Diff of the two buildlogs: -- --- b1/build.log 2024-04-16 06:38:40.195349597 +0000 +++ b2/build.log 2024-04-16 06:42:54.124590102 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 15 18:29:50 -12 2024 -I: pbuilder-time-stamp: 1713248990 +I: Current time: Tue Apr 16 20:38:49 +14 2024 +I: pbuilder-time-stamp: 1713249529 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying modify_testing.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2257/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22705/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 16 06:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22705/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22705/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='76f81c47bce548069b15f3f9cfd27007' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2257' - PS1='# ' - PS2='> ' + INVOCATION_ID=4861397194d644fea2a592c10a2a35a9 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22705 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rNPJcvwv/pbuilderrc_LVqH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rNPJcvwv/b1 --logfile b1/build.log icb-utils_2.0.1+git20161002.afee1d9-5.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rNPJcvwv/pbuilderrc_l0yg --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rNPJcvwv/b2 --logfile b2/build.log icb-utils_2.0.1+git20161002.afee1d9-5.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32a 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 10 11:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2257/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 14 11:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/22705/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -420,7 +452,7 @@ Get: 274 http://deb.debian.org/debian trixie/main armhf maven all 3.8.7-2 [19.3 kB] Get: 275 http://deb.debian.org/debian trixie/main armhf maven-repo-helper all 1.11 [142 kB] Get: 276 http://deb.debian.org/debian trixie/main armhf maven-debian-helper all 2.6.4 [108 kB] -Fetched 249 MB in 7s (33.2 MB/s) +Fetched 249 MB in 3s (78.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) @@ -1318,8 +1350,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Apr 16 06:34:40 UTC 2024. -Universal Time is now: Tue Apr 16 06:34:40 UTC 2024. +Local time is now: Tue Apr 16 06:40:50 UTC 2024. +Universal Time is now: Tue Apr 16 06:40:50 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1738,7 +1770,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../icb-utils_2.0.1+git20161002.afee1d9-5_source.changes +I: user script /srv/workspace/pbuilder/22705/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/22705/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../icb-utils_2.0.1+git20161002.afee1d9-5_source.changes dpkg-buildpackage: info: source package icb-utils dpkg-buildpackage: info: source version 2.0.1+git20161002.afee1d9-5 dpkg-buildpackage: info: source distribution unstable @@ -1830,14 +1866,14 @@ [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] Loading source files for package org.apache.unicode... +[WARNING] Loading source files for package edu.cornell.med.icb.net... +[WARNING] Loading source files for package edu.cornell.med.icb.iterators... +[WARNING] Loading source files for package edu.cornell.med.icb.identifier... [WARNING] Loading source files for package edu.cornell.med.icb.io... -[WARNING] Loading source files for package edu.cornell.med.icb.maps... [WARNING] Loading source files for package edu.cornell.med.icb.cli... -[WARNING] Loading source files for package edu.cornell.med.icb.iterators... +[WARNING] Loading source files for package edu.cornell.med.icb.maps... [WARNING] Loading source files for package edu.cornell.med.icb.util... -[WARNING] Loading source files for package edu.cornell.med.icb.identifier... [WARNING] Loading source files for package edu.cornell.med.icb.stat... -[WARNING] Loading source files for package edu.cornell.med.icb.net... [WARNING] Loading source files for package edu.cornell.med.icb.ip... [WARNING] Constructing Javadoc information... [WARNING] Building index for all the packages and classes... @@ -1915,47 +1951,47 @@ [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/package-tree.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/serialized-form.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/class-use/UnicodeCharUtil.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/SyncPipe.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/CommandExecutor.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/FlatteningIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/IteratorIterable.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TextFileLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/PreSortedMergeTextFilesLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TsvLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/RecursiveFileListIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/IndexedIdentifier.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/PropertyMappable.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/DoubleIndexedIdentifier.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.SearchInClasspath.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TSVReader.html... 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[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectInputStream.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.SearchInClasspath.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TsvToFromMap.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParsingException.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectOutputStream.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/maps/class-use/LinkedHashToMultiTypeMap.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/class-use/UseModality.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/FlatteningIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/IteratorIterable.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/PreSortedMergeTextFilesLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TextFileLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/RecursiveFileListIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TsvLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/VersionUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/RandomAdapter.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/maps/class-use/LinkedHashToMultiTypeMap.html... 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[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/BoundedPriorityQueue.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/PropertyMappable.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/DoubleIndexedIdentifier.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/IndexedIdentifier.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AreaUnderTheRocCurveCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/RootMeanSquaredErrorCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MatthewsCorrelationCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/ZScoreCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/RandomAdapter.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/VersionUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SpecificityCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/LinearRegression.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/PredictionStatisticCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/RootMeanSquaredErrorCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MinMaxCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MatthewsCorrelationCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AccuracyCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/ZScoreCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SensitivityCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SpecificityCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/LinearRegression.