Diff of the two buildlogs: -- --- b1/build.log 2024-04-19 16:46:27.824378248 +0000 +++ b2/build.log 2024-04-19 16:48:51.978248131 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Apr 19 04:43:17 -12 2024 -I: pbuilder-time-stamp: 1713544997 +I: Current time: Sat Apr 20 06:46:47 +14 2024 +I: pbuilder-time-stamp: 1713545207 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking golang-github-biogo-biogo_1.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/8654/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10736/tmp/hooks/D01_modify_environment starting +debug: Running on virt32z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 19 16:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10736/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10736/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='9ab193c37b564e59a1df3a74a34d8e88' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='8654' - PS1='# ' - PS2='> ' + INVOCATION_ID=5a69f612cb6b4f4aa0b7a2d002236173 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10736 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.clueSNZe/pbuilderrc_b2Xr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.clueSNZe/b1 --logfile b1/build.log golang-github-biogo-biogo_1.0.4-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.clueSNZe/pbuilderrc_puaA --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.clueSNZe/b2 --logfile b2/build.log golang-github-biogo-biogo_1.0.4-1.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64b 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 17 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/8654/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 19 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/10736/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -173,7 +205,7 @@ Get: 52 http://deb.debian.org/debian trixie/main armhf golang-github-biogo-store-dev all 0.0~git20200525.8c94ae1-2 [34.3 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB] -Fetched 68.4 MB in 1s (51.0 MB/s) +Fetched 68.4 MB in 1s (85.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) @@ -404,7 +436,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/golang-github-biogo-biogo-1.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-biogo-biogo_1.0.4-1_source.changes +I: user script /srv/workspace/pbuilder/10736/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/10736/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-biogo-biogo-1.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-biogo-biogo_1.0.4-1_source.changes dpkg-buildpackage: info: source package golang-github-biogo-biogo dpkg-buildpackage: info: source version 1.0.4-1 dpkg-buildpackage: info: source distribution unstable @@ -422,32 +458,32 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 3 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util -github.com/biogo/biogo + cd _build && go install -trimpath -v -p 4 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util internal/goarch internal/unsafeheader +github.com/biogo/biogo +internal/coverage/rtcov +internal/chacha8rand internal/cpu internal/abi -internal/chacha8rand -internal/bytealg -internal/coverage/rtcov internal/godebugs internal/goexperiment internal/goos -runtime/internal/atomic