Diff of the two buildlogs: -- --- b1/build.log 2024-11-11 06:38:44.628516856 +0000 +++ b2/build.log 2024-11-11 06:52:49.374343973 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 10 18:25:12 -12 2024 -I: pbuilder-time-stamp: 1731306312 +I: Current time: Mon Nov 11 20:39:33 +14 2024 +I: pbuilder-time-stamp: 1731307173 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking libcifpp_7.0.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/24011/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/7684/tmp/hooks/D01_modify_environment starting +debug: Running on virt64c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 11 06:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/7684/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/7684/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='5894f06327794822bfc04db8bb83218b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='24011' - PS1='# ' - PS2='> ' + INVOCATION_ID=ee7e0ab8ebe941669eb769f7f8b25d52 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=7684 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qd011K5q/pbuilderrc_MAq6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qd011K5q/b1 --logfile b1/build.log libcifpp_7.0.7-3.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qd011K5q/pbuilderrc_3sO9 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qd011K5q/b2 --logfile b2/build.log libcifpp_7.0.7-3.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32a 6.1.0-27-armmp-lpae #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/24011/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/7684/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -340,7 +372,7 @@ Get: 209 http://deb.debian.org/debian trixie/main armhf python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 210 http://deb.debian.org/debian trixie/main armhf python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [29.5 kB] Get: 211 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] -Fetched 149 MB in 21s (7147 kB/s) +Fetched 149 MB in 3s (48.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19691 files and directories currently installed.) @@ -1035,8 +1067,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Nov 11 06:27:31 UTC 2024. -Universal Time is now: Mon Nov 11 06:27:31 UTC 2024. +Local time is now: Mon Nov 11 06:41:07 UTC 2024. +Universal Time is now: Mon Nov 11 06:41:07 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1227,7 +1259,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libcifpp-7.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libcifpp_7.0.7-3_source.changes +I: user script /srv/workspace/pbuilder/7684/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/7684/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libcifpp-7.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libcifpp_7.0.7-3_source.changes dpkg-buildpackage: info: source package libcifpp dpkg-buildpackage: info: source version 7.0.7-3 dpkg-buildpackage: info: source distribution unstable @@ -1292,7 +1328,7 @@ -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build --- Configuring done (29.3s) +-- Configuring done (26.7s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: @@ -1310,7 +1346,7 @@ export http_proxy=127.0.0.1:9 export https_proxy=127.0.0.1:9 dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libcifpp-7.0.7 -B/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -1318,8 +1354,8 @@ make[3]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/depend make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/depend +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs/CMakeFiles/Doxygen-libcifpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/CMakeFiles/cifpp.dir/DependInfo.cmake "--color=" @@ -1328,22 +1364,24 @@ make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' [ 2%] Generating xml cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs/xml -[ 4%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/category.cpp -[ 6%] Generating xml +[ 4%] Generating xml cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs/xml -[ 9%] Generating docs -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs/Doxyfile +[ 6%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/category.cpp +[ 9%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/condition.cpp.o -MF CMakeFiles/cifpp.dir/src/condition.cpp.o.d -o CMakeFiles/cifpp.dir/src/condition.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/condition.cpp [ 11%] Generating docs cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs/Doxyfile +[ 13%] Generating docs +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/docs/Doxyfile Doxygen version used: 1.9.8 Searching for include files... Searching for example files... @@ -1400,7 +1438,8 @@ Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/io.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/pdb2cif.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/pdb2cif.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.Doxygen version used: 1.9.8 +Preprocessing /build/reproducible-path/libcifpp-7.0./build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented. +Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... @@ -1457,7 +1496,6 @@ Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/pdb2cif.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/pdb2cif.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0./build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented. 7/include/cif++/pdb/tls.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/tls.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... @@ -1554,7 +1592,115 @@ Generating code for file cif++/pdb/io.hpp... Generating code for file cif++/pdb/pdb2cif.hpp... Generating code for file cif++/pdb/tls.hpp... -Generating code for file c7/include/cif++/pdb/tls.hpp... +Generating code for file c/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. +if++/point.hpp... +Generating code for file cif++/row.hpp... +Generating code for file cif++/symmetry.hpp... +Generating code for file cif++/text.hpp... +Generating code for file cif++/utilities.hpp... +Generating code for file cif++/validate.hpp... +Generating file documentation... +Generating docs for file cif++/atom_type.hpp... +Generating docs for file cif++/category.hpp... +Generating docs for file cif++/compound.hpp... +Generating docs for file cif++/condition.hpp... +Generating docs for file cif++/datablock.hpp... +Generating docs for file cif++/file.hpp... +Generating docs for file cif++/format.hpp... +Generating docs for file cif++/forward_decl.hpp... +Generating docs for file cif++/gzio.hpp... +Generating docs for file cif++/item.hpp... +Generating docs for file cif++/iterator.hpp... +Generating docs for file cif++/matrix.hpp... +Generating docs for file cif++/model.hpp... +Generating docs for file cif++/parser.hpp... +Generating docs for file cif++/pdb.hpp... +Generating docs for file cif++/pdb/cif2pdb.hpp... +Generating docs for file cif++/pdb/io.hpp... +Generating docs for file cif++/pdb/pdb2cif.hpp... +Generating docs for file cif++/pdb/tls.hpp... +Generating docs for file cif++/point.hpp... +Generating docs for file cif++/row.hpp... +Generating docs for file cif++/symmetry.hpp... +Generating docs for file cif++/text.hpp... +Generating docs for file cif++/utilities.hpp... +Generating docs for file cif++/validate.hpp... +Generating page documentation... +Generating docs for page deprecated... +Generating group documentation... +Generating class documentation... +Generating concept documentation... +Generating module documentation... +Generating namespace documentation... +Generating docs for namespace cif +Generating docs for compound cif::atom_type_info... +Generating docs for compound cif::atom_type_traits... +Generating docs for nested compound cif::atom_type_traits::SFData... +Generating docs for compound cif::category... +Generating docs for compound cif::category_validator... +Generating docs for compound cif::cell... +Generating docs for compound cif::compound... +Generating docs for compound cif::compound_atom... +Generating docs for compound cif::compound_bond... +Generating docs for compound cif::compound_factory... +Generating docs for compound cif::compound_source... +Generating docs for compound cif::condition... +Generating docs for compound cif::conditional_iterator_proxy... +Generating docs for compound cif::crystal... +Generating docs for compound cif::datablock... +Generating docs for compound cif::duplicate_key_error... +Generating docs for compound cif::empty_type... +Generating docs for compound cif::file... +Generating docs for compound cif::fill_out_streambuf... +Generating docs for compound cif::identity_matrix... +Generating docs for compound cif::iless... +Generating docs for compound cif::item... +Generating docs for compound cif::item_alias... +Generating docs for compound cif::item_handle... +Generating docs for compound cif::item_validator... +Generating docs for compound cif::item_value... +Generating docs for compound cif::iterator_impl... +Generating docs for compound cif::iterator_impl< Category >... +Generating docs for compound cif::iterator_impl< Category, T >... +Generating docs for compound cif::iterator_proxy... +Generating docs for compound cif::key... +Generating docs for compound cif::link_validator... +Generating docs for compound cif::matrix... +Generating docs for compound cif::matrix_cofactors... +Generating docs for compound cif::matrix_expression... +Generating docs for compound cif::matrix_fixed... +Generating docs for compound cif::matrix_matrix_multiplication... +Generating docs for compound cif::matrix_scalar_multiplication... +Generating docs for compound cif::matrix_subtraction... +Generating docs for compound cif::missing_key_error... +Generating docs for compound cif::multiple_results_error... +Generating docs for compound cif::my_charconv... +Generating docs for compound cif::parse_error... +Generating docs for compound cif::parser... +Generating docs for compound cif::point_type... +Generating docs for compound cif::progress_bar... +G/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +7/include/cif++/pdb/tls.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/tls.