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/SyncPipe.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/CommandExecutor.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AreaUnderTheRocCurveCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpUtils.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpAddress.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/package-use.html... @@ -1981,8 +2017,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 46.998 s -[INFO] Finished at: 2024-04-15T18:37:27-12:00 +[INFO] Total time: 28.957 s +[INFO] Finished at: 2024-04-16T20:42:10+14:00 [INFO] ------------------------------------------------------------------------ jh_build -O--buildsystem=maven dh_auto_test -O--buildsystem=maven @@ -2023,341 +2059,349 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- +[INFO] Running edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.182 s - in edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator +[INFO] Running edu.cornell.med.icb.iterators.TestTsvLineIterator +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in edu.cornell.med.icb.iterators.TestTsvLineIterator +[INFO] Running edu.cornell.med.icb.iterators.TestTextFileLineIterator +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.iterators.TestTextFileLineIterator +[INFO] Running edu.cornell.med.icb.identifier.TestIndexedIdentifier +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.identifier.TestIndexedIdentifier +[INFO] Running edu.cornell.med.icb.io.TestResourceFinder +20:42:19.813 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.823 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.824 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader +20:42:19.824 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.826 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.826 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using system class loader +20:42:19.827 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] as file in filesystem +20:42:19.827 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - ... fo`und url is [file:/tmp/temp-file.txt] +20:42:19.832 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.832 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.833 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader +20:42:19.833 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.835 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.835 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using system class loader +20:42:19.835 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] as file in filesystem +20:42:19.838 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.841 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.841 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using system class loader +20:42:19.841 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.843 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 +20:42:19.844 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using system class loader +20:42:19.844 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] as file in filesystem +[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.269 s - in edu.cornell.med.icb.io.TestResourceFinder [INFO] Running edu.cornell.med.icb.io.TestConditionsParser -18:37:51.835 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false -18:37:51.848 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' -18:37:51.849 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean -18:37:51.853 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 -18:37:51.853 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' -18:37:51.853 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' -18:37:51.855 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: -18:37:51.855 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' -18:37:51.855 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character -18:37:51.856 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 -18:37:51.857 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' -18:37:51.857 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' -18:37:51.858 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 -18:37:51.859 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' -18:37:51.859 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' -18:37:51.860 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 -18:37:51.860 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' -18:37:51.861 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer -18:37:51.862 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 -18:37:51.862 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' -18:37:51.862 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' -18:37:51.863 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 -18:37:51.864 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' -18:37:51.864 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' -18:37:51.866 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Setting default value: 0.0 -18:37:51.867 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Converting 'BigDecimal' value '0.0' to type 'BigDecimal' -18:37:51.867 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - No conversion required, value is already a BigDecimal -18:37:51.868 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Setting default value: 0 -18:37:51.869 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Converting 'BigInteger' value '0' to type 'BigInteger' -18:37:51.869 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - No conversion required, value is already a BigInteger -18:37:51.869 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false -18:37:51.869 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' -18:37:51.869 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean -18:37:51.869 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 -18:37:51.869 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' -18:37:51.870 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' -18:37:51.870 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: -18:37:51.870 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' -18:37:51.870 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character -18:37:51.870 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 -18:37:51.870 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' -18:37:51.870 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' -18:37:51.871 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 -18:37:51.871 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' -18:37:51.871 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' -18:37:51.871 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 -18:37:51.871 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' -18:37:51.871 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer -18:37:51.872 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 -18:37:51.872 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' -18:37:51.872 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' -18:37:51.872 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 -18:37:51.872 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' -18:37:51.872 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' -18:37:51.874 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Setting default value: -18:37:51.874 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '' to type 'String' -18:37:51.892 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Z@1e7803 -18:37:51.893 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'boolean[]' value '[Z@1e7803' to type 'boolean[]' -18:37:51.893 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a boolean[] -18:37:51.893 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [B@186f9d5 -18:37:51.893 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'byte[]' value '[B@186f9d5' to type 