Diff of the two buildlogs: -- --- b1/build.log 2024-12-31 01:24:46.991261531 +0000 +++ b2/build.log 2024-12-31 01:31:21.417278580 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 30 13:20:04 -12 2024 -I: pbuilder-time-stamp: 1735608004 +I: Current time: Tue Dec 31 15:25:08 +14 2024 +I: pbuilder-time-stamp: 1735608308 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/22061/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6801/tmp/hooks/D01_modify_environment starting +debug: Running on virt32a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 31 01:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6801/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6801/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='0b5a07da661e462fac9fb8104d273f0d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='22061' - PS1='# ' - PS2='> ' + INVOCATION_ID=ad2f5ccbb74344fda8a20baf7aed8448 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6801 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cawGbRFM/pbuilderrc_e4Hi --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cawGbRFM/b1 --logfile b1/build.log fenicsx-performance-tests_0.9.0-2.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cawGbRFM/pbuilderrc_kyoo --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cawGbRFM/b2 --logfile b2/build.log fenicsx-performance-tests_0.9.0-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64z 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/22061/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/6801/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -411,7 +443,7 @@ Get: 289 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 75.6.0-1 [720 kB] Get: 290 http://deb.debian.org/debian trixie/main armhf python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 291 http://deb.debian.org/debian trixie/main armhf libdolfinx-dev armhf 1:0.9.0-5+b1 [202 kB] -Fetched 182 MB in 26s (7043 kB/s) +Fetched 182 MB in 4s (50.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19680 files and directories currently installed.) @@ -1349,8 +1381,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Dec 31 01:21:50 UTC 2024. -Universal Time is now: Tue Dec 31 01:21:50 UTC 2024. +Local time is now: Tue Dec 31 01:27:09 UTC 2024. +Universal Time is now: Tue Dec 31 01:27:09 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:armhf (1.83.0-4) ... @@ -1645,7 +1677,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes +I: user script /srv/workspace/pbuilder/6801/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/6801/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.9.0-2 dpkg-buildpackage: info: source distribution unstable @@ -1728,7 +1764,7 @@ -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall --- Configuring done (4.8s) +-- Configuring done (7.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -1741,7 +1777,7 @@ -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -1749,7 +1785,7 @@ make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' -[ 9%] Generating Poisson.c +[ 18%] Generating Poisson.c [ 18%] Generating Elasticity.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Poisson.py @@ -1757,12 +1793,14 @@ make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' -[ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o [ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -[ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o +[ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o +[ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/main.cpp -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mesh.cpp +[ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mesh.cpp +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp In file included from /usr/include/c++/14/vector:72, from /usr/include/c++/14/chrono:47, from /usr/include/spdlog/common.h:10, @@ -1834,6 +1872,21 @@ 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp: In function 'void {anonymous}::unpack_fn(std::span, std::span, std::span, std::function)': +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:39:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 39 | void unpack_fn(std::span in, std::span idx, + | ^~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:39:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /usr/include/basix/finite-element.h:12, + from /usr/include/dolfinx/fem/FiniteElement.h:11, + from /usr/include/dolfinx/fem/Function.h:10, + from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.h:9, + from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:7: +/usr/include/basix/precompute.h: In function 'void basix::precompute::apply_matrix(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': +/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 243 | void apply_matrix( + | ^~~~~~~~~~~~ +/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 In file included from /usr/include/c++/14/bits/stl_algo.h:61: /usr/include/c++/14/bits/stl_heap.h: In function 'constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = tuple; _Compare = __gnu_cxx::__ops::_Iter_comp_iter(std::ranges::less&, std::identity&):: >]': /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 @@ -1885,8 +1938,8 @@ 285 | void apply_tranpose_matrix_right( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/basix/precompute.h:285:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -[ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp +[ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp /usr/include/basix/precompute.h: In function 'void basix::precompute::apply_matrix(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': /usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 243 | void apply_matrix( @@ -1942,6 +1995,11 @@ 73 | mesh::Mesh mesh1 = mesh::create_mesh( | ^~~~~ /usr/include/dolfinx/refinement/refine.h:73:17: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:14: +/usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': +/usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 495 | void set(std::span x, std::optional> x0, + | ^~~ In member function 'constexpr std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, std::initializer_list<_Tp>) [with _Tp = long long int; _Alloc = std::allocator]', inlined from 'dolfinx::mesh::Mesh dolfinx::mesh::impl::build_tet(MPI_Comm, MPI_Comm, std::array, 2>, std::array, const dolfinx::mesh::CellPartitionFunction&) [with T = double]' at /usr/include/dolfinx/mesh/generation.h:379:19: /usr/include/c++/14/bits/stl_vector.h:1416:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -1954,6 +2012,11 @@ 386 | {x.size() / 3, 3}, partitioner); | ^ /usr/include/dolfinx/mesh/generation.h:386:52: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /usr/include/dolfinx/fem/Function.h:12: +/usr/include/dolfinx/fem/interpolate.h: In function 'std::vector dolfinx::fem::interpolation_coords(const FiniteElement&, const dolfinx::mesh::Geometry&, std::span) [with T = double]': +/usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 72 | cmap.tabulate(0, X, Xshape, phi_b); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:11: /usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': /usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 @@ -1979,8 +2042,15 @@ /usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 72 | cmap.tabulate(0, X, Xshape, phi_b); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp +In file included from /usr/include/dolfinx/fem/assemble_matrix_impl.h:13, + from /usr/include/dolfinx/fem/assembler.h:9, + from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:17: +/usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, IntegralType, int, std::span<_Type, 4294967295>, int) [with T = double; U = double]': +/usr/include/dolfinx/fem/utils.h:1062:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1062 | void pack_coefficients(const Form& form, IntegralType integral_type, + | ^~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mem.cpp In file included from /usr/include/dolfinx/fem/assemble_matrix_impl.h:13, from /usr/include/dolfinx/fem/assembler.h:9, from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:16: @@ -1993,6 +2063,51 @@ 1305 | pack_coefficients(form, key.first, key.second, val.first, val.second); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /usr/include/dolfinx/fem/CoordinateElement.h:17, + from /usr/include/dolfinx/fem/FunctionSpace.h:9, + from /usr/include/dolfinx/fem/Function.h:11: +/usr/include/dolfinx/common/math.h: In function 'auto dolfinx::math::det(Matrix) [with Matrix = std::mdspan, std::layout_right, std::default_accessor >]': +/usr/include/dolfinx/common/math.h:87:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 87 | auto det(Matrix A) + | ^~~ +/usr/include/dolfinx/fem/CoordinateElement.h: In static member function 'static double dolfinx::fem::CoordinateElement::compute_jacobian_determinant(const U&, std::span) [with U = std::mdspan, std::layout_right, std::default_accessor >; T = double]': +/usr/include/dolfinx/fem/CoordinateElement.h:152:3: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 152 | compute_jacobian_determinant(const U& J, std::span w) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': +/usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 125 | void inv(U A, V B) + | ^~~ +/usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 +/usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::pinv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': +/usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 212 | void pinv(U A, V P) + | ^~~~ +/usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 +/usr/include/dolfinx/common/math.h:246:8: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 246 | inv(ATA, Inv); + | ~~~^~~~~~~~~~ +/usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, std::map, std::pair, int> >&) [with T = double; U = double]': +/usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1305 | pack_coefficients(form, key.first, key.second, val.first, val.second); + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +/usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]': +/usr/include/dolfinx/fem/interpolate.h:703:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 703 | void interpolate(Function& u, std::span f, + | ^~~~~~~~~~~ +/usr/include/dolfinx/fem/interpolate.h:954:18: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 954 | cmap.tabulate(1, X, Xshape, phi_b); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/interpolate.h:1008:52: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1008 | detJ[p] = cmap.compute_jacobian_determinant(_J, det_scratch); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In static member function 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >&; T = double]', + inlined from 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]' at /usr/include/dolfinx/fem/interpolate.h:1007:38: +/usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 142 | math::pinv(J, K); + | ~~~~~~~~~~^~~~~~ +/usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 /usr/include/basix/finite-element.h: In member function 'void basix::FiniteElement::transform_data(std::span, int, uint32_t, const std::map, std::pair, std::array > > > >&, OP) const [with T = double; bool post = false; OP = void (*)(std::span, std::mdspan, std::layout_right, std::default_accessor >, std::span, unsigned int, unsigned int); F = double]': /usr/include/basix/finite-element.h:1733:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 1733 | void FiniteElement::transform_data( @@ -2147,198 +2262,12 @@ /usr/include/dolfinx/fem/CoordinateElement.h:152:3: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 152 | compute_jacobian_determinant(const U& J, std::span w) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': -/usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 125 | void inv(U A, V B) - | ^~~ -/usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 -/usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::pinv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': -/usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 212 | void pinv(U A, V P) - | ^~~~ -/usr/include/dolfinx/common/math.h:212:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 -/usr/include/dolfinx/common/math.h:246:8: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 246 | inv(ATA, Inv); - | ~~~^~~~~~~~~~ -/usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]': -/usr/include/dolfinx/fem/interpolate.h:703:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 703 | void interpolate(Function& u, std::span f, - | ^~~~~~~~~~~ -/usr/include/dolfinx/fem/interpolate.h:954:18: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 