runtime/internal/math runtime/internal/sys +internal/bytealg +runtime/internal/atomic runtime/internal/syscall internal/itoa -unicode/utf8 math/bits +unicode/utf8 internal/race -math sync/atomic +math unicode -runtime cmp slices +runtime encoding github.com/biogo/store/llrb log/internal @@ -456,84 +492,84 @@ sync internal/testlog internal/bisect +internal/godebug errors sort -internal/godebug -strconv +math/rand io +strconv internal/oserror internal/safefilepath -path syscall +path strings -reflect -github.com/biogo/biogo/feat text/tabwriter +reflect hash container/heap bytes -bufio -internal/syscall/unix -time -internal/syscall/execenv +github.com/biogo/biogo/feat internal/saferio github.com/biogo/biogo/io/featio -math/rand github.com/biogo/store/interval +bufio hash/adler32 github.com/biogo/biogo/feat/gene -internal/poll +internal/syscall/unix +internal/syscall/execenv +time internal/fmtsort -io/fs encoding/binary +internal/poll +io/fs os io/ioutil fmt -github.com/biogo/biogo/util -encoding/gob github.com/biogo/biogo/alphabet encoding/csv +encoding/gob +github.com/biogo/biogo/util +github.com/biogo/graph +log +compress/flate github.com/biogo/biogo/seq github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align github.com/biogo/biogo/seq/linear +github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/seqio +compress/zlib github.com/biogo/biogo/io/seqio/fasta -github.com/biogo/graph -github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/morass -github.com/biogo/biogo/io/featio/gff -github.com/biogo/biogo/align/pals/filter -log -compress/flate -github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/concurrent -github.com/biogo/biogo/align/pals +github.com/biogo/biogo/complexity +github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/errors -compress/zlib +github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 -github.com/biogo/biogo/complexity -github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 +github.com/biogo/biogo/feat/genome/drosophila/dm3 +github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/feat/genome/mouse/mm10 +github.com/biogo/biogo/align/pals github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/seq/multi github.com/biogo/hts/fai github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fastq -github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/pwm +github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/quality dh_auto_test -O--builddirectory=_build -O--buildsystem=golang - cd _build && go test -vet=off -v -p 3 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util + cd _build && go test -vet=off -v -p 4 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util ? github.com/biogo/biogo [no test files] ? github.com/biogo/biogo/align/matrix [no test files] === RUN Test OK: 2 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.02s) === RUN ExampleFitted_Align --- PASS: ExampleFitted_Align (0.00s) === RUN ExampleFittedAffine_Align @@ -549,22 +585,22 @@ === RUN ExampleSWAffine_Align --- PASS: ExampleSWAffine_Align (0.00s) PASS -ok github.com/biogo/biogo/align 0.011s +ok github.com/biogo/biogo/align 0.053s === RUN Test OK: 5 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.03s) PASS -ok github.com/biogo/biogo/align/pals 0.014s +ok