'byte[]' -18:37:51.893 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a byte[] -18:37:51.893 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [C@4d6e83 -18:37:51.894 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'char[]' value '[C@4d6e83' to type 'char[]' -18:37:51.894 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a char[] -18:37:51.894 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [D@1a0cee9 -18:37:51.894 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'double[]' value '[D@1a0cee9' to type 'double[]' -18:37:51.894 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a double[] -18:37:51.894 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [F@da0940 -18:37:51.895 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'float[]' value '[F@da0940' to type 'float[]' -18:37:51.895 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a float[] -18:37:51.895 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [I@6a04ae -18:37:51.895 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'int[]' value '[I@6a04ae' to type 'int[]' -18:37:51.895 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a int[] -18:37:51.896 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [J@ceb130 -18:37:51.896 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'long[]' value '[J@ceb130' to type 'long[]' -18:37:51.896 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a long[] -18:37:51.896 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [S@1b467e9 -18:37:51.896 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'short[]' value '[S@1b467e9' to type 'short[]' -18:37:51.896 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a short[] -18:37:51.897 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigDecimal;@72e3f -18:37:51.897 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@72e3f' to type 'BigDecimal[]' -18:37:51.897 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigDecimal[] -18:37:51.897 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigInteger;@154b04f -18:37:51.897 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@154b04f' to type 'BigInteger[]' -18:37:51.898 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigInteger[] -18:37:51.898 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Boolean;@10726a3 -18:37:51.898 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Boolean[]' value '[Ljava.lang.Boolean;@10726a3' to type 'Boolean[]' -18:37:51.898 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Boolean[] -18:37:51.898 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Byte;@1a15ff -18:37:51.898 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Byte[]' value '[Ljava.lang.Byte;@1a15ff' to type 'Byte[]' -18:37:51.899 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Byte[] -18:37:51.899 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Character;@6279ee -18:37:51.899 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Character[]' value '[Ljava.lang.Character;@6279ee' to type 'Character[]' -18:37:51.899 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Character[] -18:37:51.899 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Double;@f4d528 -18:37:51.900 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Double[]' value '[Ljava.lang.Double;@f4d528' to type 'Double[]' -18:37:51.900 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Double[] -18:37:51.900 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Float;@8ad73b -18:37:51.900 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Float[]' value '[Ljava.lang.Float;@8ad73b' to type 'Float[]' -18:37:51.900 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Float[] -18:37:51.900 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Integer;@41e737 -18:37:51.901 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Integer[]' value '[Ljava.lang.Integer;@41e737' to type 'Integer[]' -18:37:51.901 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Integer[] -18:37:51.901 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Long;@4921a5 -18:37:51.901 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Long[]' value '[Ljava.lang.Long;@4921a5' to type 'Long[]' -18:37:51.902 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Long[] -18:37:51.902 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Short;@a35978 -18:37:51.902 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Short[]' value '[Ljava.lang.Short;@a35978' to type 'Short[]' -18:37:51.902 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Short[] -18:37:51.902 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.String;@10a87b3 -18:37:51.902 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'String[]' value '[Ljava.lang.String;@10a87b3' to type 'String[]' -18:37:51.903 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a String[] -18:37:51.903 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Class;@1cd6521 -18:37:51.903 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Class[]' value '[Ljava.lang.Class;@1cd6521' to type 'Class[]' -18:37:51.903 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Class[] -18:37:51.903 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Date;@18298f -18:37:51.904 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Date[]' value '[Ljava.util.Date;@18298f' to type 'Date[]' -18:37:51.904 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Date[] -18:37:51.904 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Calendar;@179bb86 -18:37:51.904 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Calendar[]' value '[Ljava.util.Calendar;@179bb86' to type 'Calendar[]' -18:37:51.904 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Calendar[] -18:37:51.905 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.io.File;@1cd19b3 -18:37:51.905 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.io.File[]' value '[Ljava.io.File;@1cd19b3' to type 'java.io.File[]' -18:37:51.905 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.io.File[] -18:37:51.905 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Date;@1d66ad3 -18:37:51.905 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@1d66ad3' to type 'java.sql.Date[]' -18:37:51.906 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Date[] -18:37:51.906 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Time;@36aefa -18:37:51.906 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@36aefa' to type 'java.sql.Time[]' -18:37:51.907 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Time[] -18:37:51.907 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Timestamp;@13d7190 -18:37:51.907 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@13d7190' to type 'java.sql.Timestamp[]' -18:37:51.907 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Timestamp[] -18:37:51.907 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.net.URL;@d59286 -18:37:51.907 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.net.URL[]' value '[Ljava.net.URL;@d59286' to type 'java.net.URL[]' -18:37:51.908 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.net.URL[] -18:37:51.966 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' -18:37:51.967 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' -18:37:51.967 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:51.967 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' -18:37:51.970 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' -18:37:51.971 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' -18:37:51.971 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' -18:37:51.971 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' -18:37:51.972 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:51.972 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' -18:37:51.976 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' -18:37:51.976 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' -18:37:51.976 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:51.976 