954 | cmap.tabulate(1, X, Xshape, phi_b); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/interpolate.h:1008:52: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1008 | detJ[p] = cmap.compute_jacobian_determinant(_J, det_scratch); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In static member function 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >&; T = double]', - inlined from 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double; U = double]' at /usr/include/dolfinx/fem/interpolate.h:1007:38: -/usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 142 | math::pinv(J, K); - | ~~~~~~~~~~^~~~~~ -/usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 /usr/include/dolfinx/fem/Function.h: In member function 'void dolfinx::fem::Function::interpolate(const std::function, std::vector >(std::mdspan >)>&, std::span) [with T = double; U = double]': /usr/include/dolfinx/fem/Function.h:234:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 234 | fem::interpolate(*this, std::span(fx.data(), fx.size()), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | _fshape, cells); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/dolfinx/fem/assembler.h:11: -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:1147:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1147 | void assemble_vector( - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp: In function 'void {anonymous}::unpack_fn(std::span, std::span, std::span, std::function)': -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:39:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 39 | void unpack_fn(std::span in, std::span idx, - | ^~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:39:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -In file included from /usr/include/basix/finite-element.h:12, - from /usr/include/dolfinx/fem/FiniteElement.h:11, - from /usr/include/dolfinx/fem/Function.h:10, - from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.h:9, - from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:7: -/usr/include/basix/precompute.h: In function 'void basix::precompute::apply_matrix(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': -/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 243 | void apply_matrix( - | ^~~~~~~~~~~~ -/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_exterior_facets(std::span<_Type, 4294967295>, mdspan2_t, std::span >, int, auto:188, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:189, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:190, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, T, std::span) [with T = double; int _bs = -1; auto:188 = std::function; auto:189 = std::function, std::span, int, int)>; auto:190 = std::function, std::span, int, int)>]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:263:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 263 | void _lift_bc_exterior_facets( - | ^~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_cells(std::span<_Type, 4294967295>, mdspan2_t, std::span >, auto:185, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:186, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:187, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, T) [with T = double; int _bs0 = -1; int _bs1 = -1; auto:185 = std::function; auto:186 = std::function, std::span, int, int)>; auto:187 = std::function, std::span, int, int)>]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:76:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 76 | void _lift_bc_cells( - | ^~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_interior_facets(std::span<_Type, 4294967295>, mdspan2_t, std::span >, int, auto:191, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:192, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:193, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, std::span, T) [with T = double; int _bs = -1; auto:191 = std::function; auto:192 = std::function, std::span, int, int)>; auto:193 = std::function, std::span, int, int)>]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:412:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 412 | void _lift_bc_interior_facets( - | ^~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::lift_bc(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&, std::span, std::span, std::span, T) [with T = double; U = double]': -/usr/include/dolfinx/fem/assemble_vector_impl.h:929:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 929 | void lift_bc(std::span b, const Form& a, mdspan2_t x_dofmap, - | ^~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:929:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -/usr/include/dolfinx/fem/assemble_vector_impl.h:1003:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1003 | _lift_bc_cells(b, x_dofmap, x, kernel, cells, - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1004 | {dofmap0, bs0, a.domain(IntegralType::cell, i, *mesh0)}, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1005 | P0, - | ~~~ - 1006 | {dofmap1, bs1, a.domain(IntegralType::cell, i, *mesh1)}, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1007 | P1T, constants, coeffs, cstride, cell_info0, cell_info1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1008 | bc_values1, bc_markers1, x0, alpha); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1028:29: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1028 | _lift_bc_exterior_facets( - | ~~~~~~~~~~~~~~~~~~~~~~~~^ - 1029 | b, x_dofmap, x, num_facets_per_cell, kernel, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1030 | a.domain(IntegralType::exterior_facet, i), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1031 | {dofmap0, bs0, a.domain(IntegralType::exterior_facet, i, *mesh0)}, P0, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1032 | {dofmap1, bs1, a.domain(IntegralType::exterior_facet, i, *mesh1)}, P1T, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1033 | constants, coeffs, cstride, cell_info0, cell_info1, bc_values1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1034 | bc_markers1, x0, alpha, perms); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1043:29: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1043 | _lift_bc_interior_facets( - | ~~~~~~~~~~~~~~~~~~~~~~~~^ - 1044 | b, x_dofmap, x, num_facets_per_cell, kernel, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1045 | a.domain(IntegralType::interior_facet, i), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1046 | {dofmap0, bs0, a.domain(IntegralType::interior_facet, i, *mesh0)}, P0, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1047 | {dofmap1, bs1, a.domain(IntegralType::interior_facet, i, *mesh1)}, P1T, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1048 | constants, coeffs, cstride, cell_info0, cell_info1, perms, bc_values1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1049 | bc_markers1, x0, alpha); - | ~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:14: -/usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': -/usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 495 | void set(std::span x, std::optional> x0, - | ^~~ -In function 'void dolfinx::fem::impl::apply_lifting(std::span<_Type, 4294967295>, std::vector > >, const std::vector >&, const std::vector, std::pair, int> > >&, const std::vector > > >&, const std::vector >&, T) [with T = double; U = double]', - inlined from 'void dolfinx::fem::apply_lifting(std::span<_Type, 4294967295>, const std::vector > >&, const std::vector >&, const std::vector, std::pair, int> > >&, const std::vector > > >&, const std::vector >&, T) [with T = double; U = double]' at /usr/include/dolfinx/fem/assembler.h:165:25: -/usr/include/dolfinx/fem/assemble_vector_impl.h:1121:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1121 | bc->set(bc_values1, std::nullopt, 1); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1126:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1126 | lift_bc(b, *a[j], x_dofmap, x, constants[j], coeffs[j], bc_values1, - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1127 | bc_markers1, x0[j], alpha); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1126:19: note: parameter passing for argument of type 'const std::span' changed in GCC 7.1 -/usr/include/dolfinx/fem/assemble_vector_impl.h:1131:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1131 | lift_bc(b, *a[j], x_dofmap, x, constants[j], coeffs[j], bc_values1, - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1132 | bc_markers1, std::span(), alpha); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/assemble_vector_impl.h:1131:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -In file included from /usr/include/dolfinx/fem/Function.h:12: -/usr/include/dolfinx/fem/interpolate.h: In function 'std::vector dolfinx::fem::interpolation_coords(const FiniteElement&, const dolfinx::mesh::Geometry&, std::span) [with T = double]': -/usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 72 | cmap.tabulate(0, X, Xshape, phi_b); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]', - inlined from 'void dolfinx::fem::assemble_vector(std::span<_Type, 4294967295>, const Form&, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]' at /usr/include/dolfinx/fem/assembler.h:116:24, - inlined from 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > elastic::problem(std::shared_ptr >, int)' at /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:216:26: -/usr/include/dolfinx/fem/assemble_vector_impl.h:1297:20: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1297 | assemble_vector(b, L, mesh->geometry().dofmap(), mesh->geometry().x(), - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1298 | constants, coefficients); - | ~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp: In function 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > elastic::problem(std::shared_ptr >, int)': -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:222:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 222 | bc->set(b.mutable_array(), std::nullopt); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/basix/finite-element.h:12, - from /usr/include/dolfinx/fem/FiniteElement.h:11, - from /usr/include/dolfinx/fem/Function.h:10, - from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.h:9, - from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp:7: -/usr/include/basix/precompute.h: In function 'void basix::precompute::apply_tranpose_matrix_right(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': -/usr/include/basix/precompute.h:285:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 285 | void apply_tranpose_matrix_right( - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/basix/precompute.h:285:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -/usr/include/basix/precompute.h: In function 'void basix::precompute::apply_matrix(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': -/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 243 | void apply_matrix( - | ^~~~~~~~~~~~ -/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -In file included from /usr/include/dolfinx/fem/assemble_matrix_impl.h:13, - from /usr/include/dolfinx/fem/assembler.h:9, - from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:17: -/usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, IntegralType, int, std::span<_Type, 4294967295>, int) [with T = double; U = double]': -/usr/include/dolfinx/fem/utils.h:1062:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1062 | void pack_coefficients(const Form& form, IntegralType integral_type, - | ^~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, std::map, std::pair, int> >&) [with T = double; U = double]': -/usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 1305 | pack_coefficients(form, key.first, key.second, val.first, val.second); - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 -In file included from /usr/include/dolfinx/fem/CoordinateElement.h:17, - from /usr/include/dolfinx/fem/FunctionSpace.h:9, - from /usr/include/dolfinx/fem/Function.h:11: -/usr/include/dolfinx/common/math.h: In function 'auto dolfinx::math::det(Matrix) [with Matrix = std::mdspan, std::layout_right, std::default_accessor >]': -/usr/include/dolfinx/common/math.h:87:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 - 87 | auto det(Matrix A) - | ^~~ -/usr/include/dolfinx/fem/CoordinateElement.h: In static member function 'static double dolfinx::fem::CoordinateElement::compute_jacobian_determinant(const U&, std::span) [with U = std::mdspan, std::layout_right, std::default_accessor >; T = double]': -/usr/include/dolfinx/fem/CoordinateElement.h:152:3: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 