github.com/biogo/biogo/align/pals 0.067s === RUN Test OK: 1 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.02s) PASS -ok github.com/biogo/biogo/align/pals/dp 0.015s +ok github.com/biogo/biogo/align/pals/dp 0.056s === RUN Test OK: 1 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.03s) PASS -ok github.com/biogo/biogo/align/pals/filter 0.014s +ok github.com/biogo/biogo/align/pals/filter 0.067s === RUN Test OK: 10 passed --- PASS: Test (0.01s) @@ -573,101 +609,286 @@ === RUN Example_complement --- PASS: Example_complement (0.00s) PASS -ok github.com/biogo/biogo/alphabet 0.015s +ok github.com/biogo/biogo/alphabet 0.028s === RUN Test OK: 4 passed ---- PASS: Test (1.47s) +--- PASS: Test (1.65s) PASS -ok github.com/biogo/biogo/complexity 1.487s +ok github.com/biogo/biogo/complexity 1.688s === RUN Test OK: 1 passed --- PASS: Test (0.00s) === RUN ExampleMap --- PASS: ExampleMap (0.00s) === RUN ExamplePromiseMap ---- PASS: ExamplePromiseMap (1.01s) +--- PASS: ExamplePromiseMap (1.02s) === RUN ExampleLazily --- PASS: ExampleLazily (0.00s) PASS -ok github.com/biogo/biogo/concurrent 1.027s +ok github.com/biogo/biogo/concurrent 1.032s === RUN Test OK: 3 passed, 1 skipped --- PASS: Test (0.00s) PASS -ok github.com/biogo/biogo/errors 0.006s +ok github.com/biogo/biogo/errors 0.017s ? github.com/biogo/biogo/feat/genome [no test files] +? github.com/biogo/biogo/feat/genome/cow/bt7 [no test files] === RUN Test OK: 6 passed --- PASS: Test (0.00s) PASS -ok github.com/biogo/biogo/feat 0.016s +ok github.com/biogo/biogo/feat 0.019s === RUN Test OK: 4 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) PASS -ok github.com/biogo/biogo/feat/gene 0.013s -? github.com/biogo/biogo/feat/genome/cow/bt7 [no test files] +ok github.com/biogo/biogo/feat/gene 0.031s ? github.com/biogo/biogo/feat/genome/drosophila/dm3 [no test files] ? github.com/biogo/biogo/feat/genome/human/hg19 [no test files] ? github.com/biogo/biogo/feat/genome/mouse/mm10 [no test files] ? github.com/biogo/biogo/io/seqio/fai [no test files] ? github.com/biogo/biogo/pwm [no test files] === RUN Test -OK: 5 passed ---- PASS: Test (5.72s) -PASS -ok github.com/biogo/biogo/index/kmerindex 6.065s +runtime: out of memory: cannot allocate 272629760-byte block (2952396800 in use) +fatal error: out of memory + +goroutine 5 gp=0x1884fc8 m=0 mp=0x419120 [running]: +runtime.throw({0x277ea4, 0xd}) + /usr/lib/go-1.22/src/runtime/panic.go:1023 +0x4c fp=0x18c5a24 sp=0x18c5a10 pc=0x55528 +runtime.(*mcache).allocLarge(0xb6f4f088, 0x10000004, 0x1) + /usr/lib/go-1.22/src/runtime/mcache.go:236 +0x1c4 fp=0x18c5a50 sp=0x18c5a24 pc=0x2a814 +runtime.mallocgc(0x10000004, 0x2486f0, 0x1) + /usr/lib/go-1.22/src/runtime/malloc.go:1165 +0x708 fp=0x18c5a98 sp=0x18c5a50 pc=0x2122c +runtime.makeslice(0x2486f0, 0x4000001, 0x4000001) + /usr/lib/go-1.22/src/runtime/slice.go:107 +0xa8 fp=0x18c5aac sp=0x18c5a98 pc=0x72bdc +github.com/biogo/biogo/index/kmerindex.New(0xd, 0x1860040) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex.go:71 +0xa0 fp=0x18c5ad4 sp=0x18c5aac pc=0x22a810 +github.com/biogo/biogo/index/kmerindex.