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... @@ -1654,126 +1800,97 @@ /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. -if++/point.hpp... -Generating code for file cif++/row.hpp... -Generating code for file cif++/symmetry.hpp... -Generating code for file cif++/text.hpp... -Generating code for file cif++/utilities.hpp... -Generating code for file cif++/validate.hpp... -Generating file documentation... -Generating docs for file cif++/atom_type.hpp... -Generating docs for file cif++/category.hpp... -Generating docs for file cif++/compound.hpp... -Generating docs for file cif++/condition.hpp... -Generating docs for file cif++/datablock.hpp... -Generating docs for file cif++/file.hpp... -Generating docs for file cif++/format.hpp... -Generating docs for file cif++/forward_decl.hpp... -Generating docs for file cif++/gzio.hpp... -Generating docs for file cif++/item.hpp... -Generating docs for file cif++/iterator.hpp... -Generating docs for file cif++/matrix.hpp... -Generating docs for file cif++/model.hpp... -Generating docs for file cif++/parser.hpp... -Generating docs for file cif++/pdb.hpp... -Generating docs for file cif++/pdb/cif2pdb.hpp... -Generating docs for file cif++/pdb/io.hpp... -Generating docs for file cif++/pdb/pdb2cif.hpp... -Generating docs for file cif++/pdb/tls.hpp... -Generating docs for file cif++/point.hpp... -Generating docs for file cif++/row.hpp... -Generating docs for file cif++/symmetry.hpp... -Generating docs for file cif++/text.hpp... -Generating docs for file cif++/utilities.hpp... -Generating docs for file cif++/validate.hpp... -Generating page documentation... -Generating docs for page deprecated... -Generating group documentation... -Generating class documentation... -Generating concept documentation... -Generating module documentation... -Generating namespace documentation... -Generating docs for namespace cif -Generating docs for compound cif::atom_type_info... -Generating docs for compound cif::atom_type_traits... -Generating docs for nested compound cif::atom_type_traits::SFData... -Generating docs for compound cif::category... -Generating docs for compound cif::category_validator... -Generating docs for compound cif::cell... -Generating docs for compound cif::compound... -Generating docs for compound cif::compound_atom... -Generating docs for compound cif::compound_bond... -Generating docs for compound cif::compound_factory... -Generating docs for compound cif::compound_source... -Generating docs for compound cif::condition... -Generating docs for compound cif::conditional_iterator_proxy... -Generating docs for compound cif::crystal... -Generating docs for compound cif::datablock... -Generating docs for compound cif::duplicate_key_error... -Generating docs for compound cif::empty_type... -Generating docs for compound cif::file... -Generating docs for compound cif::fill_out_streambuf... -Generating docs for compound cif::identity_matrix... -Generating docs for compound cif::iless... -Generating docs for compound cif::item... -Generating docs for compound cif::item_alias... -Generating docs for compound cif::item_handle... -Generating docs for compound cif::item_validator... -Generating docs for compound cif::item_value... -Generating docs for compound cif::iterator_impl... -Generating docs for compound cif::iterator_impl< Category >... -Generating docs for compound cif::iterator_impl< Category, T >... -Generating docs for compound cif::iterator_proxy... -Generating docs for compound cif::key... -Generating docs for compound cif::link_validator... -Generating docs for compound cif::matrix... -Generating docs for compound cif::matrix_cofactors... -Generating docs for compound cif::matrix_expression... -Generating docs for compound cif::matrix_fixed... -Generating docs for compound cif::matrix_matrix_multiplication... -Generating docs for compound cif::matrix_scalar_multiplication... -Generating docs for compound cif::matrix_subtraction... -Generating docs for compound cif::missing_key_error... -Generating docs for compound cif::multiple_results_error... -Generating docs for compound cif::my_charconv... -Generating docs for compound cif::parse_error... -Generating docs for compound cif::parser... -Generating docs for compound cif::point_type... -Generating docs for compound cif::progress_bar... -G/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. +enerating docs for compound cif::quaternion_type... +Generating docs for compound cif::row... +Generating docs for compound cif::row_handle... +Generating docs for compound cif::row_initializer... +Generating docs for compound cif::sac_parser... +Generating docs for compound cif::space_group... +Generating docs for compound cif::spacegroup... +Generating docs for compound cif::spherical_dots... +Generating docs for compound cif::sym_op... +Generating docs for compound cif::symmetric_matrix... +Generating docs for compound cif::symmetric_matrix_fixed... +Generating docs for compound cif::symop_data... +Generating docs for compound cif::symop_datablock... +Generating docs for compound cif::transformation... +Generating docs for compound cif::type_validator... +Generating docs for compound cif::validation_category_impl... +Generating docs for compound cif::validation_exception... +Generating docs for compound cif::validator... +Generating docs for compound cif::validator_factory... +Generating docs for concept cif::Numeric... +Generating docs for compound cif::colour::detail::coloured_string_t... +Generating docs for compound cif::gzio::basic_ifstream... +Generating docs for compound cif::gzio::basic_igzip_streambuf... +Generating docs for compound cif::gzio::basic_istream... +Generating docs for compound cif::gzio::basic_ofstream... +Generating docs for compound cif::gzio::basic_ogzip_streambuf... +Generating docs for compound cif::gzio::basic_ostream... +Generating docs for compound cif::gzio::basic_streambuf... +Generating docs for compound cif::mm::atom... +Generating docs for compound cif::mm::branch... +Generating docs for compound cif::mm::monomer... +Generating docs for compound cif::mm::polymer... +Generating docs for compound cif::mm::residue... +Generating docs for compound cif::mm::structure... +Generating docs for compound cif::mm::sugar... +Generating graph info page... +Generating directory documentation... +Generating dependency graph for directory cif++/pdb +finalizing index lists... +writing tag file... +Generating XML output... +Generating XML output for class cif::mm::atom +Generating XML output for class cif::atom_type_info +Generating XML output for class cif::atom_type_traits +Generating XML output for class cif::gzio::basic_ifstream +Generating XML output for class cif::gzio::basic_igzip_streambuf +Generating XML output for class cif::gzio::basic_istream +Generating XML output for class cif::gzio::basic_ofstream +Generating XML output for class cif::gzio::basic_ogzip_streambuf +Generating XML output for class cif::gzio::basic_ostream +Generating XML output for class cif::gzio::basic_streambuf +Generating XML output for class cif::mm::branch +Generating XML output for class cif::category +Generating XML output for class cif::category_validator +Generating XML output for class cif::cell +Generating XML output for class cif::colour::detail::coloured_string_t +Generating XML output for class cif::compound +Generating XML output for class cif::compound_atom +Generating XML output for class cif::compound_bond +Generating XML output for class cif::compound_factory +Generating XML output for class cif::compound_source +Generating XML output for class cif::condition +Generating XML output for class cif::conditional_iterator_proxy +Generating XML output for class cif::crystal +Generating XML output for class cif::datablock +Generating XML output for class cif::duplicate_key_error +Generating XML output for class cif::empty_type +Generating XML output for class cif::file +Generating XML output for class cif::fill_out_streambuf +Generating XML output for class cif::identity_matrix +Generating XML output for class cif::iless +Generating XML output for class cif::item +Generating XML output for class cif::item_alias +Generating XML output for class cif::category::item_entry +Generating XML output for class cif::item_handle +Generating XML output for class cif::item_validator +Generating XML output for class cif::item_value +Generating XML output for class cif::iterator_impl +Generating XML output for class cif::iterator_impl< Category > +Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. if++/point.hpp... Generating code for file cif++/row.hpp... Generating code for file cif++/symmetry.hpp... @@ -1945,85 +2062,6 @@ Generating XML output for class cif::item_value Generating XML output for class cif::iterator_impl Generating XML output for class cif::iterator_impl< Category > -Generating XML output for class cif::iterator_impl< Caenerating docs for compound cif::quaternion_type... -Generating docs for compound cif::row... -Generating docs for compound cif::row_handle... -Generating docs for compound cif::row_initializer... -Generating docs for compound cif::sac_parser... -Generating docs for compound cif::space_group... -Generating docs for compound cif::spacegroup... -Generating docs for compound cif::spherical_dots... -Generating docs for compound cif::sym_op... -Generating docs for compound cif::symmetric_matrix... -Generating docs for compound cif::symmetric_matrix_fixed... -Generating docs for compound cif::symop_data... -Generating docs for compound cif::symop_datablock... -Generating docs for compound cif::transformation... -Generating docs for compound cif::type_validator... -Generating docs for compound cif::validation_category_impl... -Generating docs for compound cif::validation_exception... -Generating docs for compound cif::validator... -Generating docs for compound cif::validator_factory... -Generating docs for concept cif::Numeric... -Generating docs for compound cif::colour::detail::coloured_string_t... -Generating docs for compound cif::gzio::basic_ifstream... -Generating docs for compound cif::gzio::basic_igzip_streambuf... -Generating docs for compound cif::gzio::basic_istream... -Generating docs for compound cif::gzio::basic_ofstream... -Generating docs for compound cif::gzio::basic_ogzip_streambuf... -Generating docs for compound cif::gzio::basic_ostream... -Generating docs for compound cif::gzio::basic_streambuf... -Generating docs for compound cif::mm::atom... -Generating docs for compound cif::mm::branch... -Generating docs for compound cif::mm::monomer... -Generating docs for compound cif::mm::polymer... -Generating docs for compound cif::mm::residue... -Generating docs for compound cif::mm::structure... -Generating docs for compound cif::mm::sugar... -Generating graph info page... -Generating directory documentation... -Generating dependency graph for directory cif++/pdb -finalizing index lists... -writing tag file... -Generating XML output... -Generating XML output for class cif::mm::atom -Generating XML output for class cif::atom_type_info -Generating XML output for class cif::atom_type_traits -Generating XML output for class cif::gzio::basic_ifstream -Generating XML output for class cif::gzio::basic_igzip_streambuf -Generating XML output for class cif::gzio::basic_istream -Generating XML output for class cif::gzio::basic_ofstream -Generating XML output for class cif::gzio::basic_ogzip_streambuf -Generating XML output for class cif::gzio::basic_ostream -Generating XML output for class cif::gzio::basic_streambuf -Generating XML output for class cif::mm::branch -Generating XML output for class cif::category -Generating XML output for class cif::category_validator -Generating XML output for class cif::cell -Generating XML output for class cif::colour::detail::coloured_string_t -Generating XML output for class cif::compound -Generating XML output for class cif::compound_atom -Generating XML output for class cif::compound_bond -Generating XML output for class cif::compound_factory -Generating XML output for class cif::compound_source -Generating XML output for class cif::condition -Generating XML output for class cif::conditional_iterator_proxy -Generating XML output for class cif::crystal -Generating XML output for class cif::datablock -Generating XML output for class cif::duplicate_key_error -Generating XML output for class cif::empty_type -Generating XML output for class cif::file -Generating XML output for class cif::fill_out_streambuf -Generating XML output for class cif::identity_matrix -Generating XML output for class cif::iless -Generating XML output for class cif::item -Generating XML output for class cif::item_alias -Generating XML output for class cif::category::item_entry -Generating XML output for class cif::item_handle -Generating XML output for class cif::item_validator -Generating XML output for class cif::item_value -Generating XML output for class cif::iterator_impl -Generating XML output for class cif::iterator_impl< Category > Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: parameter 'pdbx_file' @@ -2141,9 +2179,6 @@ symbol lookup cache used 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tegory, T > Generating XML output for class cif::iterator_proxy Generating XML output for class cif::key @@ -2236,31 +2271,40 @@ type lookup cache used 4688/65536 hits=49233 misses=4934 symbol lookup cache used 5033/65536 hits=61776 misses=5033 finished... -[ 15%] Generating documentation with Sphinx +[ 13%] Built target Doxygen-libcifpp +[ 15%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT 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[ 0%] api/classcif_1_1atom__type__traits -[ 20%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -MF CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/dictionary_parser.cpp -[ 22%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/file.cpp.o -MF CMakeFiles/cifpp.dir/src/file.cpp.o.d -o CMakeFiles/cifpp.dir/src/file.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/file.cpp +[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/item.cpp.o -MF CMakeFiles/cifpp.dir/src/item.cpp.o.d -o CMakeFiles/cifpp.dir/src/item.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/item.cpp +[ 27%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/parser.cpp.o -MF CMakeFiles/cifpp.dir/src/parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/parser.cpp reading sources... [ 1%] api/classcif_1_1category +[ 29%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/row.cpp.o -MF CMakeFiles/cifpp.dir/src/row.cpp.o.d -o CMakeFiles/cifpp.dir/src/row.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/row.cpp +[ 31%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/validate.cpp.o -MF CMakeFiles/cifpp.dir/src/validate.cpp.o.d -o CMakeFiles/cifpp.dir/src/validate.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/validate.cpp reading sources... [ 1%] api/classcif_1_1cell reading sources... [ 1%] api/classcif_1_1compound reading sources... [ 2%] api/classcif_1_1compound__factory @@ -2294,10 +2338,10 @@ reading sources... [ 10%] api/classcif_1_1matrix__subtraction reading sources... [ 10%] api/classcif_1_1missing__key__error reading sources... [ 11%] api/classcif_1_1mm_1_1atom +[ 34%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/text.cpp.o -MF CMakeFiles/cifpp.dir/src/text.cpp.o.d -o CMakeFiles/cifpp.dir/src/text.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/text.cpp reading sources... [ 11%] api/classcif_1_1mm_1_1branch reading sources... [ 11%] api/classcif_1_1mm_1_1monomer -[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/item.cpp.o -MF CMakeFiles/cifpp.dir/src/item.cpp.o.d -o CMakeFiles/cifpp.dir/src/item.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/item.cpp reading sources... [ 11%] api/classcif_1_1mm_1_1polymer reading sources... [ 12%] api/classcif_1_1mm_1_1residue reading sources... [ 12%] api/classcif_1_1mm_1_1structure @@ -2316,8 +2360,6 @@ reading sources... [ 16%] api/classcif_1_1symmetric__matrix reading sources... [ 16%] api/classcif_1_1symmetric__matrix__fixed reading sources... [ 17%] api/classcif_1_1transformation -[ 27%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/parser.cpp.o -MF CMakeFiles/cifpp.dir/src/parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/parser.cpp reading sources... [ 17%] api/classcif_1_1validation__category__impl reading sources... [ 17%] api/classcif_1_1validation__exception reading sources... [ 17%] api/classcif_1_1validator @@ -2336,7 +2378,9 @@ reading sources... [ 21%] api/enum_namespacecif_1a339253d4b856d267db110e2e55b6fa46 reading sources... [ 22%] api/enum_namespacecif_1a636b6271c6af17a0d73dbe4557061c03 reading sources... [ 22%] api/enum_namespacecif_1a6e1d07f3689961d3ec0d1e7cbfeefc6f +[ 36%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o reading sources... 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[ 25%] api/file_cif++_compound.hpp +[ 38%] Building CXX object CMakeFiles/cifpp.dir/src/atom_type.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/atom_type.cpp.o -MF CMakeFiles/cifpp.dir/src/atom_type.cpp.o.d -o CMakeFiles/cifpp.dir/src/atom_type.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/atom_type.cpp reading sources... [ 26%] api/file_cif++_condition.hpp reading sources... [ 26%] api/file_cif++_datablock.hpp reading sources... [ 26%] api/file_cif++_dictionary_parser.hpp @@ -2375,9 +2421,7 @@ reading sources... [ 33%] api/function_model_8hpp_1a9bb5822efb054c2979a666d9bfc0913d reading sources... [ 33%] api/function_model_8hpp_1aa8d7a4613d7166fe2e43c36894cbd1e7 reading sources... [ 34%] api/function_model_8hpp_1aaaea875b497445410924763ba322f0f4 -[ 29%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o reading sources... [ 34%] api/function_model_8hpp_1ab82fb33002132ca78f0f0de0855a9883 -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/row.cpp.o -MF CMakeFiles/cifpp.dir/src/row.cpp.o.d -o CMakeFiles/cifpp.dir/src/row.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/row.cpp reading sources... [ 34%] api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e reading sources... [ 35%] api/function_namespacecif_1a02741e5ba23265cacfda366089d13f00 reading sources... [ 35%] api/function_namespacecif_1a04692e2c6a26c3dd823891c93aa68c46 @@ -2451,10 +2495,6 @@ reading sources... [ 55%] api/function_namespacecif_1a9ef12a84362871f9b37c36d526dcdc87 reading sources... [ 56%] api/function_namespacecif_1aa0722da1df2e70c4c68cb1e512978cae reading sources... [ 56%] api/function_namespacecif_1aa629e0bd1ddd07f3ffd7bde1bf0bf0fb -[ 31%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/validate.cpp.o -MF CMakeFiles/cifpp.dir/src/validate.cpp.o.d -o CMakeFiles/cifpp.dir/src/validate.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/validate.cpp -[ 34%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/text.cpp.o -MF CMakeFiles/cifpp.dir/src/text.cpp.o.d -o CMakeFiles/cifpp.dir/src/text.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/text.cpp reading sources... [ 56%] api/function_namespacecif_1aa697ec53ac311721d137e96508fe6268 reading sources... [ 57%] api/function_namespacecif_1aae2f02104c912443c2f40b2647803ccb reading sources... [ 57%] api/function_namespacecif_1aaede7d3ae547f8c18450a83b6bcc42e2 @@ -2482,7 +2522,11 @@ reading sources... [ 64%] api/function_namespacecif_1ad8a62060b4918e8fcdba571adcde4295 reading sources... [ 64%] api/function_namespacecif_1adecaf77ddb0b38da346fecf70b5df2e0 reading sources... [ 64%] api/function_namespacecif_1ae025ebbaf906da6b0e66d3fa6657c536 +[ 40%] Building CXX object CMakeFiles/cifpp.dir/src/compound.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/compound.cpp.o -MF CMakeFiles/cifpp.dir/src/compound.cpp.o.d -o CMakeFiles/cifpp.dir/src/compound.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/compound.cpp reading sources... [ 64%] api/function_namespacecif_1ae07f25a3d33d06b0128d157360949285 +[ 43%] Building CXX object CMakeFiles/cifpp.dir/src/point.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/point.cpp.o -MF CMakeFiles/cifpp.dir/src/point.cpp.o.d -o CMakeFiles/cifpp.dir/src/point.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/point.cpp reading sources... [ 65%] api/function_namespacecif_1ae338b65793c18872e8bcdfe6a534c83b reading sources... [ 65%] api/function_namespacecif_1ae8f1330ded658c851bda5859f2e071bc reading sources... [ 65%] api/function_namespacecif_1aeb2069c34c7d86acc4418d3740adf5d8 @@ -2507,8 +2551,8 @@ reading sources... [ 71%] api/function_pdb_8hpp_1ac681cb3a6237bc71dcba0e88fb1c0832 reading sources... [ 71%] api/function_symmetry_8hpp_1a5a53cac9d72c839c804fd7619f764d67 reading sources... [ 72%] api/library_root -[ 36%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/utilities.cpp.o -MF CMakeFiles/cifpp.dir/src/utilities.cpp.o.d -o CMakeFiles/cifpp.dir/src/utilities.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/utilities.cpp +[ 45%] Building CXX object CMakeFiles/cifpp.dir/src/symmetry.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/symmetry.cpp.o -MF CMakeFiles/cifpp.dir/src/symmetry.cpp.o.d -o CMakeFiles/cifpp.dir/src/symmetry.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/symmetry.cpp reading sources... [ 72%] api/namespace_cif reading sources... [ 72%] api/namespace_cif__colour reading sources... [ 73%] api/namespace_cif__colour__detail @@ -2673,7 +2717,9 @@ /build/reproducible-path/libcifpp-7.0.7/docs/basics.rst:343: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/libcifpp-7.0.7/docs/symmetry.rst:37: WARNING: Explicit markup ends without a blank line; unexpected unindent. looking for now-outdated files... none found -pickling environment... done +pickling environment... [ 47%] Building CXX object CMakeFiles/cifpp.dir/src/model.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/model.cpp.o -MF CMakeFiles/cifpp.dir/src/model.cpp.o.d -o CMakeFiles/cifpp.dir/src/model.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/model.cpp +done checking consistency... done preparing documents... done copying assets... @@ -2697,8 +2743,6 @@ writing output... [ 5%] api/classcif_1_1gzio_1_1basic__igzip__streambuf writing output... [ 5%] api/classcif_1_1gzio_1_1basic__istream writing output... [ 5%] api/classcif_1_1gzio_1_1basic__ofstream -[ 38%] Building CXX object CMakeFiles/cifpp.dir/src/atom_type.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/atom_type.cpp.o -MF CMakeFiles/cifpp.dir/src/atom_type.cpp.o.d -o CMakeFiles/cifpp.dir/src/atom_type.