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' -18:37:51.977 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' -18:37:51.977 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' -18:37:51.977 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' -18:37:51.977 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' -18:37:51.977 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:51.977 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' -18:37:51.978 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '8.367' to class 'double' -18:37:51.978 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '8.367' to type 'Double' -18:37:51.978 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:51.978 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '8.367' -18:37:51.979 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3bf' to class 'java.lang.String' -18:37:51.979 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '3bf' to type 'String' -18:37:51.985 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '567' to class 'int' -18:37:51.985 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '567' to type 'Integer' -18:37:51.985 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:51.985 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '567' -18:37:51.992 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean -18:37:51.994 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -18:37:51.995 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -18:37:51.995 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:51.995 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -18:37:51.996 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -18:37:51.996 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -18:37:51.996 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:51.996 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -18:37:51.997 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean -18:37:51.998 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -18:37:51.998 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -18:37:51.998 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:51.998 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -18:37:51.999 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -18:37:51.999 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -18:37:51.999 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:51.999 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -18:37:52.000 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -18:37:52.000 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -18:37:52.000 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.000 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -18:37:52.005 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'int[]' -18:37:52.005 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -18:37:52.005 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.005 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -18:37:52.005 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -18:37:52.006 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.006 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -18:37:52.006 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '30' to type 'Integer' -18:37:52.006 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.006 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '30' -18:37:52.006 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'double[]' -18:37:52.006 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' -18:37:52.007 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.007 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' -18:37:52.007 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 2.5' to type 'Double' -18:37:52.007 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.007 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.5' -18:37:52.007 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 1.5' to type 'Double' -18:37:52.007 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.008 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '1.5' -18:37:52.008 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'java.lang.String[]' -18:37:52.008 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' -18:37:52.008 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field3b' to type 'String' -18:37:52.008 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field 3c' to type 'String' -18:37:52.009 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'int[]' -18:37:52.009 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -18:37:52.009 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.009 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -18:37:52.010 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'double[]' -18:37:52.010 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' -18:37:52.010 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.010 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' -18:37:52.010 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'java.lang.String[]' -18:37:52.010 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' -18:37:52.017 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -18:37:52.018 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -18:37:52.018 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.018 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -18:37:52.018 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -18:37:52.019 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -18:37:52.019 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.019 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -18:37:52.019 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -18:37:52.020 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -18:37:52.020 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.020 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -18:37:52.020 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -18:37:52.020 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -18:37:52.021 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.021 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -18:37:52.021 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -18:37:52.021 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -18:37:52.021 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.022 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -18:37:52.024 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -18:37:52.024 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -18:37:52.024 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.024 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -18:37:52.024 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3.5' to class 'double' -18:37:52.024 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' -18:37:52.025 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.025 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' -18:37:52.025 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'field3' to class 'java.lang.String' -18:37:52.025 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' -18:37:52.026 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -18:37:52.026 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -18:37:52.026 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.026 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -18:37:52.026 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '2.2' to class 'double' -18:37:52.027 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' -18:37:52.027 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.027 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' -18:37:52.027 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'threedefault' to class 'java.lang.String' -18:37:52.027 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' -18:37:52.032 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -18:37:52.033 