152 | compute_jacobian_determinant(const U& J, std::span w) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::mdspan, std::layout_right, std::default_accessor >; V = std::mdspan, std::layout_right, std::default_accessor >]': /usr/include/dolfinx/common/math.h:125:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 125 | void inv(U A, V B) @@ -2368,24 +2297,14 @@ 142 | math::pinv(J, K); | ~~~~~~~~~~^~~~~~ /usr/include/dolfinx/fem/CoordinateElement.h:142:17: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 +[ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o +/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/Elasticity.c /usr/include/dolfinx/fem/Function.h: In member function 'void dolfinx::fem::Function::interpolate(const std::function, std::vector >(std::mdspan >)>&, std::span) [with T = double; U = double]': /usr/include/dolfinx/fem/Function.h:234:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 234 | fem::interpolate(*this, std::span(fx.data(), fx.size()), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | _fshape, cells); | ~~~~~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mem.cpp -In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp:12: -/usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': -/usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 495 | void set(std::span x, std::optional> x0, - | ^~~ -In file included from /usr/include/dolfinx/fem/Function.h:12: -/usr/include/dolfinx/fem/interpolate.h: In function 'std::vector dolfinx::fem::interpolation_coords(const FiniteElement&, const dolfinx::mesh::Geometry&, std::span) [with T = double]': -/usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 72 | cmap.tabulate(0, X, Xshape, phi_b); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/dolfinx/fem/assembler.h:11: /usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]': /usr/include/dolfinx/fem/assemble_vector_impl.h:1147:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 @@ -2497,6 +2416,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1869 | precompute::apply_matrix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/dolfinx/fem/assembler.h:11: +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:1147:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1147 | void assemble_vector( + | ^~~~~~~~~~~~~~~ /usr/include/dolfinx/fem/assembler.h: In function 'void dolfinx::fem::assemble_vector(std::span<_Type, 4294967295>, const Form&) [with T = double; U = double]': /usr/include/dolfinx/fem/assembler.h:124:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 124 | void assemble_vector(std::span b, const Form& L) @@ -2515,6 +2439,127 @@ | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 | [](T /*a*/, T b) { return b; }); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp: In function 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > cgpoisson::problem(std::shared_ptr >, int, std::string)': +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:154:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 154 | bc->set(un->x()->mutable_array(), std::nullopt, -1.0); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:154:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +In file included from /usr/include/basix/finite-element.h:12, + from /usr/include/dolfinx/fem/FiniteElement.h:11, + from /usr/include/dolfinx/fem/Function.h:10, + from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.h:9, + from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp:7: +/usr/include/basix/precompute.h: In function 'void basix::precompute::apply_tranpose_matrix_right(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': +/usr/include/basix/precompute.h:285:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 285 | void apply_tranpose_matrix_right( + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/basix/precompute.h:285:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +/usr/include/basix/precompute.h: In function 'void basix::precompute::apply_matrix(std::span, std::mdspan >, std::span, std::size_t, std::size_t) [with T = double; E = double]': +/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::mdspan, std::layout_right, std::default_accessor >' changed in GCC 7.1 + 243 | void apply_matrix( + | ^~~~~~~~~~~~ +/usr/include/basix/precompute.h:243:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_exterior_facets(std::span<_Type, 4294967295>, mdspan2_t, std::span >, int, auto:188, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:189, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:190, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, T, std::span) [with T = double; int _bs = -1; auto:188 = std::function; auto:189 = std::function, std::span, int, int)>; auto:190 = std::function, std::span, int, int)>]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:263:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 263 | void _lift_bc_exterior_facets( + | ^~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_cells(std::span<_Type, 4294967295>, mdspan2_t, std::span >, auto:185, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:186, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:187, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, T) [with T = double; int _bs0 = -1; int _bs1 = -1; auto:185 = std::function; auto:186 = std::function, std::span, int, int)>; auto:187 = std::function, std::span, int, int)>]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:76:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 76 | void _lift_bc_cells( + | ^~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::_lift_bc_interior_facets(std::span<_Type, 4294967295>, mdspan2_t, std::span >, int, auto:191, std::span, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:192, std::tuple, std::layout_right, std::default_accessor >, int, std::span >, auto:193, std::span, std::span, int, std::span, std::span, std::span, std::span, std::span, std::span, T) [with T = double; int _bs = -1; auto:191 = std::function; auto:192 = std::function, std::span, int, int)>; auto:193 = std::function, std::span, int, int)>]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:412:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 412 | void _lift_bc_interior_facets( + | ^~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::lift_bc(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&, std::span, std::span, std::span, T) [with T = double; U = double]': +/usr/include/dolfinx/fem/assemble_vector_impl.h:929:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 929 | void lift_bc(std::span b, const Form& a, mdspan2_t x_dofmap, + | ^~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:929:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +/usr/include/dolfinx/fem/assemble_vector_impl.h:1003:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1003 | _lift_bc_cells(b, x_dofmap, x, kernel, cells, + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1004 | {dofmap0, bs0, a.domain(IntegralType::cell, i, *mesh0)}, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1005 | P0, + | ~~~ + 1006 | {dofmap1, bs1, a.domain(IntegralType::cell, i, *mesh1)}, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1007 | P1T, constants, coeffs, cstride, cell_info0, cell_info1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1008 | bc_values1, bc_markers1, x0, alpha); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1028:29: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1028 | _lift_bc_exterior_facets( + | ~~~~~~~~~~~~~~~~~~~~~~~~^ + 1029 | b, x_dofmap, x, num_facets_per_cell, kernel, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1030 | a.domain(IntegralType::exterior_facet, i), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1031 | {dofmap0, bs0, a.domain(IntegralType::exterior_facet, i, *mesh0)}, P0, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1032 | {dofmap1, bs1, a.domain(IntegralType::exterior_facet, i, *mesh1)}, P1T, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1033 | constants, coeffs, cstride, cell_info0, cell_info1, bc_values1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1034 | bc_markers1, x0, alpha, perms); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1043:29: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1043 | _lift_bc_interior_facets( + | ~~~~~~~~~~~~~~~~~~~~~~~~^ + 1044 | b, x_dofmap, x, num_facets_per_cell, kernel, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1045 | a.domain(IntegralType::interior_facet, i), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1046 | {dofmap0, bs0, a.domain(IntegralType::interior_facet, i, *mesh0)}, P0, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1047 | {dofmap1, bs1, a.domain(IntegralType::interior_facet, i, *mesh1)}, P1T, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1048 | constants, coeffs, cstride, cell_info0, cell_info1, perms, bc_values1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1049 | bc_markers1, x0, alpha); + | ~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void dolfinx::fem::impl::apply_lifting(std::span<_Type, 4294967295>, std::vector > >, const std::vector >&, const std::vector, std::pair, int> > >&, const std::vector > > >&, const std::vector >&, T) [with T = double; U = double]', + inlined from 'void dolfinx::fem::apply_lifting(std::span<_Type, 4294967295>, const std::vector > >&, const std::vector >&, const std::vector, std::pair, int> > >&, const std::vector > > >&, const std::vector >&, T) [with T = double; U = double]' at /usr/include/dolfinx/fem/assembler.h:165:25: +/usr/include/dolfinx/fem/assemble_vector_impl.h:1121:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1121 | bc->set(bc_values1, std::nullopt, 1); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1126:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1126 | lift_bc(b, *a[j], x_dofmap, x, constants[j], coeffs[j], bc_values1, + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1127 | bc_markers1, x0[j], alpha); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1126:19: note: parameter passing for argument of type 'const std::span' changed in GCC 7.1 +/usr/include/dolfinx/fem/assemble_vector_impl.h:1131:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1131 | lift_bc(b, *a[j], x_dofmap, x, constants[j], coeffs[j], bc_values1, + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1132 | bc_markers1, std::span(), alpha); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/dolfinx/fem/assemble_vector_impl.h:1131:19: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 +[ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o +/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/Poisson.c +In file included from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp:12: +/usr/include/dolfinx/fem/DirichletBC.h: In member function 'void dolfinx::fem::DirichletBC::set(std::span<_Type, 4294967295>, std::optional >, T) const [with T = double; U = double]': +/usr/include/dolfinx/fem/DirichletBC.h:495:8: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 495 | void set(std::span x, std::optional> x0, + | ^~~ +In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]', + inlined from 'void dolfinx::fem::assemble_vector(std::span<_Type, 4294967295>, const Form&, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]' at /usr/include/dolfinx/fem/assembler.h:116:24, + inlined from 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > elastic::problem(std::shared_ptr >, int)' at /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:216:26: +/usr/include/dolfinx/fem/assemble_vector_impl.h:1297:20: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 1297 | assemble_vector(b, L, mesh->geometry().dofmap(), mesh->geometry().x(), + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1298 | constants, coefficients); + | ~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp: In function 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > elastic::problem(std::shared_ptr >, int)': +/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp:222:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 222 | bc->set(b.mutable_array(), std::nullopt); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/dolfinx/fem/Function.h:12: +/usr/include/dolfinx/fem/interpolate.h: In function 'std::vector dolfinx::fem::interpolation_coords(const FiniteElement&, const dolfinx::mesh::Geometry&, std::span) [with T = double]': +/usr/include/dolfinx/fem/interpolate.h:72:16: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 + 72 | cmap.tabulate(0, X, Xshape, phi_b); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/dolfinx/fem/assemble_matrix_impl.h:13, from /usr/include/dolfinx/fem/assembler.h:9, from /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp:16: @@ -2522,13 +2567,6 @@ /usr/include/dolfinx/fem/utils.h:1062:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 1062 | void pack_coefficients(const Form& form, IntegralType integral_type, | ^~~~~~~~~~~~~~~~~ -[ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/Elasticity.c -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp: In function 'std::tuple > > >, std::shared_ptr >, std::function&, const dolfinx::la::Vector > >&)> > cgpoisson::problem(std::shared_ptr >, int, std::string)': -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:154:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 - 154 | bc->set(un->x()->mutable_array(), std::nullopt, -1.0); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp:154:10: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 /usr/include/dolfinx/fem/utils.h: In function 'void dolfinx::fem::pack_coefficients(const Form&, std::map, std::pair, int> >&) [with T = double; U = double]': /usr/include/dolfinx/fem/utils.h:1305:25: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 1305 | pack_coefficients(form, key.first, key.second, val.first, val.second); @@ -2580,8 +2618,6 @@ | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | _fshape, cells); | ~~~~~~~~~~~~~~~ -[ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.22/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.22/arm-linux-gnueabihf-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/Poisson.c In file included from /usr/include/dolfinx/fem/assembler.h:11: /usr/include/dolfinx/fem/assemble_vector_impl.h: In function 'void dolfinx::fem::impl::assemble_vector(std::span<_Type, 4294967295>, const dolfinx::fem::Form&, mdspan2_t, std::span >, std::span, const std::map, std::pair, int> >&) [with T = double; U = double]': /usr/include/dolfinx/fem/assemble_vector_impl.h:1147:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 @@ -2832,67 +2868,67 @@ make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf ==== elasticity weak scaling (3 processes with ndofs=10000) ==== -[2024-12-30 13:23:48.350] [RANK: 0] [info] Using partitioner with 69312 cell data -[2024-12-30 13:23:48.351] [RANK: 0] [info] Compute partition of cells across ranks -[2024-12-30 13:23:48.351] [RANK: 0] [info] Building mesh dual graph -[2024-12-30 13:23:48.351] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-12-30 13:23:48.381] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-12-30 13:23:48.381] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:48.382] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:23:48.382] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-12-30 13:23:48.383] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) -[2024-12-30 13:23:48.383] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-12-30 13:23:53.706] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-12-30 13:23:53.708] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-12-30 13:23:53.712] [RANK: 0] [info] Extract basic topology: 69412->69412 -[2024-12-30 13:23:53.712] [RANK: 0] [info] Build local dual graph -[2024-12-30 13:23:53.712] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-12-30 13:23:53.743] [RANK: 0] [info] GPS pseudo-diameter:(80) 64-17258 -[2024-12-30 13:23:53.747] [RANK: 0] [info] Create topology (single cell type) -[2024-12-30 13:23:53.747] [RANK: 0] [info] Create topology (generalised) -[2024-12-30 13:23:53.751] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-12-30 13:23:53.751] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-12-30 13:23:53.758] [RANK: 0] [info] Compute ghost indices -[2024-12-30 13:23:53.758] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-12-30 13:23:53.758] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-12-30 13:23:53.760] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-12-30 13:23:53.760] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-12-30 13:23:53.769] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:53.769] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:23:53.769] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:53.769] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:23:53.773] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-12-30 13:23:53.773] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-12-30 13:23:53.773] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-12-30 13:23:53.774] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:53.774] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:23:53.774] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-12-30 13:23:53.774] [RANK: 0] [info] Checking required entities per dimension -[2024-12-30 13:23:53.774] [RANK: 0] [info] Cell type: 0 dofmap: 17353x4 -[2024-12-30 13:23:53.779] [RANK: 0] [info] Global index computation -[2024-12-30 13:23:53.779] [RANK: 0] [info] Got 1 index_maps -[2024-12-30 13:23:53.779] [RANK: 0] [info] Get global indices -[2024-12-30 13:23:53.780] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:53.780] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:05.570] [RANK: 0] [info] Using partitioner with 69312 cell data +[2024-12-31 15:30:05.572] [RANK: 0] [info] Compute partition of cells across ranks +[2024-12-31 15:30:05.572] [RANK: 0] [info] Building mesh dual graph +[2024-12-31 15:30:05.572] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-12-31 15:30:05.616] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2024-12-31 15:30:05.621] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:05.621] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:05.621] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2024-12-31 15:30:05.623] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) +[2024-12-31 15:30:05.623] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2024-12-31 15:30:10.972] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-12-31 15:30:10.978] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-12-31 15:30:10.983] [RANK: 0] [info] Extract basic topology: 68868->68868 +[2024-12-31 15:30:10.983] [RANK: 0] [info] Build local dual graph +[2024-12-31 15:30:10.983] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-12-31 15:30:11.023] [RANK: 0] [info] GPS pseudo-diameter:(120) 15939-543 +[2024-12-31 15:30:11.028] [RANK: 0] [info] Create topology (single cell type) +[2024-12-31 15:30:11.028] [RANK: 0] [info] Create topology (generalised) +[2024-12-31 15:30:11.042] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-12-31 15:30:11.042] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-12-31 15:30:11.050] [RANK: 0] [info] Compute ghost indices +[2024-12-31 15:30:11.051] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2024-12-31 15:30:11.051] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:11.053] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-12-31 15:30:11.053] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:11.061] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:11.062] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:11.062] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:11.062] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:11.067] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-12-31 15:30:11.067] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:11.067] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2024-12-31 15:30:11.067] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:11.067] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:11.067] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2024-12-31 15:30:11.068] [RANK: 0] [info] Checking required entities per dimension +[2024-12-31 15:30:11.068] [RANK: 0] [info] Cell type: 0 dofmap: 17217x4 +[2024-12-31 15:30:11.075] [RANK: 0] [info] Global index computation +[2024-12-31 15:30:11.075] [RANK: 0] [info] Got 1 index_maps +[2024-12-31 15:30:11.076] [RANK: 0] [info] Get global indices +[2024-12-31 15:30:11.076] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:11.076] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times -[2024-12-30 13:23:53.782] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-12-30 13:23:53.817] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:53.818] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:23:53.874] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:53.874] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:23:53.875] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-12-30 13:23:53.875] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-12-30 13:23:53.877] [RANK: 0] [info] Checking required entities per dimension -[2024-12-30 13:23:53.877] [RANK: 0] [info] Cell type: 0 dofmap: 17353x4 -[2024-12-30 13:23:53.882] [RANK: 0] [info] Global index computation -[2024-12-30 13:23:53.882] [RANK: 0] [info] Got 1 index_maps -[2024-12-30 13:23:53.882] [RANK: 0] [info] Get global indices -[2024-12-30 13:23:53.883] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:53.883] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:23:53.883] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-12-30 13:23:53.884] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-12-30 13:23:53.884] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-12-30 13:23:53.913] [RANK: 0] [info] Column ghost size increased from 220 to 549 +[2024-12-31 15:30:11.080] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2024-12-31 15:30:11.128] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:11.129] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:11.200] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:11.200] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:11.203] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-12-31 15:30:11.203] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2024-12-31 15:30:11.205] [RANK: 0] [info] Checking required entities per dimension +[2024-12-31 15:30:11.205] [RANK: 0] [info] Cell type: 0 dofmap: 17217x4 +[2024-12-31 15:30:11.212] [RANK: 0] [info] Global index computation +[2024-12-31 15:30:11.212] [RANK: 0] [info] Got 1 index_maps +[2024-12-31 15:30:11.212] [RANK: 0] [info] Get global indices +[2024-12-31 15:30:11.215] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:11.215] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:11.216] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-12-31 15:30:11.216] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-12-31 15:30:11.216] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2024-12-31 15:30:11.257] [RANK: 0] [info] Column ghost size increased from 217 to 532 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -2906,7 +2942,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -[2024-12-30 13:23:54.179] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2024-12-31 15:30:11.676] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -2927,11 +2963,11 @@ MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 - Complexity: grid = 1.0948 operator = 1.3904 + Complexity: grid = 1.0946 operator = 1.38893 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int - 246 1 193 0 - 2598 3 170 39 + 234 1 182 0 + 2604 3 171 36 30000 3 42 22 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes @@ -2957,35 +2993,35 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.1384 + factor fill ratio given 5., needed 1.12234 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=246, cols=246, bs=6 + rows=234, cols=234, bs=6 package used to perform factorization: petsc - total: nonzeros=53892, allocated nonzeros=53892 - using I-node routines: found 67 nodes, limit used is 5 + total: nonzeros=47556, allocated nonzeros=47556 + using I-node routines: found 65 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=246, cols=246, bs=6 - total: nonzeros=47340, allocated nonzeros=47340 + rows=234, cols=234, bs=6 + total: nonzeros=42372, allocated nonzeros=42372 total number of mallocs used during MatSetValues calls=0 - using I-node routines: found 82 nodes, limit used is 5 + using I-node routines: found 77 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=246, cols=246, bs=6 - total: nonzeros=47340, allocated nonzeros=47340 + rows=234, cols=234, bs=6 + total: nonzeros=42372, allocated nonzeros=42372 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 82 nodes, limit used is 5 + using I-node (on process 0) routines: found 77 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.31485, max 3.46335 - eigenvalues provided (min 0.00933006, max 3.1485) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.274417, max 3.01858 + eigenvalues provided (min 0.0408453, max 