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/atom_type.cpp writing output... [ 5%] api/classcif_1_1gzio_1_1basic__ogzip__streambuf writing output... [ 6%] api/classcif_1_1gzio_1_1basic__ostream writing output... [ 6%] api/classcif_1_1gzio_1_1basic__streambuf @@ -2734,6 +2778,8 @@ writing output... [ 15%] api/classcif_1_1sac__parser writing output... [ 15%] api/classcif_1_1spacegroup writing output... [ 16%] api/classcif_1_1spherical__dots +[ 50%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/cif2pdb.cpp writing output... [ 16%] api/classcif_1_1symmetric__matrix writing output... [ 16%] api/classcif_1_1symmetric__matrix__fixed writing output... [ 17%] api/classcif_1_1transformation @@ -2754,8 +2800,6 @@ writing output... [ 21%] api/enum_namespacecif_1a22f8e0bb538e176ebddfe89c7ef03a6d writing output... [ 21%] api/enum_namespacecif_1a339253d4b856d267db110e2e55b6fa46 writing output... [ 22%] api/enum_namespacecif_1a636b6271c6af17a0d73dbe4557061c03 -[ 40%] Building CXX object CMakeFiles/cifpp.dir/src/compound.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/compound.cpp.o -MF CMakeFiles/cifpp.dir/src/compound.cpp.o.d -o CMakeFiles/cifpp.dir/src/compound.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/compound.cpp writing output... [ 22%] api/enum_namespacecif_1a6e1d07f3689961d3ec0d1e7cbfeefc6f writing output... [ 22%] api/enum_namespacecif_1a701ee5c69b8bf4a14c0807d32581e87d writing output... [ 23%] api/enum_namespacecif_1a9579bd6dc036aa07dcb73e9724cd4f54 @@ -2816,8 +2860,6 @@ writing output... [ 39%] api/function_namespacecif_1a2190ac2315339dabb5be80f2a8634e29 writing output... [ 39%] api/function_namespacecif_1a26cac7b3c044dff1bdcac52425e775f9 writing output... [ 40%] api/function_namespacecif_1a27048ca516d6ab9d61b330b3ae27b37f -[ 43%] Building CXX object CMakeFiles/cifpp.dir/src/point.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/point.cpp.o -MF CMakeFiles/cifpp.dir/src/point.cpp.o.d -o CMakeFiles/cifpp.dir/src/point.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/point.cpp writing output... [ 40%] api/function_namespacecif_1a277d04e4939dd9a5167dc90c21c00266 writing output... [ 40%] api/function_namespacecif_1a28d3d6db55465d265cb5b6a7a7d93a6b writing output... [ 41%] api/function_namespacecif_1a2996a300e6f91f05abb11706b3c3cef2 @@ -2852,8 +2894,6 @@ writing output... [ 49%] api/function_namespacecif_1a75df878566a514b909141bad937280f4 writing output... [ 50%] api/function_namespacecif_1a7b0b6dec945a1157aa9d455fd35494df writing output... [ 50%] api/function_namespacecif_1a7da448991e41eef2fa6dbf113827f958 -[ 45%] Building CXX object CMakeFiles/cifpp.dir/src/symmetry.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/symmetry.cpp.o -MF CMakeFiles/cifpp.dir/src/symmetry.cpp.o.d -o CMakeFiles/cifpp.dir/src/symmetry.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/symmetry.cpp writing output... [ 50%] api/function_namespacecif_1a8250f4461c4b297082270bc37e532b88 writing output... [ 51%] api/function_namespacecif_1a867dc9c21324a3e65a931bb4d7160a9e writing output... [ 51%] api/function_namespacecif_1a86caa43dc2def46857ab3eb037b63f2b @@ -2913,8 +2953,6 @@ writing output... [ 67%] api/function_pdb_8hpp_1a0cdfe208e415aa2b34e1277e5de112cb writing output... [ 67%] api/function_pdb_8hpp_1a0d8dcb296d80df362a6d47d62b9e01c9 writing output... [ 68%] api/function_pdb_8hpp_1a3beb1e1704887c34c3ffcf62ba4c93a2 -[ 47%] Building CXX object CMakeFiles/cifpp.dir/src/model.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/model.cpp.o -MF CMakeFiles/cifpp.dir/src/model.cpp.o.d -o CMakeFiles/cifpp.dir/src/model.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/model.cpp writing output... [ 68%] api/function_pdb_8hpp_1a429736e305a06f11b86700d76f8b1ac3 writing output... [ 68%] api/function_pdb_8hpp_1a5f015134e46f13c6ef9eb9ed84b66d1a writing output... [ 69%] api/function_pdb_8hpp_1a631597613cf60653370f704184d3b9d7 @@ -2947,9 +2985,13 @@ writing output... [ 77%] api/program_listing_file_cif++_exports.hpp writing output... [ 77%] api/program_listing_file_cif++_file.hpp writing output... [ 77%] api/program_listing_file_cif++_format.hpp +[ 52%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif.cpp writing output... [ 78%] api/program_listing_file_cif++_forward_decl.hpp writing output... [ 78%] api/program_listing_file_cif++_gzio.hpp writing output... [ 78%] api/program_listing_file_cif++_item.hpp +[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif_remark_3.cpp writing output... [ 79%] api/program_listing_file_cif++_iterator.hpp writing output... [ 79%] api/program_listing_file_cif++_matrix.hpp writing output... [ 79%] api/program_listing_file_cif++_model.hpp @@ -3042,15 +3084,11 @@ The HTML pages are in sphinx. make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 47%] Built target Sphinx-libcifpp -[ 50%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/cif2pdb.cpp -[ 52%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif.cpp -[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif_remark_3.cpp +[ 54%] Built target Sphinx-libcifpp [ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp +[ 59%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/validate-pdbx.cpp In file included from /usr/include/c++/14/string:42, from /usr/include/c++/14/stdexcept:39, from /usr/include/c++/14/system_error:43, @@ -3070,8 +3108,6 @@ /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:780:30: note: ‘letter_can’ was declared here 780 | char letter_can; | ^~~~~~~~~~ -[ 59%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/validate-pdbx.cpp [ 61%] Linking CXX shared library libcifpp.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cifpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcifpp.so.7.0 -o libcifpp.so.7.0.7 CMakeFiles/cifpp.dir/src/category.cpp.o CMakeFiles/cifpp.dir/src/condition.cpp.o CMakeFiles/cifpp.dir/src/datablock.cpp.o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o CMakeFiles/cifpp.dir/src/file.cpp.o CMakeFiles/cifpp.dir/src/item.cpp.o CMakeFiles/cifpp.dir/src/parser.cpp.o CMakeFiles/cifpp.dir/src/row.cpp.o CMakeFiles/cifpp.dir/src/validate.cpp.o CMakeFiles/cifpp.dir/src/text.cpp.o CMakeFiles/cifpp.dir/src/utilities.cpp.o CMakeFiles/cifpp.dir/src/atom_type.cpp.o CMakeFiles/cifpp.dir/src/compound.cpp.o CMakeFiles/cifpp.dir/src/point.cpp.o CMakeFiles/cifpp.dir/src/symmetry.cpp.o CMakeFiles/cifpp.dir/src/model.cpp.o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o "CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o" /usr/lib/arm-linux-gnueabihf/libz.so @@ -3091,116 +3127,116 @@ make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/depend make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/depend make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/unit-v2-test.dir/DependInfo.cmake "--color=" +make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/unit-3d-test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/unit-v2-test.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/format-test.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/model-test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/build make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 70%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -[ 70%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o -[ 70%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o +[ 65%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -MF CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o.d -o CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/unit-v2-test.cpp +[ 68%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/format-test.dir/format-test.cpp.o -MF CMakeFiles/format-test.dir/format-test.cpp.o.d -o CMakeFiles/format-test.dir/format-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/format-test.cpp +[ 70%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -MF CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o.d -o CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/unit-3d-test.cpp -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -MF CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o.d -o CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/unit-v2-test.cpp -[ 72%] Linking CXX executable format-test +[ 72%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/model-test.dir/model-test.cpp.o -MF CMakeFiles/model-test.dir/model-test.cpp.o.d -o CMakeFiles/model-test.dir/model-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/model-test.cpp +[ 75%] Linking CXX executable format-test cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/format-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/format-test.dir/format-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o format-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 72%] Built target format-test -make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/model-test.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 75%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/model-test.dir/model-test.cpp.o -MF CMakeFiles/model-test.dir/model-test.cpp.o.d -o CMakeFiles/model-test.dir/model-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/model-test.cpp -[ 77%] Linking CXX executable model-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/model-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/model-test.dir/model-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o model-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 77%] Built target model-test +[ 75%] Built target format-test make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/rename-compound-test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 79%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o +[ 77%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -MF CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o.d -o CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/rename-compound-test.cpp -[ 81%] Linking CXX executable rename-compound-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/rename-compound-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so +[ 79%] Linking CXX executable model-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/model-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/model-test.dir/model-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o model-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 81%] Built target rename-compound-test +[ 79%] Built target model-test make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/sugar-test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 84%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o +[ 81%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/sugar-test.cpp -[ 86%] Linking CXX executable unit-v2-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit-v2-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o unit-v2-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so +[ 84%] Linking CXX executable rename-compound-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/rename-compound-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 86%] Built target unit-v2-test +[ 84%] Built target rename-compound-test make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/spinner-test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 