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -18:37:52.033 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.033 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -18:37:52.034 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -18:37:52.034 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -18:37:52.034 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.034 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -18:37:52.034 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '10' to class 'int' -18:37:52.035 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '10' to type 'Integer' -18:37:52.035 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.035 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '10' -18:37:52.035 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -18:37:52.036 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -18:37:52.036 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.036 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -18:37:52.038 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -18:37:52.039 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -18:37:52.039 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.039 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -18:37:52.039 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '20' to class 'int' -18:37:52.040 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '20' to type 'Integer' -18:37:52.040 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.040 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '20' -18:37:52.043 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -18:37:52.044 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -18:37:52.044 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.044 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -18:37:52.045 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -18:37:52.045 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -18:37:52.045 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.045 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -18:37:52.045 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -18:37:52.045 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -18:37:52.046 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.046 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -18:37:52.046 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -18:37:52.046 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -18:37:52.055 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -18:37:52.055 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -18:37:52.055 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -18:37:52.056 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -18:37:52.056 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -18:37:52.056 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.745 s - in edu.cornell.med.icb.io.TestConditionsParser +20:42:19.897 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false +20:42:19.898 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' +20:42:19.898 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean +20:42:19.901 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 +20:42:19.901 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' +20:42:19.901 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' +20:42:19.902 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: +20:42:19.903 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' +20:42:19.903 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character +20:42:19.904 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 +20:42:19.904 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' +20:42:19.904 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' +20:42:19.905 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 +20:42:19.905 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' +20:42:19.906 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' +20:42:19.906 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 +20:42:19.907 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' +20:42:19.907 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer +20:42:19.907 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 +20:42:19.908 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' +20:42:19.908 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' +20:42:19.909 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 +20:42:19.909 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' +20:42:19.909 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' +20:42:19.911 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Setting default value: 0.0 +20:42:19.911 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Converting 'BigDecimal' value '0.0' to type 'BigDecimal' +20:42:19.912 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - No conversion required, value is already a BigDecimal +20:42:19.913 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Setting default value: 0 +20:42:19.913 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Converting 'BigInteger' value '0' to type 'BigInteger' +20:42:19.913 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - No conversion required, value is already a BigInteger +20:42:19.913 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false +20:42:19.913 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' +20:42:19.913 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean +20:42:19.914 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 +20:42:19.914 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' +20:42:19.914 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' +20:42:19.914 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: +20:42:19.914 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' +20:42:19.914 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character +20:42:19.916 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 +20:42:19.916 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' +20:42:19.916 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' +20:42:19.916 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' +20:42:19.917 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' +20:42:19.918 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Setting default value: +20:42:19.919 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '' to type 'String' +20:42:19.930 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Z@75aa0d +20:42:19.930 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'boolean[]' value '[Z@75aa0d' to type 'boolean[]' +20:42:19.930 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a boolean[] +20:42:19.930 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [B@bb3d47 +20:42:19.930 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'byte[]' value '[B@bb3d47' to type 'byte[]' +20:42:19.930 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a byte[] +20:42:19.930 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [C@7e5409 +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'char[]' value '[C@7e5409' to type 'char[]' +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a char[] +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [D@198b989 +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'double[]' value '[D@198b989' to type 'double[]' +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a double[] +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [F@dd0edd +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'float[]' value '[F@dd0edd' to type 'float[]' +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a float[] +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [I@a37dbf +20:42:19.931 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'int[]' value '[I@a37dbf' to type 'int[]' +20:42:19.932 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a int[] +20:42:19.932 