(*S).TestKmerPositionsString(0x1898150, 0x18fc218) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex_test.go:105 +0x50 fp=0x18c5c48 sp=0x18c5ad4 pc=0x22ca04 +runtime.call16(0x189cce0, 0x4efbe00, 0x4efbe08, 0x8, 0x8, 0x8, 0x18c5d50) + /usr/lib/go-1.22/src/runtime/asm_arm.s:488 +0x4c fp=0x18c5c5c sp=0x18c5c48 pc=0x93d00 +reflect.Value.call({0x26fec8, 0x1898150, 0x8e13}, {0x275912, 0x4}, {0x18c5fa4, 0x1, 0x1}) + /usr/lib/go-1.22/src/reflect/value.go:596 +0x8c0 fp=0x18c5ee4 sp=0x18c5c5c pc=0x108324 +reflect.Value.Call({0x26fec8, 0x1898150, 0x8e13}, {0x1955fa4, 0x1, 0x1}) + /usr/lib/go-1.22/src/reflect/value.go:380 +0x7c fp=0x18c5f20 sp=0x18c5ee4 pc=0x107890 +gopkg.in/check%2ev1.(*suiteRunner).forkTest.func1(0x18fc218) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:781 +0x640 fp=0x18c5fb8 sp=0x18c5f20 pc=0x21f93c +gopkg.in/check%2ev1.(*suiteRunner).forkCall.func1() + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:675 +0xac fp=0x18c5fec sp=0x18c5fb8 pc=0x21ec58 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x18c5fec sp=0x18c5fec pc=0x95500 +created by gopkg.in/check%2ev1.(*suiteRunner).forkCall in goroutine 18 + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:672 +0x22c + +goroutine 1 gp=0x1802128 m=nil [chan receive]: +runtime.gopark(0x287458, 0x18962b0, 0xe, 0x7, 0x2) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x18c6c8c sp=0x18c6c78 pc=0x58c54 +runtime.chanrecv(0x1896280, 0x18d3d03, 0x1) + /usr/lib/go-1.22/src/runtime/chan.go:583 +0x4b0 fp=0x18c6cc8 sp=0x18c6c8c pc=0x19e24 +runtime.chanrecv1(0x1896280, 0x18d3d03) + /usr/lib/go-1.22/src/runtime/chan.go:442 +0x20 fp=0x18c6cdc sp=0x18c6cc8 pc=0x19944 +testing.(*T).Run(0x18f2008, {0x2757c6, 0x4}, 0x287370) + /usr/lib/go-1.22/src/testing/testing.go:1750 +0x3e4 fp=0x18c6d40 sp=0x18c6cdc pc=0x14b154 +testing.runTests.func1(0x18f2008) + /usr/lib/go-1.22/src/testing/testing.go:2161 +0x48 fp=0x18c6d60 sp=0x18c6d40 pc=0x14d340 +testing.tRunner(0x18f2008, 0x18d3e0c) + /usr/lib/go-1.22/src/testing/testing.go:1689 +0x128 fp=0x18c6dac sp=0x18c6d60 pc=0x14a2b0 +testing.runTests(0x189a080, {0x412e00, 0x1, 0x1}, {0xc180c68c9da4b94b, 0x8bb33dbf26, 0x418980}) + /usr/lib/go-1.22/src/testing/testing.go:2159 +0x3f0 fp=0x18c6e1c sp=0x18c6dac pc=0x14d1f0 +testing.(*M).Run(0x18a0050) + /usr/lib/go-1.22/src/testing/testing.go:2027 +0x654 fp=0x18c6f68 sp=0x18c6e1c pc=0x14bb58 +main.main() + _testmain.go:47 +0x164 fp=0x18c6fa8 sp=0x18c6f68 pc=0x22f804 +runtime.main() + /usr/lib/go-1.22/src/runtime/proc.go:271 +0x2fc fp=0x18c6fec sp=0x18c6fa8 pc=0x586a8 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x18c6fec sp=0x18c6fec pc=0x95500 + +goroutine 2 gp=0x1802488 m=nil [force gc (idle)]: +runtime.gopark(0x2875d4, 0x418648, 0x11, 0xa, 0x1) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x1840fd4 sp=0x1840fc0 pc=0x58c54 +runtime.goparkunlock(...) + /usr/lib/go-1.22/src/runtime/proc.go:408 +runtime.forcegchelper() + /usr/lib/go-1.22/src/runtime/proc.go:326 +0xe4 fp=0x1840fec sp=0x1840fd4 pc=0x58a74 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x1840fec sp=0x1840fec pc=0x95500 +created by runtime.init.5 in goroutine 1 + /usr/lib/go-1.22/src/runtime/proc.go:314 +0x1c + +goroutine 3 gp=0x18027e8 m=nil [GC sweep wait]: +runtime.gopark(0x2875d4, 0x4187f0, 0xc, 0x9, 0x1) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x18417c4 sp=0x18417b0 pc=0x58c54 +runtime.goparkunlock(...) + /usr/lib/go-1.22/src/runtime/proc.go:408 +runtime.bgsweep(0x1818040) + /usr/lib/go-1.22/src/runtime/mgcsweep.go:318 +0x11c fp=0x18417e4 sp=0x18417c4 pc=0x3f45c +runtime.gcenable.gowrap1() + /usr/lib/go-1.22/src/runtime/mgc.go:203 +0x28 fp=0x18417ec sp=0x18417e4 pc=0x2f57c +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x18417ec sp=0x18417ec pc=0x95500 +created by runtime.gcenable in goroutine 1 + /usr/lib/go-1.22/src/runtime/mgc.go:203 +0x74 + +goroutine 4 gp=0x1802908 m=nil [GC scavenge wait]: +runtime.gopark(0x2875d4, 0x418ae8, 0xd, 0xa, 0x2) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x1841fb4 sp=0x1841fa0 pc=0x58c54 +runtime.goparkunlock(...) + /usr/lib/go-1.22/src/runtime/proc.go:408 +runtime.(*scavengerState).park(0x418ae8) + /usr/lib/go-1.22/src/runtime/mgcscavenge.go:425 +0x68 fp=0x1841fc8 sp=0x1841fb4 pc=0x3c77c +runtime.bgscavenge(0x1818040) + /usr/lib/go-1.22/src/runtime/mgcscavenge.go:658 +0x60 fp=0x1841fe4 sp=0x1841fc8 pc=0x3ceb4 +runtime.gcenable.gowrap2() + /usr/lib/go-1.22/src/runtime/mgc.go:204 +0x28 fp=0x1841fec sp=0x1841fe4 pc=0x2f528 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x1841fec sp=0x1841fec pc=0x95500 +created by runtime.gcenable in goroutine 1 + /usr/lib/go-1.22/src/runtime/mgc.go:204 +0xbc + +goroutine 17 gp=0x1884248 m=nil [finalizer wait]: +runtime.gopark(0x287478, 0x4428c8, 0x10, 0xa, 0x1) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x183c78c sp=0x183c778 pc=0x58c54 +runtime.runfinq() + /usr/lib/go-1.22/src/runtime/mfinal.go:194 +0x110 fp=0x183c7ec sp=0x183c78c pc=0x2e368 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x183c7ec sp=0x183c7ec pc=0x95500 +created by runtime.createfing in goroutine 1 + /usr/lib/go-1.22/src/runtime/mfinal.go:164 +0x5c + +goroutine 18 gp=0x1884a28 m=nil [chan receive]: +runtime.gopark(0x287458, 0x18600f0, 0xe, 0x7, 0x2) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x18c4e38 sp=0x18c4e24 pc=0x58c54 +runtime.chanrecv(0x18600c0, 0x0, 0x1) + /usr/lib/go-1.22/src/runtime/chan.go:583 +0x4b0 fp=0x18c4e74 sp=0x18c4e38 pc=0x19e24 +runtime.chanrecv1(0x18600c0, 0x0) + /usr/lib/go-1.22/src/runtime/chan.go:442 +0x20 fp=0x18c4e88 sp=0x18c4e74 pc=0x19944 +gopkg.in/check%2ev1.(*suiteRunner).runTest(...) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:819 +gopkg.in/check%2ev1.(*suiteRunner).run(0x18a00f0) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:624 +0x280 fp=0x18c4eb0 sp=0x18c4e88 pc=0x21e8a4 +gopkg.in/check%2ev1.Run({0x26fec8, 0x1898150}, 0x1840760) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:92 +0x38 fp=0x18c4ec4 sp=0x18c4eb0 pc=0x2241b0 +gopkg.in/check%2ev1.RunAll(0x18c4f60) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:84 +0x84 fp=0x18c4efc sp=0x18c4ec4 pc=0x224010 +gopkg.in/check%2ev1.TestingT(0x18f2108) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/run.go:72 +0x298 fp=0x18c4f8c sp=0x18c4efc pc=0x223cec +github.com/biogo/biogo/index/kmerindex.Test(0x18f2108) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/github.com/biogo/biogo/index/kmerindex/kmerindex_test.go:20 +0x1c fp=0x18c4f94 sp=0x18c4f8c pc=0x22b5e0 +testing.tRunner(0x18f2108, 0x287370) + /usr/lib/go-1.22/src/testing/testing.go:1689 +0x128 fp=0x18c4fe0 sp=0x18c4f94 pc=0x14a2b0 +testing.