2.74417) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2996,18 +3032,18 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=2598, cols=2598, bs=6 - total: nonzeros=441252, allocated nonzeros=441252 + rows=2604, cols=2604, bs=6 + total: nonzeros=444384, allocated nonzeros=444384 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 266 nodes, limit used is 5 + using I-node (on process 0) routines: found 272 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.258864, max 2.8475 - eigenvalues provided (min 0.0705311, max 2.58864) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.259081, max 2.8499 + eigenvalues provided (min 0.0736525, max 2.59081) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -3022,7 +3058,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3374 nodes, limit used is 5 + using I-node (on process 0) routines: found 3370 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -3031,47 +3067,47 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3374 nodes, limit used is 5 + using I-node (on process 0) routines: found 3370 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 5.440000 5.440000 -Build dofmap data | 2 0.005000 0.010000 +Build BoxMesh (tetrahedra) | 1 5.510000 5.510000 +Build dofmap data | 2 0.010000 0.020000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.000000 0.000000 -Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.090000 0.090000 -Compute graph partition (SCOTCH) | 1 5.320000 5.320000 -Compute local part of mesh dual graph (mixed) | 2 0.040000 0.080000 +Compute dof reordering map | 2 0.005000 0.010000 +Compute entities of dim = 2 | 1 0.130000 0.130000 +Compute graph partition (SCOTCH) | 1 5.340000 5.340000 +Compute local part of mesh dual graph (mixed) | 2 0.045000 0.090000 Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.000000 0.000000 -Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 +Compute non-local part of mesh dual graph | 1 0.010000 0.010000 +Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.030000 0.030000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 -GPS: create_level_structure | 4 0.003333 0.010000 +GPS: create_level_structure | 2 0.005000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.030000 0.030000 -Init PETSc | 1 0.000000 0.000000 +Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 1.050000 1.050000 +PETSc Krylov solver | 1 1.440000 1.440000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 5.320000 5.320000 +SCOTCH: call SCOTCH_dgraphPart | 1 5.340000 5.340000 SparsityPattern::finalize | 1 0.010000 0.010000 -Topology: create | 1 0.020000 0.020000 -Topology: determine shared index ownership | 1 0.000000 0.000000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 -ZZZ Assemble matrix | 1 0.230000 0.230000 -ZZZ Assemble vector | 1 0.020000 0.020000 -ZZZ Create Mesh | 1 5.440000 5.440000 -ZZZ Create RHS function | 1 0.010000 0.010000 +Topology: create | 1 0.040000 0.040000 +Topology: determine shared index ownership | 1 0.020000 0.020000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 +ZZZ Assemble matrix | 1 0.360000 0.360000 +ZZZ Assemble vector | 1 0.030000 0.030000 +ZZZ Create Mesh | 1 5.510000 5.510000 +ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.090000 0.090000 +ZZZ Create facets and facet->cell connectivity | 1 0.130000 0.130000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.010000 0.010000 ZZZ FunctionSpace | 1 0.010000 0.010000 -ZZZ Solve | 1 1.050000 1.050000 -*** Number of Krylov iterations: 20 +ZZZ Solve | 1 1.460000 1.460000 +*** Number of Krylov iterations: 18 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** @@ -3079,16 +3115,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt64z with 3 processes, by pbuilder1 on Mon Dec 30 13:23:55 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Tue Dec 31 15:30:13 2024 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total -Time (sec): 6.888e+00 1.000 6.887e+00 +Time (sec): 7.560e+00 1.000 7.560e+00 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 2.355e+08 1.097 2.240e+08 6.719e+08 -Flops/sec: 3.420e+07 1.097 3.252e+07 9.756e+07 -MPI Msg Count: 8.280e+02 1.041 8.070e+02 2.421e+03 -MPI Msg Len (bytes): 7.017e+06 1.261 7.791e+03 1.886e+07 +Flops: 2.169e+08 1.064 2.090e+08 6.270e+08 +Flops/sec: 2.869e+07 1.064 2.764e+07 8.293e+07 +MPI Msg Count: 7.810e+02 1.041 7.610e+02 2.283e+03 +MPI Msg Len (bytes): 7.125e+06 1.338 7.984e+03 1.823e+07 MPI Reductions: 9.600e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -3097,7 +3133,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 6.8871e+00 100.0% 6.7189e+08 100.0% 2.421e+03 100.0% 7.791e+03 100.0% 7.900e+01 82.3% + 0: Main Stage: 7.5600e+00 100.0% 6.2696e+08 100.0% 2.283e+03 100.0% 7.984e+03 100.0% 7.900e+01 82.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3121,81 +3157,81 @@ --- Event Stage 0: Main Stage 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1.0 9.3422e-02 3.4 0.00e+00 0.0 1.0e+02 5.6e+04 0.0e+00 1 0 4 30 0 1 0 4 30 0 0 -MatAssemblyEnd 45 1.0 8.1084e-02 1.1 7.91e+04 1.3 1.7e+02 4.9e+02 1.8e+01 1 0 7 0 19 1 0 7 0 23 3 -MatGetRowIJ 1 0.0 1.4583e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 1 1.0 6.1911e-03 1.0 0.00e+00 0.0 4.0e+00 3.9e+02 5.0e+00 0 0 0 0 5 0 0 0 0 6 0 -MatGetOrdering 1 0.0 3.0447e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 2.4258e-03 1.0 0.00e+00 0.0 1.2e+02 8.2e+02 9.0e+00 0 0 5 1 9 0 0 5 1 11 0 -MatZeroEntries 2 1.0 1.4219e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 5.0710e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatAXPY 4 1.0 1.7665e-02 1.0 1.20e+05 1.1 2.4e+01 3.9e+02 2.0e+00 0 0 1 0 2 0 0 1 0 3 20 -MatTranspose 9 1.0 1.2847e-02 1.1 0.00e+00 0.0 1.0e+02 1.8e+03 9.0e+00 0 0 4 1 9 0 0 4 1 11 0 -MatMatMultSym 6 1.0 8.3576e-02 1.1 0.00e+00 0.0 6.0e+01 1.0e+04 6.0e+00 1 0 2 3 6 1 0 2 3 8 0 -MatMatMultNum 2 1.0 2.7649e-02 1.0 7.23e+06 1.1 1.2e+01 3.2e+04 0.0e+00 0 3 0 2 0 0 3 0 2 0 735 -MatPtAPSymbolic 2 1.0 2.4051e-01 1.0 0.00e+00 0.0 6.0e+01 5.9e+04 6.0e+00 3 0 2 19 6 3 0 2 19 8 0 -MatPtAPNumeric 2 1.0 3.1760e-01 1.0 6.42e+07 1.2 2.8e+01 1.2e+05 2.0e+00 5 26 1 17 2 5 26 1 17 3 554 -MatTrnMatMultSym 1 1.0 4.6627e-02 1.0 0.00e+00 0.0 4.2e+01 2.9e+04 4.0e+00 1 0 2 6 4 1 0 2 6 5 0 -MatGetLocalMat 7 1.0 4.6414e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 6 1.0 5.1413e-03 1.1 0.00e+00 0.0 8.4e+01 4.4e+04 0.0e+00 0 0 3 20 0 0 0 3 20 0 0 -MatCreateGraph 2 1.0 4.5796e-02 1.0 1.57e+05 1.1 1.4e+02 1.5e+03 1.4e+01 1 0 6 1 15 1 0 6 1 18 10 -VecMDot 20 1.0 3.3865e-03 1.5 1.23e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1059 -VecTDot 42 1.0 5.0189e-03 1.9 8.59e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 502 -VecNorm 43 1.0 9.6496e-03 5.1 6.76e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 205 -VecScale 22 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8.9836e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 2.6610e-01 1.0 1.46e+08 1.1 1.5e+03 4.7e+03 0.0e+00 4 63 60 36 0 4 63 60 36 0 1596 -KSPGMRESOrthog 20 1.0 4.1548e-03 1.4 2.47e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1726 -PCSetUp_GAMG+ 1 1.0 7.8346e-01 1.0 8.73e+07 1.2 8.9e+02 1.2e+04 5.8e+01 11 36 37 58 60 11 36 37 58 73 308 - PCGAMGCreateG 2 1.0 4.5807e-02 1.0 1.57e+05 1.1 1.4e+02 1.5e+03 1.4e+01 1 0 6 1 15 1 0 6 1 18 10 - GAMG Coarsen 4 1.0 5.2156e-02 1.0 0.00e+00 0.0 1.9e+02 7.6e+03 1.3e+01 1 0 8 8 14 1 0 8 8 16 0 - GAMG MIS/Agg 2 1.0 4.9369e-02 1.0 0.00e+00 0.0 1.6e+02 8.2e+03 1.3e+01 1 0 7 7 14 1 0 7 7 16 0 - PCGAMGProl 2 1.0 1.8635e-02 1.0 0.00e+00 0.0 2.6e+02 3.0e+03 6.0e+00 0 0 11 4 6 0 0 11 4 8 0 - GAMG Prol-col 2 1.0 8.0478e-03 1.0 0.00e+00 0.0 2.2e+02 2.5e+03 0.0e+00 0 0 9 3 0 0 0 9 3 0 0 - GAMG Prol-lift 2 1.0 1.0083e-02 1.0 0.00e+00 0.0 3.6e+01 6.1e+03 2.0e+00 0 0 1 1 2 0 0 1 1 3 0 - PCGAMGOptProl 2 1.0 1.0115e-01 1.0 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2.2 1.24e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 660 +VecTDot 38 1.0 4.6319e-03 2.7 7.79e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 492 +VecNorm 41 1.0 1.2507e-02 2.4 6.37e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 148 +VecScale 22 1.0 1.9764e-04 1.1 1.24e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1815 +VecCopy 118 1.0 9.4887e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 134 1.0 6.1320e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 38 1.0 1.3725e-03 1.3 7.61e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1621 +VecAYPX 245 1.0 5.4226e-03 1.2 2.06e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1102 +VecAXPBYCZ 76 1.0 2.8193e-03 1.2 2.13e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2197 +VecMAXPY 22 1.0 1.9458e-03 1.1 1.46e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2178 +VecAssemblyBegin 61 1.0 3.1942e-03 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAssemblyEnd 61 1.0 2.0702e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecPointwiseMult 174 1.0 4.2933e-03 1.2 9.77e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 661 +VecScatterBegin 330 1.0 7.9323e-03 1.1 0.00e+00 0.0 1.7e+03 4.4e+03 0.0e+00 0 0 75 42 0 0 0 75 42 0 0 +VecScatterEnd 330 1.0 1.4777e-02 1.7 1.24e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2 +VecNormalize 22 1.0 5.7199e-03 5.1 3.71e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 188 +SFSetGraph 26 1.0 3.6189e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 26 1.0 2.6927e-03 1.1 0.00e+00 0.0 2.5e+02 4.8e+02 0.0e+00 0 0 11 1 0 0 0 11 1 0 0 +SFBcastBegin 9 1.0 5.3929e-04 1.5 0.00e+00 0.0 5.4e+01 1.4e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 +SFBcastEnd 9 1.0 3.1507e-04 4.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFReduceBegin 3 1.0 1.6706e-04 1.0 0.00e+00 0.0 1.5e+01 6.3e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 +SFReduceEnd 3 1.0 4.0916e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFPack 342 1.0 2.2880e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 342 1.0 5.8690e-04 1.2 1.24e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 50 +KSPSetUp 1 1.0 1.4109e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 3.5670e-01 1.0 1.31e+08 1.1 1.3e+03 4.7e+03 0.0e+00 5 61 58 34 0 5 61 58 34 0 1075 +KSPGMRESOrthog 20 1.0 7.1582e-03 1.7 2.47e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1002 +PCSetUp_GAMG+ 1 1.0 1.0859e+00 1.0 8.35e+07 1.1 8.9e+02 1.2e+04 5.8e+01 14 38 39 60 60 14 38 39 60 73 219 + PCGAMGCreateG 2 1.0 7.6045e-02 1.0 1.57e+05 1.1 1.4e+02 1.6e+03 1.4e+01 1 0 6 1 15 1 0 6 1 18 6 + GAMG Coarsen 4 1.0 7.0140e-02 1.0 0.00e+00 0.0 1.9e+02 7.8e+03 1.3e+01 1 0 8 8 14 1 0 8 8 16 0 + GAMG MIS/Agg 2 1.0 6.5741e-02 1.0 0.00e+00 0.0 1.6e+02 8.4e+03 1.3e+01 1 0 7 7 14 1 0 7 7 16 0 + PCGAMGProl 2 1.0 3.1008e-02 1.0 0.00e+00 0.0 2.6e+02 3.0e+03 6.0e+00 0 0 11 4 6 0 0 11 4 8 0 + GAMG Prol-col 2 1.0 1.2620e-02 1.0 0.00e+00 0.0 2.2e+02 2.5e+03 0.0e+00 0 0 10 3 0 0 0 10 3 0 0 + GAMG Prol-lift 2 1.0 1.7644e-02 1.0 0.00e+00 0.0 3.6e+01 6.1e+03 2.0e+00 0 0 2 1 2 0 0 2 1 3 0 + PCGAMGOptProl 2 1.0 1.5999e-01 1.0 2.28e+07 1.1 1.9e+02 8.5e+03 6.0e+00 2 10 8 9 6 2 10 8 9 8 406 + GAMG smooth 2 1.0 1.1420e-01 1.0 7.76e+06 1.1 7.2e+01 1.4e+04 6.0e+00 2 4 3 5 6 2 4 3 5 8 193 + PCGAMGCreateL 2 1.0 7.4643e-01 1.0 6.05e+07 1.1 1.1e+02 6.3e+04 1.9e+01 10 27 5 37 20 10 27 5 37 24 231 + GAMG PtAP 2 1.0 7.3732e-01 1.0 6.05e+07 1.1 8.8e+01 7.6e+04 8.0e+00 10 27 4 37 8 10 27 4 37 10 234 + GAMG Reduce 1 1.0 2.3188e-01 1.0 2.10e+07 1.5 4.7e+01 4.8e+04 1.5e+01 3 9 2 12 16 3 9 2 12 19 236 +PCGAMG Squ l00 1 1.0 6.1531e-02 1.0 0.00e+00 0.0 4.2e+01 2.9e+04 4.0e+00 1 0 2 7 4 1 0 2 7 5 0 +PCGAMG Gal l00 1 1.0 5.1453e-01 1.0 3.94e+07 1.0 6.0e+01 7.5e+04 4.0e+00 7 19 3 25 4 7 19 3 25 5 229 +PCGAMG Opt l00 1 1.0 8.2987e-02 1.0 5.14e+06 1.1 3.6e+01 2.1e+04 3.0e+00 1 2 2 4 3 1 2 2 4 4 181 +PCGAMG Gal l01 1 1.0 2.2278e-01 1.0 2.10e+07 1.5 2.8e+01 7.9e+04 4.0e+00 3 9 1 12 4 3 9 1 12 5 245 +PCGAMG Opt l01 1 1.0 1.7181e-02 1.0 2.05e+06 1.3 3.6e+01 6.6e+03 3.0e+00 0 1 2 1 3 0 1 2 1 4 310 +PCSetUp 1 1.0 1.0859e+00 1.0 8.35e+07 1.1 8.9e+02 1.2e+04 5.8e+01 14 38 39 60 60 14 38 39 60 73 219 +PCSetUpOnBlocks 19 1.0 1.5099e-02 28.9 6.03e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 399 +PCApply 19 1.0 3.1498e-01 1.0 1.14e+08 1.1 1.2e+03 4.4e+03 0.0e+00 4 53 53 29 0 4 53 53 29 0 1055 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -3218,9 +3254,9 @@ Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== -Average time to get PetscTime(): 1.12e-07 -Average time for MPI_Barrier(): 4.8238e-06 -Average time for zero size MPI_Send(): 3.44e-06 +Average time to get PetscTime(): 1.36e-07 +Average time for MPI_Barrier(): 4.7396e-06 +Average time for zero size MPI_Send(): 