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [J@144655e +20:42:19.932 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'long[]' value '[J@144655e' to type 'long[]' +20:42:19.932 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a long[] +20:42:19.932 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [S@176aeea +20:42:19.932 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'short[]' value '[S@176aeea' to type 'short[]' +20:42:19.932 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a short[] +20:42:19.932 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigDecimal;@db82ae +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@db82ae' to type 'BigDecimal[]' +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigDecimal[] +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigInteger;@b729e6 +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@b729e6' to type 'BigInteger[]' +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigInteger[] +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Boolean;@1c86f2d +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Boolean[]' value '[Ljava.lang.Boolean;@1c86f2d' to type 'Boolean[]' +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Boolean[] +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Byte;@2e37bc +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Byte[]' value '[Ljava.lang.Byte;@2e37bc' to type 'Byte[]' +20:42:19.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Byte[] +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Character;@1f82230 +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Character[]' value '[Ljava.lang.Character;@1f82230' to type 'Character[]' +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Character[] +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Double;@1c10b87 +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Double[]' value '[Ljava.lang.Double;@1c10b87' to type 'Double[]' +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Double[] +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Float;@955565 +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Float[]' value '[Ljava.lang.Float;@955565' to type 'Float[]' +20:42:19.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Float[] +20:42:19.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Integer;@195092a +20:42:19.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Integer[]' value '[Ljava.lang.Integer;@195092a' to type 'Integer[]' +20:42:19.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Integer[] +20:42:19.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Long;@18c1ddd +20:42:19.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Long[]' value '[Ljava.lang.Long;@18c1ddd' to type 'Long[]' +20:42:19.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Long[] +20:42:19.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Short;@133814f +20:42:19.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Short[]' value '[Ljava.lang.Short;@133814f' to type 'Short[]' +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Short[] +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.String;@1986957 +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'String[]' value '[Ljava.lang.String;@1986957' to type 'String[]' +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a String[] +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Class;@730495 +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Class[]' value '[Ljava.lang.Class;@730495' to type 'Class[]' +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Class[] +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Date;@1082e88 +20:42:19.936 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Date[]' value '[Ljava.util.Date;@1082e88' to type 'Date[]' +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Date[] +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Calendar;@b19b79 +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Calendar[]' value '[Ljava.util.Calendar;@b19b79' to type 'Calendar[]' +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Calendar[] +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.io.File;@92d9cc +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.io.File[]' value '[Ljava.io.File;@92d9cc' to type 'java.io.File[]' +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.io.File[] +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Date;@11302d6 +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@11302d6' to type 'java.sql.Date[]' +20:42:19.937 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Date[] +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Time;@1529fee +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@1529fee' to type 'java.sql.Time[]' +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Time[] +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Timestamp;@5c96b +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@5c96b' to type 'java.sql.Timestamp[]' +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Timestamp[] +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.net.URL;@1d6b6c7 +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.net.URL[]' value '[Ljava.net.URL;@1d6b6c7' to type 'java.net.URL[]' +20:42:19.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.net.URL[] +20:42:19.977 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' +20:42:19.977 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' +20:42:19.977 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:19.977 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' +20:42:19.980 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' +20:42:19.980 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' +20:42:19.980 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' +20:42:19.980 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' +20:42:19.981 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:19.981 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' +20:42:19.983 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' +20:42:19.983 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' +20:42:19.983 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:19.984 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' +20:42:19.984 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' +20:42:19.984 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' +20:42:19.984 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' +20:42:19.984 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' +20:42:19.984 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:19.984 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' +20:42:19.985 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '8.367' to class 'double' +20:42:19.985 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '8.367' to type 'Double' +20:42:19.985 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:19.985 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '8.367' +20:42:19.985 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3bf' to class 'java.lang.String' +20:42:19.985 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '3bf' to type 'String' +20:42:19.990 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '567' to class 'int' +20:42:19.990 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '567' to type 'Integer' +20:42:19.990 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:19.990 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '567' +20:42:19.992 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean +20:42:19.994 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +20:42:19.995 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +20:42:19.995 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:19.995 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +20:42:19.995 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +20:42:19.995 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +20:42:19.995 