88%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o +[ 86%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/spinner-test.cpp -[ 90%] Linking CXX executable sugar-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so +[ 88%] Linking CXX executable spinner-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/spinner-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/spinner-test.dir/spinner-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o spinner-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 90%] Built target sugar-test +[ 88%] Built target spinner-test make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 93%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o +[ 90%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -MF CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o.d -o CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/validate-pdbx-test.cpp -[ 95%] Linking CXX executable spinner-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/spinner-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/spinner-test.dir/spinner-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o spinner-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so -[ 97%] Linking CXX executable unit-3d-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit-3d-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o unit-3d-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 97%] Built target spinner-test +[ 93%] Linking CXX executable sugar-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[ 97%] Built target unit-3d-test -[100%] Linking CXX executable validate-pdbx-test +[ 93%] Built target sugar-test +[ 95%] Linking CXX executable validate-pdbx-test cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate-pdbx-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o validate-pdbx-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' -[100%] Built target validate-pdbx-test +[ 95%] Built target validate-pdbx-test +[ 97%] Linking CXX executable unit-v2-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit-v2-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o unit-v2-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +[ 97%] Built target unit-v2-test +[100%] Linking CXX executable unit-3d-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit-3d-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o unit-3d-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' +[100%] Built target unit-3d-test make[3]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7' dh_auto_test - cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 + cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j3 +/usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/DartConfiguration.tcl @@ -3230,7 +3266,13 @@ 3: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/format-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" 3: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test 3: Test timeout computed to be: 1500 -3: Randomness seeded to: 1506445831 +test 4 + Start 4: model-test + +4: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/model-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" +4: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test +4: Test timeout computed to be: 1500 +3: Randomness seeded to: 3680953263 3: Hello, world! 3: Hello, world! 3: Hello, world! @@ -3241,19 +3283,34 @@ 3: =============================================================================== 3: All tests passed (2 assertions in 2 test cases) 3: -1/8 Test #3: format-test ...................... Passed 0.01 sec -test 4 - Start 4: model-test +1/8 Test #3: format-test ...................... Passed 0.02 sec +test 5 + Start 5: rename-compound-test -4: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/model-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" -4: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test -4: Test timeout computed to be: 1500 -1: Randomness seeded to: 3760305111 +5: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/rename-compound-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" +5: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test +5: Test timeout computed to be: 1500 +1: Randomness seeded to: 1344670280 1: warning: no child to parent links were found for child cat_1 and parent cat_3 1: Error parsing mmCIF: This file does not seem to be an mmCIF file -4: Randomness seeded to: 1474094832 +5: Randomness seeded to: 1657628663 +5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary +5: choosing N +4: Randomness seeded to: 507313459 4: Warning: no atoms loaded 4: Warning: no atoms loaded +4: =============================================================================== +4: All tests passed (8500 assertions in 6 test cases) +4: +2/8 Test #4: model-test ....................... Passed 0.97 sec +test 6 + Start 6: sugar-test + +6: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/sugar-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" +6: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test +6: Test timeout computed to be: 1500 +5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary +5: choosing N 1: Adding mandatory item conn_type_id to category struct_conn 1: Adding mandatory item ptnr1_label_asym_id to category struct_conn 1: Adding mandatory item ptnr1_label_comp_id to category struct_conn @@ -3296,31 +3353,6 @@ 1: The following named resources were loaded: 1: components.cif -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/ccd-subset.cif" 1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/mmcif_pdbx.dic" -4: =============================================================================== -4: All tests passed (8500 assertions in 6 test cases) -4: -2/8 Test #4: model-test ....................... Passed 0.77 sec -test 5 - Start 5: rename-compound-test - -5: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/rename-compound-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" -5: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test -5: Test timeout computed to be: 1500 -5: Randomness seeded to: 1442287243 -5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary -5: choosing N -1: Choosing X-PLOR version '' as refinement program. Score = 1 -1: Adding mandatory item value to category pdbx_struct_assembly_prop -1: Adding mandatory item conn_type_id to category struct_conn -1: Adding mandatory item ptnr1_label_asym_id to category struct_conn -1: Adding mandatory item ptnr1_label_comp_id to category struct_conn -1: Adding mandatory item ptnr1_label_seq_id to category struct_conn -1: Adding mandatory item ptnr2_label_asym_id to category struct_conn -1: Adding mandatory item ptnr2_label_comp_id to category struct_conn -1: Adding mandatory item ptnr2_label_seq_id to category struct_conn -1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme -5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary -5: choosing N 5: Creating component index ... done 5: Loading component RXA... done 5: Will not rename in child category since there are already rows that link to the parent @@ -5640,16 +5672,6 @@ 5: _pdbx_struct_sheet_hbond.range_2_auth_seq_id 5: A 1 2 O PHE A 65 ? O PHE A 65 N PHE A 50 ? N PHE A 50 5: A 2 3 N SER A 55 ? N SER A 55 O ALA A 40 ? O ALA A 40 -1: =============================================================================== -1: All tests passed (100465 assertions in 51 test cases) -1: -3/8 Test #1: unit-v2-test ..................... Passed 1.43 sec -test 6 - Start 6: sugar-test - -6: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/sugar-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" -6: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test -6: Test timeout computed to be: 1500 5: A 3 4 N ILE A 43 ? N ILE A 43 O GLY A 5 ? O GLY A 5 5: A 4 5 N GLU A 13 ? N GLU A 13 O THR A 131 ? O THR A 131 5: A 5 6 N TYR A 134 ? N TYR A 134 O LEU A 119 ? O LEU A 119 @@ -7992,47 +8014,61 @@ 5: test cases: 1 | 1 passed 5: assertions: - none - 5: -4/8 Test #5: rename-compound-test ............. Passed 0.82 sec +1: Choosing X-PLOR version '' as refinement program. Score = 1 +3/8 Test #5: rename-compound-test ............. Passed 1.83 sec test 7 Start 7: spinner-test 7: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/spinner-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" 7: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test 7: Test timeout computed to be: 1500 -2: Randomness seeded to: 562577681 -2: (1.70711,1.70711,0) -2: =============================================================================== -2: All tests passed (5099624 assertions in 15 test cases) -2: -5/8 Test #2: unit-3d-test ..................... Passed 6.24 sec +1: Adding mandatory item value to category pdbx_struct_assembly_prop +1: Adding mandatory item conn_type_id to category struct_conn +1: Adding mandatory item ptnr1_label_asym_id to category struct_conn +1: Adding mandatory item ptnr1_label_comp_id to category struct_conn +1: Adding mandatory item ptnr1_label_seq_id to category struct_conn +1: Adding mandatory item ptnr2_label_asym_id to category struct_conn +1: Adding mandatory item ptnr2_label_comp_id to category struct_conn +1: Adding mandatory item ptnr2_label_seq_id to category struct_conn +1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme +1: =============================================================================== +1: All tests passed (100465 assertions in 51 test cases) +1: +4/8 Test #1: unit-v2-test ..................... Passed 2.21 sec test 8 Start 8: validate-pdbx-test 8: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test/validate-pdbx-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" 8: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf/test 8: Test timeout computed to be: 1500 -8: Randomness seeded to: 146598412 +8: Randomness seeded to: 394902802 8: =============================================================================== 8: All tests passed (15 assertions in 1 test case) 8: -6/8 Test #8: validate-pdbx-test ............... Passed 0.52 sec -7: Randomness seeded to: 4083237072 +5/8 Test #8: validate-pdbx-test ............... Passed 0.65 sec +2: Randomness seeded to: 2463090883 +2: (1.70711,1.70711,0) +2: =============================================================================== +2: All tests passed (5099624 assertions in 15 test cases) +2: +6/8 Test #2: unit-3d-test ..................... Passed 6.86 sec +7: Randomness seeded to: 1184897046 7: =============================================================================== 7: test cases: 3 | 3 passed 7: assertions: - none - 7: -7/8 Test #7: spinner-test ..................... Passed 6.24 sec -6: Randomness seeded to: 3802374810 +7/8 Test #7: spinner-test ..................... Passed 5.73 sec +6: Randomness seeded to: 3333827325 6: =============================================================================== 6: All tests passed (10 assertions in 2 test cases) 6: -8/8 Test #6: sugar-test ....................... Passed 17.79 sec +8/8 Test #6: sugar-test ....................... Passed 18.29 sec 100% tests passed, 0 tests failed out of 8 -Total Test time (real) = 19.23 sec +Total Test time (real) = 19.28 sec make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' - rm -fr -- /tmp/dh-xdg-rundir-wR5LF6PX + rm -fr -- /tmp/dh-xdg-rundir-odWEknwt create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/libcifpp-dev.substvars debian/libcifpp-doc.substvars debian/libcifpp7.substvars debian/libcifpp-data.substvars @@ -8041,7 +8077,7 @@ install -m0755 -d debian/libcifpp-data/etc/libcifpp/cache-update.d dh_auto_install install -m0755 -d /build/reproducible-path/libcifpp-7.0.7/debian/tmp - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/libcifpp-7.0.