4.62633e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) @@ -3284,67 +3320,67 @@ Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== elasticity strong scaling (3 processes with ndofs=30000) ==== -[2024-12-30 13:23:55.359] [RANK: 0] [info] Using partitioner with 69312 cell data -[2024-12-30 13:23:55.359] [RANK: 0] [info] Compute partition of cells across ranks -[2024-12-30 13:23:55.359] [RANK: 0] [info] Building mesh dual graph -[2024-12-30 13:23:55.359] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-12-30 13:23:55.390] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-12-30 13:23:55.390] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:23:55.390] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:23:55.390] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-12-30 13:23:55.392] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) -[2024-12-30 13:23:55.392] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-12-30 13:24:00.374] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-12-30 13:24:00.377] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-12-30 13:24:00.380] [RANK: 0] [info] Extract basic topology: 68656->68656 -[2024-12-30 13:24:00.380] [RANK: 0] [info] Build local dual graph -[2024-12-30 13:24:00.380] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-12-30 13:24:00.408] [RANK: 0] [info] GPS pseudo-diameter:(118) 15915-522 -[2024-12-30 13:24:00.412] [RANK: 0] [info] Create topology (single cell type) -[2024-12-30 13:24:00.412] [RANK: 0] [info] Create topology (generalised) -[2024-12-30 13:24:00.418] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-12-30 13:24:00.418] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-12-30 13:24:00.424] [RANK: 0] [info] Compute ghost indices -[2024-12-30 13:24:00.425] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-12-30 13:24:00.425] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:00.427] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-12-30 13:24:00.427] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:00.435] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:00.436] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:00.436] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:00.436] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:00.440] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-12-30 13:24:00.440] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:00.440] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-12-30 13:24:00.440] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:00.440] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:00.440] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-12-30 13:24:00.441] [RANK: 0] [info] Checking required entities per dimension -[2024-12-30 13:24:00.441] [RANK: 0] [info] Cell type: 0 dofmap: 17164x4 -[2024-12-30 13:24:00.446] [RANK: 0] [info] Global index computation -[2024-12-30 13:24:00.446] [RANK: 0] [info] Got 1 index_maps -[2024-12-30 13:24:00.446] [RANK: 0] [info] Get global indices -[2024-12-30 13:24:00.446] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:00.446] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:13.283] [RANK: 0] [info] Using partitioner with 69312 cell data +[2024-12-31 15:30:13.284] [RANK: 0] [info] Compute partition of cells across ranks +[2024-12-31 15:30:13.284] [RANK: 0] [info] Building mesh dual graph +[2024-12-31 15:30:13.284] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-12-31 15:30:13.327] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2024-12-31 15:30:13.329] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:13.329] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:13.329] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2024-12-31 15:30:13.332] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) +[2024-12-31 15:30:13.332] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2024-12-31 15:30:18.588] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-12-31 15:30:18.602] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-12-31 15:30:18.652] [RANK: 0] [info] Extract basic topology: 69308->69308 +[2024-12-31 15:30:18.652] [RANK: 0] [info] Build local dual graph +[2024-12-31 15:30:18.652] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-12-31 15:30:18.721] [RANK: 0] [info] GPS pseudo-diameter:(120) 1230-16753 +[2024-12-31 15:30:18.732] [RANK: 0] [info] Create topology (single cell type) +[2024-12-31 15:30:18.732] [RANK: 0] [info] Create topology (generalised) +[2024-12-31 15:30:18.742] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-12-31 15:30:18.742] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-12-31 15:30:18.749] [RANK: 0] [info] Compute ghost indices +[2024-12-31 15:30:18.750] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2024-12-31 15:30:18.750] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:18.752] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-12-31 15:30:18.753] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:18.760] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:18.760] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:18.760] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:18.761] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:18.765] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-12-31 15:30:18.765] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:18.765] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2024-12-31 15:30:18.766] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:18.766] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:18.766] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2024-12-31 15:30:18.767] [RANK: 0] [info] Checking required entities per dimension +[2024-12-31 15:30:18.767] [RANK: 0] [info] Cell type: 0 dofmap: 17327x4 +[2024-12-31 15:30:18.774] [RANK: 0] [info] Global index computation +[2024-12-31 15:30:18.774] [RANK: 0] [info] Got 1 index_maps +[2024-12-31 15:30:18.774] [RANK: 0] [info] Get global indices +[2024-12-31 15:30:18.776] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:18.776] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times -[2024-12-30 13:24:00.448] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-12-30 13:24:00.482] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:00.484] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:00.552] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:00.552] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:00.554] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-12-30 13:24:00.554] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-12-30 13:24:00.556] [RANK: 0] [info] Checking required entities per dimension -[2024-12-30 13:24:00.556] [RANK: 0] [info] Cell type: 0 dofmap: 17164x4 -[2024-12-30 13:24:00.560] [RANK: 0] [info] Global index computation -[2024-12-30 13:24:00.560] [RANK: 0] [info] Got 1 index_maps -[2024-12-30 13:24:00.560] [RANK: 0] [info] Get global indices -[2024-12-30 13:24:00.561] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:00.561] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:00.562] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-12-30 13:24:00.562] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-12-30 13:24:00.562] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-12-30 13:24:00.591] [RANK: 0] [info] Column ghost size increased from 225 to 542 +[2024-12-31 15:30:18.779] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2024-12-31 15:30:18.825] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:18.825] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:18.901] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:18.901] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:18.903] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-12-31 15:30:18.904] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2024-12-31 15:30:18.906] [RANK: 0] [info] Checking required entities per dimension +[2024-12-31 15:30:18.906] [RANK: 0] [info] Cell type: 0 dofmap: 17327x4 +[2024-12-31 15:30:18.912] [RANK: 0] [info] Global index computation +[2024-12-31 15:30:18.912] [RANK: 0] [info] Got 1 index_maps +[2024-12-31 15:30:18.913] [RANK: 0] [info] Get global indices +[2024-12-31 15:30:18.914] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:18.914] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:18.915] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-12-31 15:30:18.916] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-12-31 15:30:18.916] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2024-12-31 15:30:18.959] [RANK: 0] [info] Column ghost size increased from 222 to 553 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -3358,7 +3394,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -[2024-12-30 13:24:00.860] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2024-12-31 15:30:19.348] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -3379,11 +3415,11 @@ MatCoarsen Object: 3 MPI processes type: misk Number smoothing steps to construct prolongation 1 - Complexity: grid = 1.0954 operator = 1.39048 + Complexity: grid = 1.0944 operator = 1.39287 Per-level complexity: op = operator, int = interpolation #equations | #active PEs | avg nnz/row op | avg nnz/row int - 228 1 187 0 - 2634 3 170 39 + 234 1 189 0 + 2598 3 173 37 30000 3 42 22 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes @@ -3409,35 +3445,35 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.08799 + factor fill ratio given 5., needed 1.15863 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=228, cols=228, bs=6 + rows=234, cols=234, bs=6 package used to perform factorization: petsc - total: nonzeros=46296, allocated nonzeros=46296 - using I-node routines: found 65 nodes, limit used is 5 + total: nonzeros=51012, allocated nonzeros=51012 + using I-node routines: found 59 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=228, cols=228, bs=6 - total: nonzeros=42552, allocated nonzeros=42552 + rows=234, cols=234, bs=6 + total: nonzeros=44028, allocated nonzeros=44028 total number of mallocs used during MatSetValues calls=0 - using I-node routines: found 74 nodes, limit used is 5 + using I-node routines: found 76 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=228, cols=228, bs=6 - total: nonzeros=42552, allocated nonzeros=42552 + rows=234, cols=234, bs=6 + total: nonzeros=44028, allocated nonzeros=44028 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 74 nodes, limit used is 5 + using I-node (on process 0) routines: found 76 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.287639, max 3.16402 - eigenvalues provided (min 0.0353673, max 2.87639) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.332312, max 3.65543 + eigenvalues provided (min 0.00991105, max 3.32312) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -3448,18 +3484,18 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=2634, cols=2634, bs=6 - total: nonzeros=446148, allocated nonzeros=446148 + rows=2598, cols=2598, bs=6 + total: nonzeros=447660, allocated nonzeros=447660 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 278 nodes, limit used is 5 + using I-node (on process 0) routines: found 274 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.257652, max 2.83418 - eigenvalues provided (min 0.0765762, max 2.57652) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.257729, max 2.83502 + eigenvalues provided (min 0.0741513, max 2.57729) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -3474,7 +3510,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3345 nodes, limit used is 5 + using I-node (on process 0) routines: found 3390 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -3483,47 +3519,47 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3345 nodes, limit used is 5 + using I-node (on process 0) routines: found 3390 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 5.090000 5.090000 -Build dofmap data | 2 0.005000 0.010000 +Build BoxMesh (tetrahedra) | 1 5.500000 5.500000 +Build dofmap data | 2 0.010000 0.020000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.110000 0.110000 -Compute graph partition (SCOTCH) | 1 4.990000 4.990000 -Compute local part of mesh dual graph (mixed) | 2 0.030000 0.060000 +Compute entities of dim = 2 | 1 0.130000 0.130000 +Compute graph partition (SCOTCH) | 1 5.260000 5.260000 +Compute local part of mesh dual graph (mixed) | 2 0.055000 0.110000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.000000 0.000000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.030000 0.030000 -Distribute row-wise data (scalable) | 1 0.010000 0.010000 -GPS: create_level_structure | 2 0.000000 0.000000 -Gibbs-Poole-Stockmeyer ordering | 1 0.000000 0.000000 -Init MPI | 1 0.030000 0.030000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.070000 0.070000 +Distribute row-wise data (scalable) | 1 0.000000 0.000000 +GPS: create_level_structure | 2 0.002000 0.010000 +Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 +Init MPI | 1 0.020000 0.020000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.005000 0.010000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 1.020000 1.020000 +PETSc Krylov solver | 1 1.460000 1.460000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 4.980000 4.980000 +SCOTCH: call SCOTCH_dgraphPart | 1 5.260000 5.260000 SparsityPattern::finalize | 1 0.010000 0.010000 -Topology: create | 1 0.030000 0.030000 -Topology: determine shared index ownership | 1 0.000000 0.000000 +Topology: create | 1 0.080000 0.080000 +Topology: determine shared index ownership | 1 0.060000 0.060000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble matrix | 1 0.230000 0.230000 +ZZZ Assemble matrix | 1 0.350000 0.350000 ZZZ Assemble vector | 1 0.020000 0.020000 -ZZZ Create Mesh | 1 5.090000 5.090000 -ZZZ Create RHS function | 1 0.010000 0.010000 +ZZZ Create Mesh | 1 5.500000 5.500000 +ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.110000 0.110000 +ZZZ Create facets and facet->cell connectivity | 1 0.130000 0.130000 ZZZ Create forms | 1 0.000000 0.000000 -ZZZ Create near-nullspace | 1 0.010000 0.010000 +ZZZ Create near-nullspace | 1 0.020000 0.020000 ZZZ FunctionSpace | 1 0.010000 0.010000 -ZZZ Solve | 1 1.020000 1.020000 -*** Number of Krylov iterations: 18 +ZZZ Solve | 1 1.460000 1.460000 +*** Number of Krylov iterations: 20 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** @@ -3531,16 +3567,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt64z with 3 processes, by pbuilder1 on Mon Dec 30 13:24:01 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Tue Dec 31 15:30:20 2024 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total -Time (sec): 6.524e+00 1.000 6.524e+00 +Time (sec): 7.537e+00 1.000 7.537e+00 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 2.144e+08 1.031 2.110e+08 6.331e+08 -Flops/sec: 3.286e+07 1.031 3.235e+07 9.704e+07 -MPI Msg Count: 7.800e+02 1.043 7.590e+02 2.277e+03 -MPI Msg Len (bytes): 7.361e+06 1.381 8.409e+03 1.915e+07 +Flops: 2.280e+08 1.042 2.235e+08 6.705e+08 +Flops/sec: 3.025e+07 1.042 2.966e+07 8.897e+07 +MPI Msg Count: 8.300e+02 1.043 8.077e+02 2.423e+03 +MPI Msg Len (bytes): 8.066e+06 1.399 8.315e+03 2.015e+07 MPI Reductions: 9.600e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -3549,7 +3585,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 6.5244e+00 100.0% 6.3313e+08 100.0% 2.277e+03 100.0% 8.409e+03 100.0% 7.900e+01 82.3% + 0: Main Stage: 7.5368e+00 100.0% 6.7051e+08 100.0% 2.423e+03 100.0% 8.315e+03 100.0% 7.900e+01 82.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3573,81 +3609,81 @@ --- Event Stage 0: Main Stage -BuildTwoSided 109 1.0 7.8917e-02 4.5 0.00e+00 0.0 1.8e+02 4.0e+00 0.0e+00 1 0 8 0 0 1 0 8 0 0 0 -BuildTwoSidedF 83 1.0 7.9000e-02 4.6 0.00e+00 0.0 9.8e+01 6.1e+04 0.0e+00 1 0 4 31 0 1 0 4 31 0 0 -MatMult 190 1.0 1.7386e-01 1.1 1.15e+08 1.1 1.1e+03 5.8e+03 0.0e+00 3 53 50 35 0 3 53 50 35 0 1919 -MatMultAdd 38 1.0 1.3675e-02 1.0 9.44e+06 1.0 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 2044 -MatMultTranspose 38 1.0 3.0003e-02 1.3 9.45e+06 1.0 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 933 -MatSolve 19 0.0 2.4113e-03 0.0 1.75e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 728 -MatLUFactorSym 1 1.0 3.3489e-03 126.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 8.8234e-03 3063.7 6.01e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 682 -MatScale 6 1.0 1.0740e-03 1.0 5.99e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 1652 -MatResidual 38 1.0 3.2905e-02 1.1 2.24e+07 1.1 2.3e+02 5.6e+03 0.0e+00 0 10 10 7 0 0 10 10 7 0 1961 -MatAssemblyBegin 45 1.0 9.7511e-02 2.0 0.00e+00 0.0 9.8e+01 6.1e+04 0.0e+00 1 0 4 31 0 1 0 4 31 0 0 -MatAssemblyEnd 45 1.0 8.5415e-02 1.1 8.18e+04 1.3 1.7e+02 5.2e+02 1.8e+01 1 0 8 0 19 1 0 8 0 23 3 -MatGetRowIJ 1 0.0 1.0448e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 1 1.0 6.0167e-03 1.0 0.00e+00 0.0 4.0e+00 3.6e+02 5.0e+00 0 0 0 0 5 0 0 0 0 6 0 -MatGetOrdering 1 0.0 2.6447e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 2.1485e-03 1.0 0.00e+00 0.0 1.2e+02 8.6e+02 9.0e+00 0 0 5 1 9 0 0 5 1 11 0 -MatZeroEntries 2 1.0 1.4027e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 4.9290e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatAXPY 4 1.0 1.7032e-02 1.0 1.17e+05 1.0 2.4e+01 4.1e+02 2.0e+00 0 0 1 0 2 0 0 1 0 3 20 -MatTranspose 9 1.0 1.3293e-02 1.1 0.00e+00 0.0 1.0e+02 1.9e+03 9.0e+00 0 0 5 1 9 0 0 5 1 11 0 -MatMatMultSym 6 1.0 8.4483e-02 1.1 0.00e+00 0.0 6.0e+01 1.1e+04 6.0e+00 1 0 3 3 6 1 0 3 3 8 0 -MatMatMultNum 2 1.0 2.8337e-02 1.0 7.07e+06 1.1 1.2e+01 3.3e+04 0.0e+00 0 3 1 2 0 0 3 1 2 0 719 -MatPtAPSymbolic 2 1.0 2.4255e-01 1.0 0.00e+00 0.0 6.0e+01 6.2e+04 6.0e+00 4 0 3 20 6 4 0 3 20 8 0 -MatPtAPNumeric 2 1.0 3.2081e-01 1.0 6.14e+07 1.1 2.8e+01 1.2e+05 2.0e+00 5 28 1 18 2 5 28 1 18 3 554 -MatTrnMatMultSym 1 1.0 4.8213e-02 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 4.0e+00 1 0 2 7 4 1 0 2 7 5 0 -MatGetLocalMat 7 1.0 4.5387e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 6 1.0 5.4793e-03 1.2 0.00e+00 0.0 8.4e+01 4.7e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 -MatCreateGraph 2 1.0 4.5086e-02 1.0 1.53e+05 1.0 1.4e+02 1.6e+03 1.4e+01 1 0 6 1 15 1 0 6 1 18 10 -VecMDot 20 1.0 3.3095e-03 1.7 1.21e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1085 -VecTDot 38 1.0 1.7571e-03 1.5 7.63e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1298 -VecNorm 41 1.0 7.4141e-03 6.2 6.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 251 -VecScale 22 1.0 1.2252e-04 1.0 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2930 -VecCopy 118 1.0 8.0621e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 134 1.0 4.0875e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 38 1.0 8.3497e-04 1.0 7.44e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2665 -VecAYPX 245 1.0 3.3059e-03 1.1 2.00e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1809 -VecAXPBYCZ 76 1.0 1.5519e-03 1.2 2.08e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3995 -VecMAXPY 22 1.0 7.3513e-04 1.0 1.42e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5771 -VecAssemblyBegin 61 1.0 1.2636e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAssemblyEnd 61 1.0 1.0080e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 174 1.0 2.6623e-03 1.1 9.53e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1066 -VecScatterBegin 330 1.0 6.4654e-03 1.1 0.00e+00 0.0 1.7e+03 4.6e+03 0.0e+00 0 0 75 41 0 0 0 75 41 0 0 -VecScatterEnd 330 1.0 1.2954e-02 2.2 1.21e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2 -VecNormalize 22 1.0 7.7801e-04 1.1 3.62e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1384 -SFSetGraph 26 1.0 2.6795e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 26 1.0 1.7809e-03 1.0 0.00e+00 0.0 2.5e+02 5.0e+02 0.0e+00 0 0 11 1 0 0 0 11 1 0 0 -SFBcastBegin 9 1.0 1.6475e-04 1.0 0.00e+00 0.0 5.4e+01 1.5e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 -SFBcastEnd 9 1.0 6.5198e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFReduceBegin 3 1.0 9.4596e-05 1.1 0.00e+00 0.0 1.5e+01 6.6e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 -SFReduceEnd 3 1.0 2.0760e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFPack 342 1.0 1.6612e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 342 1.0 5.0718e-04 1.4 1.21e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 60 -KSPSetUp 1 1.0 7.7357e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 2.2690e-01 1.0 1.29e+08 1.0 1.3e+03 4.9e+03 0.0e+00 3 61 58 34 0 3 61 58 34 0 1692 -KSPGMRESOrthog 20 1.0 4.0507e-03 1.5 2.41e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1772 -PCSetUp_GAMG+ 1 1.0 7.8853e-01 1.0 8.35e+07 1.1 8.9e+02 1.3e+04 5.8e+01 12 38 39 60 60 12 38 39 60 73 308 - PCGAMGCreateG 2 1.0 4.5096e-02 1.0 1.53e+05 1.0 1.4e+02 1.6e+03 1.4e+01 1 0 6 1 15 1 0 6 1 18 10 - GAMG Coarsen 4 1.0 5.3534e-02 1.0 0.00e+00 0.0 1.9e+02 8.1e+03 1.3e+01 1 0 8 8 14 1 0 8 8 16 0 - GAMG MIS/Agg 2 1.0 5.0593e-02 1.0 0.00e+00 0.0 1.6e+02 8.8e+03 1.3e+01 1 0 7 7 14 1 0 7 7 16 0 - PCGAMGProl 2 1.0 1.8834e-02 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 6.0e+00 0 0 11 4 6 0 0 11 4 8 0 - GAMG Prol-col 2 1.0 7.7316e-03 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 0.0e+00 0 0 10 3 0 0 0 10 3 0 0 - GAMG Prol-lift 2 1.0 1.0533e-02 1.0 0.00e+00 0.0 3.6e+01 6.8e+03 2.0e+00 0 0 2 1 2 0 0 2 1 3 0 - PCGAMGOptProl 2 1.0 1.0005e-01 1.0 2.24e+07 1.1 1.9e+02 8.9e+03 6.0e+00 2 10 8 9 6 2 10 8 9 8 650 - GAMG smooth 2 1.0 7.3841e-02 1.0 7.63e+06 1.1 7.2e+01 1.4e+04 6.0e+00 1 3 3 5 6 1 3 3 5 8 298 - PCGAMGCreateL 2 1.0 5.6969e-01 1.0 6.14e+07 1.1 1.1e+02 6.7e+04 1.9e+01 9 28 5 37 20 9 28 5 37 24 312 - GAMG PtAP 2 1.0 5.6296e-01 1.0 6.14e+07 1.1 8.8e+01 8.1e+04 8.0e+00 9 28 4 37 8 9 28 4 37 10 316 - GAMG Reduce 1 1.0 1.8690e-01 1.0 2.24e+07 1.3 4.7e+01 5.1e+04 1.5e+01 3 10 2 13 16 3 10 2 13 19 322 -PCGAMG Squ l00 1 1.0 4.8219e-02 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 4.0e+00 1 0 2 7 4 1 0 2 7 5 0 -PCGAMG Gal l00 1 1.0 3.8283e-01 1.0 4.04e+07 1.1 6.0e+01 8.0e+04 4.0e+00 6 19 3 25 4 6 19 3 25 5 307 -PCGAMG Opt l00 1 1.0 4.8865e-02 1.0 5.07e+06 1.0 3.6e+01 2.2e+04 3.0e+00 1 2 2 4 3 1 2 2 4 4 307 -PCGAMG Gal l01 1 1.0 1.8017e-01 1.0 2.24e+07 1.3 2.8e+01 8.5e+04 4.0e+00 3 10 1 12 4 3 10 1 12 5 334 -PCGAMG Opt l01 1 1.0 1.5880e-02 1.0 2.09e+06 1.4 3.6e+01 7.0e+03 3.0e+00 0 1 2 1 3 0 1 2 1 4 337 -PCSetUp 1 1.0 7.8854e-01 1.0 8.35e+07 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0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFPack 369 1.0 2.2350e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 369 1.0 6.1112e-04 1.4 1.46e+04 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 57 +KSPSetUp 1 1.0 1.4593e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 3.8654e-01 1.0 1.45e+08 1.1 1.5e+03 4.9e+03 0.0e+00 5 63 60 36 0 5 63 60 36 0 1100 +KSPGMRESOrthog 20 1.0 5.7896e-03 1.1 2.42e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1239 +PCSetUp_GAMG+ 1 1.0 1.0725e+00 1.0 8.40e+07 1.1 9.0e+02 1.3e+04 5.8e+01 14 36 37 58 60 14 36 37 58 73 223 + PCGAMGCreateG 2 1.0 7.3074e-02 1.0 1.52e+05 1.0 1.4e+02 1.7e+03 1.4e+01 1 0 6 1 15 1 0 6 1 18 6 + GAMG Coarsen 4 1.0 7.3300e-02 1.0 0.00e+00 0.0 2.0e+02 7.9e+03 1.3e+01 1 0 8 8 14 1 0 8 8 16 0 + GAMG MIS/Agg 2 1.0 6.9079e-02 1.0 0.00e+00 0.0 1.6e+02 8.5e+03 1.3e+01 1 0 7 7 14 1 0 7 7 16 0 + PCGAMGProl 2 1.0 2.8683e-02 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 6.0e+00 0 0 11 4 6 0 0 11 4 8 0 + GAMG Prol-col 2 1.0 1.2265e-02 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 0.0e+00 0 0 9 3 0 0 0 9 3 0 0 + GAMG Prol-lift 2 1.0 1.5544e-02 1.0 0.00e+00 0.0 3.6e+01 6.5e+03 2.0e+00 0 0 1 1 2 0 0 1 1 3 0 + PCGAMGOptProl 2 1.0 1.3257e-01 1.0 2.23e+07 1.1 1.9e+02 9.0e+03 6.0e+00 2 10 8 9 6 2 10 8 9 8 490 + GAMG smooth 2 1.0 9.1265e-02 1.0 7.61e+06 1.1 7.2e+01 1.5e+04 6.0e+00 1 3 3 5 6 1 3 3 5 8 242 + PCGAMGCreateL 2 1.0 7.6258e-01 1.0 6.16e+07 1.1 1.1e+02 6.9e+04 1.9e+01 10 26 4 37 20 10 26 4 37 24 228 + GAMG PtAP 2 1.0 7.5239e-01 1.0 6.16e+07 1.1 8.8e+01 8.3e+04 8.0e+00 10 26 4 36 8 10 26 4 36 10 231 + GAMG Reduce 1 1.0 2.4329e-01 1.0 2.22e+07 1.4 4.7e+01 5.2e+04 1.5e+01 3 8 2 12 16 3 8 2 12 19 230 +PCGAMG Squ l00 1 1.0 6.5224e-02 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 4.0e+00 1 0 2 6 4 1 0 2 6 5 0 +PCGAMG Gal l00 1 1.0 5.1956e-01 1.0 3.95e+07 1.0 6.0e+01 8.2e+04 4.0e+00 7 18 2 24 4 7 18 2 24 5 227 +PCGAMG Opt l00 1 1.0 6.0544e-02 1.0 5.03e+06 1.0 3.6e+01 2.2e+04 3.0e+00 1 2 1 4 3 1 2 1 4 4 248 +PCGAMG Gal l01 1 1.0 2.3312e-01 1.0 2.22e+07 1.4 2.8e+01 8.7e+04 4.0e+00 3 8 1 12 4 3 8 1 12 5 240 +PCGAMG Opt l01 1 1.0 1.6670e-02 1.0 2.09e+06 1.3 3.6e+01 7.0e+03 3.0e+00 0 1 1 1 3 0 1 1 1 4 322 +PCSetUp 1 1.0 1.0725e+00 1.0 8.40e+07 1.1 9.0e+02 1.3e+04 5.8e+01 14 36 37 58 60 14 36 37 58 73 223 +PCSetUpOnBlocks 21 1.0 1.9196e-02 37.7 7.10e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 370 +PCApply 21 1.0 3.4422e-01 1.0 1.26e+08 1.1 1.3e+03 4.6e+03 0.0e+00 5 55 55 31 0 5 55 55 31 0 1070 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -3670,9 +3706,9 @@ Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== -Average time to get PetscTime(): 1.12e-07 -Average time for MPI_Barrier(): 4.2718e-06 -Average time for zero size MPI_Send(): 2.99967e-06 +Average time to get PetscTime(): 1.46e-07 +Average time for MPI_Barrier(): 4.6796e-06 +Average