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:19.996 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +20:42:19.996 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean +20:42:19.997 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +20:42:19.997 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +20:42:19.997 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:19.997 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +20:42:19.998 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +20:42:19.998 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +20:42:19.998 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:19.998 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +20:42:19.998 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +20:42:19.998 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +20:42:19.998 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:19.998 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +20:42:20.001 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'int[]' +20:42:20.001 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +20:42:20.001 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.001 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '30' to type 'Integer' +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '30' +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'double[]' +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' +20:42:20.002 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.003 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' +20:42:20.003 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 2.5' to type 'Double' +20:42:20.003 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.003 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.5' +20:42:20.003 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 1.5' to type 'Double' +20:42:20.003 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.003 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '1.5' +20:42:20.003 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'java.lang.String[]' +20:42:20.004 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' +20:42:20.004 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field3b' to type 'String' +20:42:20.004 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field 3c' to type 'String' +20:42:20.004 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'int[]' +20:42:20.004 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +20:42:20.004 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.004 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +20:42:20.005 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'double[]' +20:42:20.005 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' +20:42:20.005 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.005 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' +20:42:20.005 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'java.lang.String[]' +20:42:20.005 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' +20:42:20.009 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +20:42:20.009 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +20:42:20.009 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.009 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +20:42:20.010 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +20:42:20.010 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +20:42:20.010 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.010 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +20:42:20.010 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +20:42:20.010 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +20:42:20.010 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.011 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +20:42:20.011 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +20:42:20.011 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +20:42:20.011 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.011 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +20:42:20.011 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +20:42:20.011 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +20:42:20.012 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.012 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +20:42:20.013 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +20:42:20.013 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +20:42:20.013 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.014 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +20:42:20.014 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3.5' to class 'double' +20:42:20.014 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' +20:42:20.014 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.014 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' +20:42:20.014 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'field3' to class 'java.lang.String' +20:42:20.014 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' +20:42:20.014 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '2.2' to class 'double' +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'threedefault' to class 'java.lang.String' +20:42:20.015 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' +20:42:20.020 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +20:42:20.020 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +20:42:20.020 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.020 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +20:42:20.020 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +20:42:20.020 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +20:42:20.021 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.021 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +20:42:20.021 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '10' to class 'int' +20:42:20.021 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '10' to type 'Integer' +20:42:20.021 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.021 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '10' +20:42:20.021 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +20:42:20.022 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +20:42:20.022 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.022 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +20:42:20.024 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +20:42:20.032 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +20:42:20.032 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.033 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +20:42:20.033 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '20' to class 'int' +20:42:20.033 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '20' to type 'Integer' +20:42:20.033 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.033 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '20' +20:42:20.035 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +20:42:20.035 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +20:42:20.036 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.036 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +20:42:20.036 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +20:42:20.036 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +20:42:20.036 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.036 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +20:42:20.037 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +20:42:20.037 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +20:42:20.037 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.037 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +20:42:20.037 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +20:42:20.037 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +20:42:20.038 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +20:42:20.038 