Diff of the two buildlogs: -- --- b1/build.log 2024-05-03 07:30:53.667922185 +0000 +++ b2/build.log 2024-05-03 07:35:41.603640926 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 2 19:29:45 -12 2024 -I: pbuilder-time-stamp: 1714721385 +I: Current time: Fri May 3 21:31:03 +14 2024 +I: pbuilder-time-stamp: 1714721463 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/6423/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/28840/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 3 07:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/28840/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/28840/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='1909b2db0ae349eeb65ada6ef31332c3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='6423' - PS1='# ' - PS2='> ' + INVOCATION_ID=cbcc4f5dd3304eb7845a50a3a30b2172 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=28840 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lGbGF0VW/pbuilderrc_PnmY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lGbGF0VW/b1 --logfile b1/build.log libbpp-raa_2.4.1-8.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lGbGF0VW/pbuilderrc_7jkh --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lGbGF0VW/b2 --logfile b2/build.log libbpp-raa_2.4.1-8.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 1 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/6423/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 2 11:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/28840/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -173,7 +205,7 @@ Get: 55 http://deb.debian.org/debian trixie/main armhf libbpp-seq12t64 armhf 2.4.1-12 [438 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libbpp-seq-dev armhf 2.4.1-12 [742 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] -Fetched 32.6 MB in 1s (57.7 MB/s) +Fetched 32.6 MB in 3s (11.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19441 files and directories currently installed.) @@ -416,7 +448,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbpp-raa-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-raa_2.4.1-8_source.changes +I: user script /srv/workspace/pbuilder/28840/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/28840/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbpp-raa-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-raa_2.4.1-8_source.changes dpkg-buildpackage: info: source package libbpp-raa dpkg-buildpackage: info: source version 2.4.1-8 dpkg-buildpackage: info: source distribution unstable @@ -462,8 +498,8 @@ -- includes: /usr/include -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) --- Configuring done (1.4s) --- Generating done (0.0s) +-- Configuring done (6.9s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -474,38 +510,36 @@ -- Build files have been written to: /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-raa-static.dir/build.make src/CMakeFiles/bpp-raa-static.dir/depend -make -f src/CMakeFiles/bpp-raa-shared.dir/build.make src/CMakeFiles/bpp-raa-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' +make -f src/CMakeFiles/bpp-raa-shared.dir/build.make src/CMakeFiles/bpp-raa-shared.dir/depend cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-raa-2.4.1 /build/reproducible-path/libbpp-raa-2.4.1/src /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-raa-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-raa-2.4.1 /build/reproducible-path/libbpp-raa-2.4.1/src /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-raa-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' -make -f src/CMakeFiles/bpp-raa-shared.dir/build.make src/CMakeFiles/bpp-raa-shared.dir/build -make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-raa-static.dir/build.make src/CMakeFiles/bpp-raa-static.dir/build +make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' +make -f src/CMakeFiles/bpp-raa-shared.dir/build.make src/CMakeFiles/bpp-raa-shared.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' -[ 5%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -[ 16%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o -[ 16%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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/build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp -[ 22%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp -[ 27%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c -[ 33%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o +[ 16%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp -[ 38%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp +[ 22%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp +[ 27%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c +[ 33%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ @@ -518,24 +552,27 @@ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ -[ 44%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c -[ 50%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c -[ 55%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c -[ 61%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp -[ 66%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c -[ 72%] Linking CXX shared library libbpp-raa.so -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-raa.so.4 -o libbpp-raa.so.4.0.0 "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o" /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-raa.so.4.0.0 libbpp-raa.so.4 libbpp-raa.so +[ 38%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c +[ 44%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c +[ 50%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c +[ 55%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp +[ 61%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp +[ 66%] Linking CXX static library libbpp-raa.a +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-raa-static.dir/cmake_clean_target.cmake +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-static.dir/link.txt --verbose=1 +/usr/bin/ar qc libbpp-raa.a "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o" +/usr/bin/ranlib libbpp-raa.a make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' -[ 72%] Built target bpp-raa-shared -[ 77%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c +[ 66%] Built target bpp-raa-static +[ 72%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c +[ 77%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ @@ -548,19 +585,18 @@ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ -[ 88%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -[ 88%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c -[ 94%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c -[100%] Linking CXX static library libbpp-raa.a -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-raa-static.dir/cmake_clean_target.cmake -cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-static.dir/link.txt --verbose=1 -/usr/bin/ar qc libbpp-raa.a "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o" -/usr/bin/ranlib libbpp-raa.a +[ 83%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c +[ 88%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c +[ 94%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c +[100%] Linking CXX shared library libbpp-raa.so +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-shared.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-raa.so.4 -o libbpp-raa.so.4.0.0 "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o" /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 +cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-raa.so.4.0.0 libbpp-raa.so.4 libbpp-raa.so make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' -[100%] Built target bpp-raa-static +[100%] Built target bpp-raa-shared make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' @@ -568,7 +604,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/libbpp-raa-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/libbpp-raa-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -587,11 +623,11 @@ -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA_acnuc.h --- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaList.h --- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSeqAttributes.h --- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSpeciesTree.h +-- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/parser.h +-- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaList.h +-- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSeqAttributes.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-raa/bpp-raa-targets.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-raa/bpp-raa-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' @@ -652,12 +688,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/28840/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/28840/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/6423 and its subdirectories -I: Current time: Thu May 2 19:30:49 -12 2024 -I: pbuilder-time-stamp: 1714721449 +I: removing directory /srv/workspace/pbuilder/28840 and its subdirectories +I: Current time: Fri May 3 21:35:37 +14 2024 +I: pbuilder-time-stamp: 1714721737