(*T).Run.gowrap1() + /usr/lib/go-1.22/src/testing/testing.go:1742 +0x30 fp=0x18c4fec sp=0x18c4fe0 pc=0x14b2d4 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x18c4fec sp=0x18c4fec pc=0x95500 +created by testing.(*T).Run in goroutine 1 + /usr/lib/go-1.22/src/testing/testing.go:1742 +0x3c4 + +goroutine 19 gp=0x1884b48 m=nil [select]: +runtime.gopark(0x287608, 0x0, 0x9, 0x3, 0x1) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x18406d8 sp=0x18406c4 pc=0x58c54 +runtime.selectgo(0x18407d4, 0x18407ac, 0x0, 0x0, 0x2, 0x1) + /usr/lib/go-1.22/src/runtime/select.go:327 +0xaf0 fp=0x1840778 sp=0x18406d8 pc=0x6d780 +gopkg.in/check%2ev1.(*resultTracker)._loopRoutine(0x18a00a0) + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:470 +0x80 fp=0x18407e4 sp=0x1840778 pc=0x21db38 +gopkg.in/check%2ev1.(*resultTracker).start.gowrap1() + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:450 +0x28 fp=0x18407ec sp=0x18407e4 pc=0x21da8c +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x18407ec sp=0x18407ec pc=0x95500 +created by gopkg.in/check%2ev1.(*resultTracker).start in goroutine 18 + /build/reproducible-path/golang-github-biogo-biogo-1.0.4/_build/src/gopkg.in/check.v1/check.go:450 +0x58 + +goroutine 22 gp=0x1802c68 m=nil [GC worker (idle)]: +runtime.gopark(0x28748c, 0x1814390, 0x1a, 0xa, 0x0) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x1843f90 sp=0x1843f7c pc=0x58c54 +runtime.gcBgMarkWorker() + /usr/lib/go-1.22/src/runtime/mgc.go:1310 +0xec fp=0x1843fec sp=0x1843f90 pc=0x321a4 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x1843fec sp=0x1843fec pc=0x95500 +created by runtime.gcBgMarkStartWorkers in goroutine 21 + /usr/lib/go-1.22/src/runtime/mgc.go:1234 +0x20 + +goroutine 23 gp=0x1802d88 m=nil [GC worker (idle)]: +runtime.gopark(0x28748c, 0x18f6150, 0x1a, 0xa, 0x0) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x1843790 sp=0x184377c pc=0x58c54 +runtime.gcBgMarkWorker() + /usr/lib/go-1.22/src/runtime/mgc.go:1310 +0xec fp=0x18437ec sp=0x1843790 pc=0x321a4 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x18437ec sp=0x18437ec pc=0x95500 +created by runtime.gcBgMarkStartWorkers in goroutine 21 + /usr/lib/go-1.22/src/runtime/mgc.go:1234 +0x20 + +goroutine 24 gp=0x1802ea8 m=nil [GC worker (idle)]: +runtime.gopark(0x28748c, 0x18f6168, 0x1a, 0xa, 0x0) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x183d790 sp=0x183d77c pc=0x58c54 +runtime.gcBgMarkWorker() + /usr/lib/go-1.22/src/runtime/mgc.go:1310 +0xec fp=0x183d7ec sp=0x183d790 pc=0x321a4 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x183d7ec sp=0x183d7ec pc=0x95500 +created by runtime.gcBgMarkStartWorkers in goroutine 21 + /usr/lib/go-1.22/src/runtime/mgc.go:1234 +0x20 + +goroutine 25 gp=0x1802fc8 m=nil [GC worker (idle)]: +runtime.gopark(0x28748c, 0x18f6180, 0x1a, 0xa, 0x0) + /usr/lib/go-1.22/src/runtime/proc.go:402 +0x104 fp=0x183df90 sp=0x183df7c pc=0x58c54 +runtime.gcBgMarkWorker() + /usr/lib/go-1.22/src/runtime/mgc.go:1310 +0xec fp=0x183dfec sp=0x183df90 pc=0x321a4 +runtime.goexit({}) + /usr/lib/go-1.22/src/runtime/asm_arm.s:859 +0x4 fp=0x183dfec sp=0x183dfec pc=0x95500 +created by runtime.gcBgMarkStartWorkers in goroutine 21 + /usr/lib/go-1.22/src/runtime/mgc.go:1234 +0x20 +FAIL github.com/biogo/biogo/index/kmerindex 17.382s === RUN Test OK: 2 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) PASS -ok