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +20:42:20.038 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +20:42:20.038 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +20:42:20.038 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +20:42:20.038 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.195 s - in edu.cornell.med.icb.io.TestConditionsParser [INFO] Running edu.cornell.med.icb.io.TestTSVReader [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.io.TestTSVReader -[INFO] Running edu.cornell.med.icb.io.TestResourceFinder -18:37:52.229 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.234 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.234 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader -18:37:52.235 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.238 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.238 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using system class loader -18:37:52.239 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] as file in filesystem -18:37:52.240 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - ... fo`und url is [file:/tmp/temp-file.txt] -18:37:52.242 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.242 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.245 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader -18:37:52.245 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.247 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.248 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using system class loader -18:37:52.248 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] as file in filesystem -18:37:52.254 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.256 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.257 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using system class loader -18:37:52.257 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.259 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@387f44 -18:37:52.260 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using system class loader -18:37:52.260 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] as file in filesystem -[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.011 s - in edu.cornell.med.icb.io.TestResourceFinder [INFO] Running edu.cornell.med.icb.cli.TestUseModality (-m|--mode) Mode of execution, one of: mode1 @@ -2365,36 +2409,28 @@ [-h|--help] This message. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.057 s - in edu.cornell.med.icb.cli.TestUseModality -[INFO] Running edu.cornell.med.icb.iterators.TestTextFileLineIterator -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.iterators.TestTextFileLineIterator -[INFO] Running edu.cornell.med.icb.iterators.TestTsvLineIterator -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.283 s - in edu.cornell.med.icb.iterators.TestTsvLineIterator -[INFO] Running edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.804 s - in edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator -[INFO] Running edu.cornell.med.icb.util.TestRandomAdapter -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in edu.cornell.med.icb.util.TestRandomAdapter -[INFO] Running edu.cornell.med.icb.util.TestVersionUtils -18:37:53.607 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN -18:37:53.609 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN -18:37:53.615 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: 2.6 -[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.01 s - in edu.cornell.med.icb.util.TestVersionUtils -[INFO] Running edu.cornell.med.icb.util.TestICBFilenameUtils -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in edu.cornell.med.icb.util.TestICBFilenameUtils -[INFO] Running edu.cornell.med.icb.util.TestSimpleChecksum -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in edu.cornell.med.icb.util.TestSimpleChecksum +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 s - in edu.cornell.med.icb.cli.TestUseModality [INFO] Running edu.cornell.med.icb.util.TestICBStringNormalizer -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in edu.cornell.med.icb.util.TestICBStringNormalizer -[INFO] Running edu.cornell.med.icb.util.TestICBStringUtils -[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.058 s - in edu.cornell.med.icb.util.TestICBStringUtils +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.util.TestICBStringNormalizer +[INFO] Running edu.cornell.med.icb.util.TestSimpleChecksum +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in edu.cornell.med.icb.util.TestSimpleChecksum [INFO] Running edu.cornell.med.icb.util.TestBoundedPriorityQueue -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in edu.cornell.med.icb.util.TestBoundedPriorityQueue -[INFO] Running edu.cornell.med.icb.identifier.TestIndexedIdentifier -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 s - in edu.cornell.med.icb.identifier.TestIndexedIdentifier -[INFO] Running edu.cornell.med.icb.ip.TestIpAddress -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in edu.cornell.med.icb.ip.TestIpAddress +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in edu.cornell.med.icb.util.TestBoundedPriorityQueue +[INFO] Running edu.cornell.med.icb.util.TestICBFilenameUtils +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.util.TestICBFilenameUtils +[INFO] Running edu.cornell.med.icb.util.TestRandomAdapter +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.043 s - in edu.cornell.med.icb.util.TestRandomAdapter +[INFO] Running edu.cornell.med.icb.util.TestICBStringUtils +[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 s - in edu.cornell.med.icb.util.TestICBStringUtils +[INFO] Running edu.cornell.med.icb.util.TestVersionUtils +20:42:20.301 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN +20:42:20.302 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN +20:42:20.306 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: 2.6 +[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.002 s - in edu.cornell.med.icb.util.TestVersionUtils [INFO] Running edu.cornell.med.icb.ip.TestIpUtils -[WARNING] Tests run: 13, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.008 s - in edu.cornell.med.icb.ip.TestIpUtils +[WARNING] Tests run: 13, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.002 s - in edu.cornell.med.icb.ip.TestIpUtils +[INFO] Running edu.cornell.med.icb.ip.TestIpAddress +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in edu.cornell.med.icb.ip.TestIpAddress [INFO] [INFO] Results: [INFO] @@ -2403,8 +2439,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 28.214 s -[INFO] Finished at: 2024-04-15T18:38:00-12:00 +[INFO] Total time: 13.329 s +[INFO] Finished at: 2024-04-16T20:42:28+14:00 [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=maven @@ -2436,15 +2472,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 1.978 s -[INFO] Finished at: 2024-04-15T18:38:06-12:00 +[INFO] Total time: 1.146 s +[INFO] Finished at: 2024-04-16T20:42:32+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibicb-utils-java --base-directory=/build/reproducible-path/icb-utils-2.0.1\+git20161002.afee1d9 --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/colt/colt/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/colt/colt -Apr 15, 2024 6:38:17 PM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Apr 16, 2024 8:42:41 PM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/pom.xml: Dependency not found colt:colt:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: colt:colt:debian @@ -2480,12 +2516,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22705/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22705/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2257 and its subdirectories -I: Current time: Mon Apr 15 18:38:34 -12 2024 -I: pbuilder-time-stamp: 1713249514 +I: removing directory /srv/workspace/pbuilder/22705 and its subdirectories +I: Current time: Tue Apr 16 20:42:49 +14 2024 +I: pbuilder-time-stamp: 1713249769