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/libcifpp-7.0.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libcifpp-7.0.7 -B/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -8094,710 +8130,710 @@ A configuration file has been written to /etc/libcifpp.conf, please edit this file to enable automatic updates -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/etc/libcifpp/cache-update.d -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl_3_01Category_01_4.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1bf743b12f5bba28eab81d100fa6be6f.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae338b65793c18872e8bcdfe6a534c83b.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__cofactors.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a5c256bdffd9190e69c087e64b69d786d.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a34c1ecdfe0e74030d387cc4e3db0f20d.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4c27e27d4cb70a2e13cf2efb05ccd325.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a22f8e0bb538e176ebddfe89c7ef03a6d.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a91dadafdbe6019e5215f9992dc67ca4c.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1key.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1row__initializer.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_category.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1spacegroup.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a89a5f58c129d13c01bd68e91d4a0c7a1.html --- Installing: 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+-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1matrix__cofactors.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_point.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a302fdd5a6fea6ea6a874f4e635bd43e3.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_pdb_8hpp_1a0ca52e86fd5c866cb07ee1d2bd6e0be6.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ab9c1b63f260c9ccc3740971d6ca755c7.rst.txt --- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_utilities.hpp.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1gzio_1_1basic__igzip__streambuf.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/file_cif++_forward_decl.hpp.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a57a7530364c9dfa84f8607824e6d70e3.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a07568e2424a8b9f3d87c0e7b506f01c8.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1aa0722da1df2e70c4c68cb1e512978cae.rst.txt +-- Installing: 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--- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/symmetry.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/compound.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/index.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1row__handle.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ac3d9a984c107208b0abbabe5f9e05289.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/minus.png --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/doctools.js --- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/badge_only.css --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/theme.css --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/sphinx_highlight.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/language_data.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/searchtools.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/file.png -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot --- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/documentation_options.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/language_data.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/pygments.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/theme.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/badge_only.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/minus.png +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/searchtools.js +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a3f5264d06e1b2326aadfae8b3b114414.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1ae5e65dddeeceb84cd55b772eaca216c7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl_3_01Category_01_4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1structure.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_point.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1ab059fcaf3572f71d81e93484789bc0e0.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__gzio.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a335e9db77e4d400afe98317a0da325f9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1cell.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_condition.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1compound__atom.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_utilities.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_datablock.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1row__handle.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad0c5beb6c8ad7621c2ec415432b33c48.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a9ebb6f223c638daee2bc1bf285be72c8.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a65ac1856b4a8a6675e6a0f0d9b5edfaa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1branch.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_cif2pdb.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac0219abe114a15fecf35b9305c6a51b9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab80f7d084a897f8654fecdcbe4c598ba.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1sugar.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_utilities.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1aab9ff10a498bf7bb72ce703e00c6551c.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1colour_1_1detail_1_1coloured__string__t.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__cofactors.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a878fb88f8eb9b8c5bde4ed2616dca237.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a57a7530364c9dfa84f8607824e6d70e3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1file.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7555a1d6c76bc1cef206fab9a8d67fad.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0e173ffb184bab07d483866b6f2f7274.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1residue.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1transformation.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1monomer.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a4d1e6f19e4404091efa6d14e14654e63.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1ac0cd49271cfb2fd68933871ab34217d6.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2a94aaedfb605f4e6a403e8790ee4cfd.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a86caa43dc2def46857ab3eb037b63f2b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a481dab6db30774c8562d83bb5182cc7b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_model.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad8a62060b4918e8fcdba571adcde4295.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_validate.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1type__validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__fixed.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a674345a2d0fb9af13bea9c833076cec0.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a643804a021f65a34aa75f121f3023104.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a17188febf04153361cad42eb042da64a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a5a94d01c3d87fb157ae322b347129e56.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1sac__parser.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1spacegroup.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl_3_01Category_00_01T_01_4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1atom__type__traits_1_1SFData.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_compound.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab173f10abbd57122dbfd669f30af5509.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_category.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_row.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7da448991e41eef2fa6dbf113827f958.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_text.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1ae5965db5577f7f70118a5d976232d966.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_validate.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a0ca52e86fd5c866cb07ee1d2bd6e0be6.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__matrix__multiplication.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a490147eab255051c58bc3d7d16471e17.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a9347107ebb4ef72dca122c3285453c4f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a15ce5665ae421c0a3db9fac68c149836.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac0f43cdcc8b1ba95aae5fa92f623993d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9ef12a84362871f9b37c36d526dcdc87.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_utilities_8hpp_1ae2fe1725bb5e9823d089c46b9ed5266e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ifstream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a449c5d43d72a9779d3338c2882d13e36.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1aaaea875b497445410924763ba322f0f4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad6daf4b6c782edbfeb0236e71f9e6ae1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1identity__matrix.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1polymer.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1aeffd144259eee54425fd70df1a4c119a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2db5caf5ac5cd4376f29255fa9eebbc0.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acc9c4c9512361698933ffd748de9840d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a10ff1c475902516ebcd1cf4059ac513b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1link__validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validation__category__impl.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a2ac4506e2b83a34ec6cc15a024f9b677.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_format.