-path/molmodel-3.1.0/src/gbsa/CpuImplicitSolvent.cpp:25: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -2299,7 +2357,7 @@ In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:28, - from /build/reproducible-path/molmodel-3.1.0/src/gbsa/CpuImplicitSolvent.cpp:25: + from /build/reproducible-path/molmodel-3.1.0/src/gbsa/CpuObc.cpp:26: /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) @@ -2320,34 +2378,8 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': -/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': -/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -[ 65%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/CpuObc.cpp +[ 68%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/ImplicitSolventParameters.cpp /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { @@ -2384,34 +2416,6 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, - from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:28, - from /build/reproducible-path/molmodel-3.1.0/src/gbsa/CpuObc.cpp:26: -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': -/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1169 | approxCompleteEllipticIntegralsKE(double m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(float)': -/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1177 | approxCompleteEllipticIntegralsKE(float m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(int)': -/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1186 | approxCompleteEllipticIntegralsKE(int m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(float)': -/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1257 | inline std::pair completeEllipticIntegralsKE(float m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(int)': -/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1265 | inline std::pair completeEllipticIntegralsKE(int m) - | ^ -[ 68%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/ImplicitSolventParameters.cpp -[ 71%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.cpp /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { @@ -2435,19 +2439,6 @@ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': -/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:28, @@ -2456,6 +2447,11 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1169 | approxCompleteEllipticIntegralsKE(double m) | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(float)': /usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1177 | approxCompleteEllipticIntegralsKE(float m) @@ -2472,61 +2468,6 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, - from /usr/include/simbody/SimTKcommon.h:35, - from /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:28, - from /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.h:28, - from /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.cpp:26: -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': -/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1169 | approxCompleteEllipticIntegralsKE(double m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(float)': -/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1177 | approxCompleteEllipticIntegralsKE(float m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(int)': -/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1186 | approxCompleteEllipticIntegralsKE(int m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(float)': -/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1257 | inline std::pair completeEllipticIntegralsKE(float m) - | ^ -/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(int)': -/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1265 | inline std::pair completeEllipticIntegralsKE(int m) - | ^ -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { - | ^~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/string:49, - from /usr/include/c++/13/bits/locale_classes.h:40, - from /usr/include/c++/13/bits/ios_base.h:41, - from /usr/include/c++/13/ios:44, - from /usr/include/c++/13/istream:40, - from /usr/include/c++/13/sstream:40, - from /usr/include/c++/13/complex:45, - from /usr/include/simbody/SimTKcommon/internal/common.h:257, - from /usr/include/simbody/SimTKcommon/basics.h:38, - from /usr/include/simbody/SimTKcommon.h:32: -/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { - | ^~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.cpp -/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': -/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here -/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': /usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -2535,6 +2476,8 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 71%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.cpp /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { @@ -2571,6 +2514,33 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 75%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.cpp +In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, + from /usr/include/simbody/SimTKcommon.h:35, + from /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:28, + from /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.h:28, + from /build/reproducible-path/molmodel-3.1.0/src/gbsa/ObcParameters.cpp:26: +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(double)': +/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1169 | approxCompleteEllipticIntegralsKE(double m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(float)': +/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1177 | approxCompleteEllipticIntegralsKE(float m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::approxCompleteEllipticIntegralsKE(int)': +/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1186 | approxCompleteEllipticIntegralsKE(int m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(float)': +/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1257 | inline std::pair completeEllipticIntegralsKE(float m) + | ^ +/usr/include/simbody/SimTKcommon/Scalar.h: In function 'std::pair SimTK::completeEllipticIntegralsKE(int)': +/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1265 | inline std::pair completeEllipticIntegralsKE(int m) + | ^ [ 78%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMLog.cpp [ 81%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o @@ -2624,6 +2594,42 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/string:49, + from /usr/include/c++/13/bits/locale_classes.h:40, + from /usr/include/c++/13/bits/ios_base.h:41, + from /usr/include/c++/13/ios:44, + from /usr/include/c++/13/istream:40, + from /usr/include/c++/13/sstream:40, + from /usr/include/c++/13/complex:45, + from /usr/include/simbody/SimTKcommon/internal/common.h:257, + from /usr/include/simbody/SimTKcommon/basics.h:38, + from /usr/include/simbody/SimTKcommon.h:32: +/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { + | ^~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1095 | static inline std::pair approxCompleteEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]': +/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1192 | static inline std::pair completeEllipticIntegralsKE_T(T m) { + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': +/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here +/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:28, @@ -2723,6 +2729,10 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 87%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/imd.cpp +[ 90%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o +/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/vmdsock.cpp /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { @@ -2759,8 +2769,6 @@ /usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of 'std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]': /usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here /usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 -[ 87%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/imd.cpp In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36, from /usr/include/simbody/SimTKcommon.h:35, from /build/reproducible-path/molmodel-3.1.0/src/gbsa/cpuObcInterface.h:34, @@ -2785,8 +2793,6 @@ /usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1265 | inline std::pair completeEllipticIntegralsKE(int m) | ^ -[ 90%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/build/reproducible-path/molmodel-3.1.0/src -I/build/reproducible-path/molmodel-3.1.0/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/build/reproducible-path/molmodel-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -c /build/reproducible-path/molmodel-3.1.0/src/vmdsock.cpp In file included from /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMLog.h:28, from /build/reproducible-path/molmodel-3.1.0/src/gbsa/cpuObcInterface.cpp:27: /build/reproducible-path/molmodel-3.1.0/src/gbsa/SimTKOpenMMCommon.h: At global scope: @@ -2927,7 +2933,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/molmodel-3.1.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/molmodel-3.1.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/molmodel-3.1.0 -B/build/reproducible-path/molmodel-3.1.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -3002,17 +3008,17 @@ dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol _ZN5gemmi15change_ccd_codeERNS_9StructureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_ used by debian/libsimtkmolmodel3.1t64/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN5gemmi25make_structure_from_blockERKNS_3cif5BlockE used by debian/libsimtkmolmodel3.1t64/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN5gemmi19remove_entity_typesERNS_9StructureE used by debian/libsimtkmolmodel3.1t64/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libsimtkmolmodel3.1t64/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi16assign_subchainsERNS_9StructureEbb used by debian/libsimtkmolmodel3.1t64/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN5gemmi19remove_entity_typesERNS_9StructureE used by debian/libsimtkmolmodel3.1t64/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN5gemmi25make_structure_from_blockERKNS_3cif5BlockE used by debian/libsimtkmolmodel3.1t64/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries dh_installdeb dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.1.0-4.1_armhf.deb'. dpkg-deb: building package 'libsimtkmolmodel3.1t64-dbgsym' in '../libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_armhf.deb'. dpkg-deb: building package 'libsimtkmolmodel-plugins-dbgsym' in '../libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_armhf.deb'. -dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.1.0-4.1_armhf.deb'. dpkg-deb: building package 'libsimtkmolmodel3.1t64' in '../libsimtkmolmodel3.1t64_3.1.0-4.1_armhf.deb'. dpkg-deb: building package 'libsimtkmolmodel-plugins' in '../libsimtkmolmodel-plugins_3.1.0-4.1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../molmodel_3.1.0-4.1_armhf.buildinfo @@ -3022,12 +3028,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/15198/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/15198/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/19364 and its subdirectories -I: Current time: Wed Apr 24 07:07:18 -12 2024 -I: pbuilder-time-stamp: 1713985638 +I: removing directory /srv/workspace/pbuilder/15198 and its subdirectories +I: Current time: Thu Apr 25 09:28:42 +14 2024 +I: pbuilder-time-stamp: 1713986922