github.com/biogo/biogo/io/featio 0.007s +ok github.com/biogo/biogo/io/featio 0.043s === RUN Test OK: 4 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.06s) PASS -ok github.com/biogo/biogo/io/featio/bed 0.011s +ok github.com/biogo/biogo/io/featio/bed 0.089s === RUN Test OK: 5 passed --- PASS: Test (0.00s) PASS -ok github.com/biogo/biogo/io/featio/gff 0.009s +ok github.com/biogo/biogo/io/featio/gff 0.024s === RUN TestSeqio --- PASS: TestSeqio (0.00s) === RUN Test OK: 3 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.04s) PASS -ok github.com/biogo/biogo/io/seqio 0.011s +ok github.com/biogo/biogo/io/seqio 0.082s === RUN Test OK: 2 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.02s) PASS -ok github.com/biogo/biogo/io/seqio/alignio 0.008s +ok github.com/biogo/biogo/io/seqio/alignio 0.065s === RUN Test OK: 2 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.02s) === RUN ExampleReader --- PASS: ExampleReader (0.00s) PASS -ok github.com/biogo/biogo/io/seqio/fasta 0.008s +ok github.com/biogo/biogo/io/seqio/fasta 0.061s === RUN Test OK: 2 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.02s) PASS -ok github.com/biogo/biogo/io/seqio/fastq 0.017s +ok github.com/biogo/biogo/io/seqio/fastq 0.055s === RUN Test OK: 7 passed ---- PASS: Test (10.09s) +--- PASS: Test (12.06s) PASS -ok github.com/biogo/biogo/morass 10.099s +ok github.com/biogo/biogo/morass 12.108s === RUN TestSeq --- PASS: TestSeq (0.00s) PASS -ok github.com/biogo/biogo/seq 0.006s +ok github.com/biogo/biogo/seq 0.031s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) === RUN ExampleNewSeq --- PASS: ExampleNewSeq (0.00s) === RUN ExampleSeq_Add @@ -705,10 +926,10 @@ === RUN ExampleQSeq_truncate --- PASS: ExampleQSeq_truncate (0.00s) PASS -ok github.com/biogo/biogo/seq/alignment 0.013s +ok github.com/biogo/biogo/seq/alignment 0.084s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) === RUN ExampleNewQSeq --- PASS: ExampleNewQSeq (0.00s) === RUN ExampleQSeq_Validate @@ -732,7 +953,7 @@ === RUN ExampleSeq_compose --- PASS: ExampleSeq_compose (0.00s) PASS -ok github.com/biogo/biogo/seq/linear 0.011s +ok github.com/biogo/biogo/seq/linear 0.060s === RUN Test OK: 1 passed --- PASS: Test (0.00s) @@ -765,12 +986,12 @@ === RUN ExampleSet_Len --- PASS: ExampleSet_Len (0.00s) PASS -ok github.com/biogo/biogo/seq/multi 0.012s +ok github.com/biogo/biogo/seq/multi 0.057s === RUN Test OK: 1 passed --- PASS: Test (0.00s) PASS -ok github.com/biogo/biogo/seq/quality 0.007s +ok github.com/biogo/biogo/seq/quality 0.026s === RUN Test OK: 4 passed --- PASS: Test (0.00s) @@ -783,44 +1004,28 @@ === RUN ExampleStitch --- PASS: ExampleStitch (0.00s) PASS -ok github.com/biogo/biogo/seq/sequtils 0.009s +ok github.com/biogo/biogo/seq/sequtils 0.022s === RUN Test OK: 11 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.02s) PASS -ok github.com/biogo/biogo/util 0.016s - create-stamp debian/debhelper-build-stamp - dh_testroot -O--builddirectory=_build -O--buildsystem=golang - dh_prep -O--builddirectory=_build -O--buildsystem=golang - dh_auto_install --destdir=debian/golang-github-biogo-biogo-dev/ -O--builddirectory=_build -O--buildsystem=golang - dh_installdocs -O--builddirectory=_build -O--buildsystem=golang - dh_installchangelogs -O--builddirectory=_build -O--buildsystem=golang - dh_installsystemduser -O--builddirectory=_build -O--buildsystem=golang - dh_perl -O--builddirectory=_build -O--buildsystem=golang - dh_link -O--builddirectory=_build -O--buildsystem=golang - dh_strip_nondeterminism -O--builddirectory=_build -O--buildsystem=golang - dh_compress -O--builddirectory=_build -O--buildsystem=golang - dh_fixperms -O--builddirectory=_build -O--buildsystem=golang - dh_missing -O--builddirectory=_build -O--buildsystem=golang - dh_installdeb -O--builddirectory=_build -O--buildsystem=golang - dh_golang -O--builddirectory=_build -O--buildsystem=golang - dh_gencontrol -O--builddirectory=_build -O--buildsystem=golang - dh_md5sums -O--builddirectory=_build -O--buildsystem=golang - dh_builddeb -O--builddirectory=_build -O--buildsystem=golang -dpkg-deb: building package 'golang-github-biogo-biogo-dev' in '../golang-github-biogo-biogo-dev_1.0.4-1_all.deb'. - dpkg-genbuildinfo --build=binary -O../golang-github-biogo-biogo_1.0.4-1_armhf.buildinfo - dpkg-genchanges --build=binary -O../golang-github-biogo-biogo_1.0.4-1_armhf.changes -dpkg-genchanges: info: binary-only upload (no source code included) - dpkg-source --after-build . -dpkg-buildpackage: info: binary-only upload (no source included) -dpkg-genchanges: info: including full source code in upload +ok github.com/biogo/biogo/util 0.028s +FAIL +dh_auto_test: error: cd _build && go test -vet=off -v -p 4 github.com/biogo/biogo github.com/biogo/biogo/align github.com/biogo/biogo/align/matrix github.com/biogo/biogo/align/pals github.com/biogo/biogo/align/pals/dp github.com/biogo/biogo/align/pals/filter github.com/biogo/biogo/alphabet github.com/biogo/biogo/complexity github.com/biogo/biogo/concurrent github.com/biogo/biogo/errors github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/feat/genome github.com/biogo/biogo/feat/genome/cow/bt7 github.com/biogo/biogo/feat/genome/drosophila/dm3 github.com/biogo/biogo/feat/genome/human/hg19 github.com/biogo/biogo/feat/genome/mouse/mm10 github.com/biogo/biogo/index/kmerindex github.com/biogo/biogo/io/featio github.com/biogo/biogo/io/featio/bed github.com/biogo/biogo/io/featio/gff github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/alignio github.com/biogo/biogo/io/seqio/fai github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/biogo/morass github.com/biogo/biogo/pwm github.com/biogo/biogo/seq github.com/biogo/biogo/seq/alignment github.com/biogo/biogo/seq/linear github.com/biogo/biogo/seq/multi github.com/biogo/biogo/seq/quality github.com/biogo/biogo/seq/sequtils github.com/biogo/biogo/util returned exit code 1 +make: *** [debian/rules:4: binary] Error 25 +dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration +E: Failed autobuilding of package +I: user script /srv/workspace/pbuilder/10736/tmp/hooks/C01_cleanup starting +debug output: disk usage on i-capture-the-hostname at Fri Apr 19 16:48:44 UTC 2024 +Filesystem Size Used Avail Use% Mounted on +tmpfs 7.7G 0 7.7G 0% /dev/shm + +I: user script /srv/workspace/pbuilder/10736/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/8654 and its subdirectories -I: Current time: Fri Apr 19 04:46:22 -12 2024 -I: pbuilder-time-stamp: 1713545182 +I: removing directory /srv/workspace/pbuilder/10736 and its subdirectories