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a8dcfa853b7f2c8b6dcc921d0c646ab46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_exports.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a6e1d07f3689961d3ec0d1e7cbfeefc6f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a584b8865c9038c4eeba40de7d4a9f1aa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1a9bb5822efb054c2979a666d9bfc0913d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a1c4c3a9495336c603c5f3d7f77f4dc64.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a75df878566a514b909141bad937280f4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a74bfe90596358d194adfab0eb0054b79.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_atom_type.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_condition.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a6085af7e2c3294d3d5520e387757e8dd.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1aaca06426423d3d411d330b53965e1b2d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0f6dd8dc18df398b116c0c2343c2cfee.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_symmetry.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a28d3d6db55465d265cb5b6a7a7d93a6b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7b0b6dec945a1157aa9d455fd35494df.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__value.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_forward_decl.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_category.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a04692e2c6a26c3dd823891c93aa68c46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a701ee5c69b8bf4a14c0807d32581e87d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1aee0d4f8adeaf464b4201156efbb97f73.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_row.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1progress__bar.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1aa57fd6d1c296ee70c9784fc59382d7c1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1compound__source.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae8f1330ded658c851bda5859f2e071bc.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8c495f22c9ff90161b1ae539552e02aa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1parser.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac4c468df4c799fd242842a86e523bc3e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a91dadafdbe6019e5215f9992dc67ca4c.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a0cdfe208e415aa2b34e1277e5de112cb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/page_deprecated.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1spherical__dots.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_point.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0cf4d792e3cf8fb29aa18b8c585b1426.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_gzio.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2b6f06460cea1b44770b316c8c5d4b06.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1parse__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae025ebbaf906da6b0e66d3fa6657c536.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1my__charconv.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__colour__detail.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1crystal.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_gzio_8hpp_1a1cc3c9e961807f24cc997b0fdfbe76a6.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a429736e305a06f11b86700d76f8b1ac3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab9c1b63f260c9ccc3740971d6ca755c7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a39ae1da888a5c8a6ee7f1438b78b7734.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a6dacacf91cee6e2c246a2334f0fbd607.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validator__factory.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_parser.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a27048ca516d6ab9d61b330b3ae27b37f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_matrix.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1compound.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_pdb2cif.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_io.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_utilities_8hpp_1a8fd997c36131df71885f44abf2297523.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__istream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae07f25a3d33d06b0128d157360949285.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8f9736ac0d35666ef1a68f02705b8507.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abce4bb85397326d1c0a079f43048fa18.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1fill__out__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1iless.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a89f948a7392e875f87012ca961060cb3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1atom.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab97c8f7af37ad32ee1e96218eef8e0e1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2996a300e6f91f05abb11706b3c3cef2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_compound.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1item.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab91dfb39e9ee43942c5d384f161b97f3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acb24b83a370551b91948baf851bc3ba4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a339253d4b856d267db110e2e55b6fa46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__proxy.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4da118af7b65801fd61c48356e67e4a1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1condition.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa0722da1df2e70c4c68cb1e512978cae.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2e9af2d268ca7932d3b5df430dfabfe7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_io.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_matrix.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad3654e07e2f3102ac503499fa51d930f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1atom__type__info.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aef6733cba9b16b7930e84b8f578da630.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a42700069adcc34faeda32076bd173dc1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a5f015134e46f13c6ef9eb9ed84b66d1a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1bf743b12f5bba28eab81d100fa6be6f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acc0e956a0d6382e85c6ecb631e2edd21.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a277d04e4939dd9a5167dc90c21c00266.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ogzip__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a302fdd5a6fea6ea6a874f4e635bd43e3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa629e0bd1ddd07f3ffd7bde1bf0bf0fb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_exports.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acde0f42396a36ed1d56f59e8754968b9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1space__group.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1category.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1af6e09fd9a34540b7718e7f76a0029629.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ostream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_symmetry.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a22f8e0bb538e176ebddfe89c7ef03a6d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_format.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category_1_1item__entry.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abbc95fb717f14cca92d73ff5ed83c685.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_text.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a8442a8beb3ec3862b1223091ba279b3f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a631597613cf60653370f704184d3b9d7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1conditional__iterator__proxy.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__pdb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_cif2pdb.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_item.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1empty__type.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a561da00d019d125f7356b8717771b6b6.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category_1_1link.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_tls.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a88b677fc53a3f1e8e0f15cdb6dc52cb7.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/dir_cif++_pdb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_file.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a9579bd6dc036aa07dcb73e9724cd4f54.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1sym__op.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa697ec53ac311721d137e96508fe6268.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__colour.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1abd4c1fac9978e10628b9317d386d9287.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_utilities_8hpp_1abd165ee6474b5b75bf075842fff13a04.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_dictionary_parser.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/library_root.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/unabridged_orphan.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__handle.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1point__type.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad57ceedd9a74df6a781247532781c5fa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_tls.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_parser.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a3beb1e1704887c34c3ffcf62ba4c93a2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a5ae3b948c3296e47bf3ae734cfdca029.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1atom__type__traits.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aaede7d3ae547f8c18450a83b6bcc42e2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8c224d1a874aab66b434422f03ed85d4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a0d8dcb296d80df362a6d47d62b9e01c9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2190ac2315339dabb5be80f2a8634e29.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a31bf31f1feff330b402ab96d51b4f458.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a34c1ecdfe0e74030d387cc4e3db0f20d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1multiple__results__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/dir_cif++.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a965679d61a80ce38487bb63eb1759281.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_dictionary_parser.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a337647d2ca82951e159b244e0a892f0e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__scalar__multiplication.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__mm.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9a07496ad027d7f53edeba05b8946d15.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__detail.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_item.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1aa8d7a4613d7166fe2e43c36894cbd1e7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__igzip__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a54a676462364096110c8178e02693802.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a04742ae1684db656d2534463f850eb37.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a41d20db90846830c07aa1b4052e4d61f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1ac681cb3a6237bc71dcba0e88fb1c0832.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_iterator.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a1c875e7bda01246ff90860b7228b89b9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4f2dd5c988ef77316bb4fdda57146fd5.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aeb2069c34c7d86acc4418d3740adf5d8.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_atom_type.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aae2f02104c912443c2f40b2647803ccb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1duplicate__key__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category__validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ofstream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a470ad3905a4aa5fe52da998640740ab7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9dbdac69f3a21d391ece6cc214da3075.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1020ee51b50043210b5e9c8eaecd4c28.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a94db0d39a3d82bde5ae35a2d5a729dce.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0987fe676d4bf9554de808bfe9b13a6b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1symop__data.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a52c1d908e7a659686a16cbde3684f7a1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a96cecd643b7fedefcee808419ac8db73.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4c27e27d4cb70a2e13cf2efb05ccd325.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__subtraction.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a867dc9c21324a3e65a931bb4d7160a9e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1aa4bb7030a077b462d75b328a2d6ef70d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1ab82fb33002132ca78f0f0de0855a9883.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validation__exception.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1symmetric__matrix__fixed.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_forward_decl.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_pdb2cif.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__literals.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8c894208d05a89ca79ed66421d241f0f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1425b605f99bf04eeb638f55c0d91566.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8250f4461c4b297082270bc37e532b88.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab4b982e1dc64e54d408cf8a9a99a2851.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1aa1addf5082e01849dc7b0af93aa0d34d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_datablock.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a5c256bdffd9190e69c087e64b69d786d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/index.html make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-arm-linux-gnueabihf' dh_install install -m0755 -d debian/libcifpp-dev//usr @@ -8829,9 +8865,6 @@ install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data install -p -m0644 debian/copyright debian/libcifpp-data/usr/share/doc/libcifpp-data/copyright dh_installchangelogs - install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 - install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog @@ -8841,6 +8874,9 @@ install -m0755 -d debian/libcifpp-doc/usr/share/doc/libcifpp-doc install -p -m0644 debian/.debhelper/generated/libcifpp-doc/dh_installchangelogs.dch.trimmed debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog + install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 + install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog dh_installexamples install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples cp --reflink=auto -a ./examples/1cbs.cif.gz debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples @@ -8867,46 +8903,46 @@ Using 1730185215 as canonical time Normalizing debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz using File::StripNondeterminism::handlers::gzip Using 1730185215 as canonical time + Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/file.png using File::StripNondeterminism::handlers::png - Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/plus.png using File::StripNondeterminism::handlers::png dh_compress cd debian/libcifpp-dev - cd debian/libcifpp7 - chmod a-x usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian - gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian - cd '/build/reproducible-path/libcifpp-7.0.7' - cd '/build/reproducible-path/libcifpp-7.0.7' cd debian/libcifpp-doc cd debian/libcifpp-data + cd debian/libcifpp7 + chmod a-x usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian + gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian - cd '/build/reproducible-path/libcifpp-7.0.7' chmod a-x usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf cd '/build/reproducible-path/libcifpp-7.0.7' + cd '/build/reproducible-path/libcifpp-7.0.7' + chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian + gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian + cd '/build/reproducible-path/libcifpp-7.0.7' + cd '/build/reproducible-path/libcifpp-7.0.7' dh_fixperms - find debian/libcifpp-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp7 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libcifpp7/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp7/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libcifpp-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libcifpp-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-data/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp7/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp7/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libcifpp-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libcifpp-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libcifpp-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libcifpp-data/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libcifpp-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libcifpp7/usr/lib/arm-linux-gnueabihf/libcifpp.so.7.0.7 @@ -8950,50 +8986,50 @@ ' | LC_ALL=C sort >> debian/libcifpp-data/DEBIAN/conffiles chmod 0644 -- debian/libcifpp-data/DEBIAN/conffiles dh_gencontrol + install -m0755 -d debian/libcifpp-data/DEBIAN + echo misc:Pre-Depends= >> debian/libcifpp-data.substvars + dpkg-gencontrol -plibcifpp-data -ldebian/changelog -Tdebian/libcifpp-data.substvars -cdebian/control -Pdebian/libcifpp-data + install -m0755 -d debian/libcifpp-dev/DEBIAN + echo misc:Depends= >> debian/libcifpp-dev.substvars + echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars + dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev install -m0755 -d debian/libcifpp7/DEBIAN echo misc:Depends= >> debian/libcifpp7.substvars echo misc:Pre-Depends= >> debian/libcifpp7.substvars install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/.debhelper/libcifpp7/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcifpp7-dbgsym "-DDepends=libcifpp7 (= \${binary:Version})" "-DDescription=debug symbols for libcifpp7" -DBuild-Ids=68471bbec1f3ca8504ed1ccff7476ffbae90425f -DSection=debug -UReplaces -UBreaks - install -m0755 -d debian/libcifpp-dev/DEBIAN - echo misc:Depends= >> debian/libcifpp-dev.substvars - echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars - dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev - chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/control - dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/libcifpp7 - chmod 0644 -- debian/libcifpp-dev/DEBIAN/control install -m0755 -d debian/libcifpp-doc/DEBIAN echo misc:Depends= >> debian/libcifpp-doc.substvars echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc - chmod 0644 -- debian/libcifpp7/DEBIAN/control - install -m0755 -d debian/libcifpp-data/DEBIAN - echo misc:Pre-Depends= >> debian/libcifpp-data.substvars - dpkg-gencontrol -plibcifpp-data -ldebian/changelog -Tdebian/libcifpp-data.substvars -cdebian/control -Pdebian/libcifpp-data - chmod 0644 -- debian/libcifpp-doc/DEBIAN/control chmod 0644 -- debian/libcifpp-data/DEBIAN/control + chmod 0644 -- debian/libcifpp-dev/DEBIAN/control + chmod 0644 -- debian/libcifpp-doc/DEBIAN/control + chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/control + dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/libcifpp7 + chmod 0644 -- debian/libcifpp7/DEBIAN/control dh_md5sums install -m0755 -d debian/libcifpp-dev/DEBIAN install -m0755 -d debian/libcifpp7/DEBIAN - cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcifpp-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libcifpp-dev/DEBIAN/md5sums install -m0755 -d debian/libcifpp-doc/DEBIAN + cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + install -m0755 -d debian/libcifpp-data/DEBIAN + cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/libcifpp-dev/DEBIAN/md5sums chmod 0644 -- debian/libcifpp7/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN cd debian/.debhelper/libcifpp7/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/libcifpp-data/DEBIAN/md5sums chmod 0644 -- debian/libcifpp-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/md5sums - install -m0755 -d debian/libcifpp-data/DEBIAN - cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libcifpp-data/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/libcifpp-dev .. dpkg-deb --root-owner-group --build debian/libcifpp7 .. dpkg-deb --root-owner-group --build debian/libcifpp-data .. -dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.7-3_armhf.deb'. dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.7-3_armhf.deb'. +dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.7-3_armhf.deb'. dpkg-deb: building package 'libcifpp-data' in '../libcifpp-data_7.0.7-3_all.deb'. dpkg-deb --root-owner-group --build debian/libcifpp-doc .. dpkg-deb: building package 'libcifpp-doc' in '../libcifpp-doc_7.0.7-3_all.deb'. @@ -9006,12 +9042,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/7684/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/7684/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/24011 and its subdirectories -I: Current time: Sun Nov 10 18:38:37 -12 2024 -I: pbuilder-time-stamp: 1731307117 +I: removing directory /srv/workspace/pbuilder/7684 and its subdirectories +I: Current time: Mon Nov 11 20:52:39 +14 2024 +I: pbuilder-time-stamp: 1731307959