time for zero size MPI_Send(): 3.973e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) @@ -3736,69 +3772,69 @@ Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== poisson weak scaling (3 processes with ndofs=10000) ==== -[2024-12-30 13:24:02.007] [RANK: 0] [info] Using partitioner with 216000 cell data -[2024-12-30 13:24:02.009] [RANK: 0] [info] Compute partition of cells across ranks -[2024-12-30 13:24:02.009] [RANK: 0] [info] Building mesh dual graph -[2024-12-30 13:24:02.009] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-12-30 13:24:02.107] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-12-30 13:24:02.109] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:02.109] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:02.109] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-12-30 13:24:02.114] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) -[2024-12-30 13:24:02.114] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-12-30 13:24:10.542] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-12-30 13:24:10.556] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-12-30 13:24:10.577] [RANK: 0] [info] Extract basic topology: 213016->213016 -[2024-12-30 13:24:10.578] [RANK: 0] [info] Build local dual graph -[2024-12-30 13:24:10.578] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-12-30 13:24:10.672] [RANK: 0] [info] GPS pseudo-diameter:(169) 51539-1854 -[2024-12-30 13:24:10.686] [RANK: 0] [info] Create topology (single cell type) -[2024-12-30 13:24:10.686] [RANK: 0] [info] Create topology (generalised) -[2024-12-30 13:24:10.740] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-12-30 13:24:10.740] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-12-30 13:24:10.764] [RANK: 0] [info] Compute ghost indices -[2024-12-30 13:24:10.764] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-12-30 13:24:10.764] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:10.771] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-12-30 13:24:10.771] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:10.801] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:10.802] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:10.802] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:10.802] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:10.814] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-12-30 13:24:10.814] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:10.814] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-12-30 13:24:10.815] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:10.815] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:10.815] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-12-30 13:24:10.816] [RANK: 0] [info] Checking required entities per dimension -[2024-12-30 13:24:10.816] [RANK: 0] [info] Cell type: 0 dofmap: 53254x4 -[2024-12-30 13:24:10.829] [RANK: 0] [info] Global index computation -[2024-12-30 13:24:10.829] [RANK: 0] [info] Got 1 index_maps -[2024-12-30 13:24:10.830] [RANK: 0] [info] Get global indices -[2024-12-30 13:24:10.831] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:10.831] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:20.966] [RANK: 0] [info] Using partitioner with 216000 cell data +[2024-12-31 15:30:20.971] [RANK: 0] [info] Compute partition of cells across ranks +[2024-12-31 15:30:20.971] [RANK: 0] [info] Building mesh dual graph +[2024-12-31 15:30:20.971] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-12-31 15:30:21.110] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2024-12-31 15:30:21.115] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:21.116] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:21.116] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2024-12-31 15:30:21.122] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) +[2024-12-31 15:30:21.122] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2024-12-31 15:30:30.347] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-12-31 15:30:30.347] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-12-31 15:30:30.357] [RANK: 0] [info] Extract basic topology: 212788->212788 +[2024-12-31 15:30:30.357] [RANK: 0] [info] Build local dual graph +[2024-12-31 15:30:30.357] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-12-31 15:30:30.504] [RANK: 0] [info] GPS pseudo-diameter:(162) 49459-3035 +[2024-12-31 15:30:30.523] [RANK: 0] [info] Create topology (single cell type) +[2024-12-31 15:30:30.523] [RANK: 0] [info] Create topology (generalised) +[2024-12-31 15:30:30.542] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-12-31 15:30:30.542] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-12-31 15:30:30.570] [RANK: 0] [info] Compute ghost indices +[2024-12-31 15:30:30.570] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2024-12-31 15:30:30.570] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:30.577] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-12-31 15:30:30.578] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:30.604] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:30.608] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:30.608] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:30.608] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:30.620] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-12-31 15:30:30.621] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:30.621] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2024-12-31 15:30:30.622] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:30.622] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:30.622] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2024-12-31 15:30:30.624] [RANK: 0] [info] Checking required entities per dimension +[2024-12-31 15:30:30.624] [RANK: 0] [info] Cell type: 0 dofmap: 53197x4 +[2024-12-31 15:30:30.645] [RANK: 0] [info] Global index computation +[2024-12-31 15:30:30.646] [RANK: 0] [info] Got 1 index_maps +[2024-12-31 15:30:30.647] [RANK: 0] [info] Get global indices +[2024-12-31 15:30:30.649] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:30.649] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times -[2024-12-30 13:24:10.837] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-12-30 13:24:10.949] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:10.961] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:11.095] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:11.095] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:11.100] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-12-30 13:24:11.100] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-12-30 13:24:11.105] [RANK: 0] [info] Checking required entities per dimension -[2024-12-30 13:24:11.105] [RANK: 0] [info] Cell type: 0 dofmap: 53254x4 -[2024-12-30 13:24:11.120] [RANK: 0] [info] Global index computation -[2024-12-30 13:24:11.120] [RANK: 0] [info] Got 1 index_maps -[2024-12-30 13:24:11.121] [RANK: 0] [info] Get global indices -[2024-12-30 13:24:11.122] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:11.122] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:11.122] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-12-30 13:24:11.124] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-12-30 13:24:11.124] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-12-30 13:24:11.175] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-12-30 13:24:11.175] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) -[2024-12-30 13:24:11.217] [RANK: 0] [info] Column ghost size increased from 462 to 1261 +[2024-12-31 15:30:30.657] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2024-12-31 15:30:30.813] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:30.824] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:30.961] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:30.961] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:30.970] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-12-31 15:30:30.970] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2024-12-31 15:30:30.976] [RANK: 0] [info] Checking required entities per dimension +[2024-12-31 15:30:30.976] [RANK: 0] [info] Cell type: 0 dofmap: 53197x4 +[2024-12-31 15:30:30.998] [RANK: 0] [info] Global index computation +[2024-12-31 15:30:30.998] [RANK: 0] [info] Got 1 index_maps +[2024-12-31 15:30:30.999] [RANK: 0] [info] Get global indices +[2024-12-31 15:30:31.001] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:31.001] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:31.002] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-12-31 15:30:31.004] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-12-31 15:30:31.004] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2024-12-31 15:30:31.082] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-12-31 15:30:31.082] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) +[2024-12-31 15:30:31.146] [RANK: 0] [info] Column ghost size increased from 472 to 1249 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -3812,7 +3848,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -[2024-12-30 13:24:11.368] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2024-12-31 15:30:31.360] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -3858,41 +3894,41 @@ [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 8.830000 8.830000 -Build dofmap data | 2 0.015000 0.030000 -Build sparsity | 1 0.010000 0.010000 +Build BoxMesh (tetrahedra) | 1 9.700000 9.700000 +Build dofmap data | 2 0.020000 0.040000 +Build sparsity | 1 0.020000 0.020000 Compute connectivity 2-0 | 1 0.010000 0.010000 -Compute dof reordering map | 2 0.005000 0.010000 -Compute entities of dim = 2 | 1 0.270000 0.270000 -Compute graph partition (SCOTCH) | 1 8.410000 8.410000 -Compute local part of mesh dual graph (mixed) | 2 0.100000 0.200000 -Compute local-to-local map | 1 0.000000 0.000000 +Compute dof reordering map | 2 0.000000 0.000000 +Compute entities of dim = 2 | 1 0.310000 0.310000 +Compute graph partition (SCOTCH) | 1 9.220000 9.220000 +Compute local part of mesh dual graph (mixed) | 2 0.145000 0.290000 +Compute local-to-local map | 1 0.010000 0.010000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 -Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.100000 0.100000 -Distribute row-wise data (scalable) | 1 0.000000 0.000000 -GPS: create_level_structure | 2 0.005000 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 -Init MPI | 1 0.020000 0.020000 -Init PETSc | 1 0.010000 0.010000 -Init dofmap from element dofmap | 2 0.010000 0.020000 +Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.050000 0.050000 +Distribute row-wise data (scalable) | 1 0.010000 0.010000 +GPS: create_level_structure | 5 0.005000 0.020000 +Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 +Init MPI | 1 0.030000 0.030000 +Init PETSc | 1 0.000000 0.000000 +Init dofmap from element dofmap | 2 0.020000 0.040000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 0.420000 0.420000 +PETSc Krylov solver | 1 0.800000 0.800000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 8.410000 8.410000 +SCOTCH: call SCOTCH_dgraphPart | 1 9.210000 9.210000 SparsityPattern::finalize | 1 0.040000 0.040000 -Topology: create | 1 0.120000 0.120000 -Topology: determine shared index ownership | 1 0.050000 0.050000 +Topology: create | 1 0.090000 0.090000 +Topology: determine shared index ownership | 1 0.020000 0.020000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble | 1 0.240000 0.240000 -ZZZ Assemble matrix | 1 0.120000 0.120000 -ZZZ Assemble vector | 1 0.020000 0.020000 -ZZZ Create Mesh | 1 8.830000 8.830000 -ZZZ Create RHS function | 1 0.050000 0.050000 -ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.270000 0.270000 +ZZZ Assemble | 1 0.360000 0.360000 +ZZZ Assemble matrix | 1 0.180000 0.180000 +ZZZ Assemble vector | 1 0.030000 0.030000 +ZZZ Create Mesh | 1 9.700000 9.700000 +ZZZ Create RHS function | 1 0.080000 0.080000 +ZZZ Create boundary conditions | 1 0.010000 0.010000 +ZZZ Create facets and facet->cell connectivity | 1 0.320000 0.320000 ZZZ FunctionSpace | 1 0.020000 0.020000 -ZZZ Solve | 1 0.420000 0.420000 +ZZZ Solve | 1 0.800000 0.800000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -3901,16 +3937,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt64z with 3 processes, by pbuilder1 on Mon Dec 30 13:24:11 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Tue Dec 31 15:30:32 2024 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total -Time (sec): 9.782e+00 1.000 9.782e+00 +Time (sec): 1.120e+01 1.000 1.120e+01 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 3.511e+06 1.017 3.488e+06 1.046e+07 -Flops/sec: 3.590e+05 1.017 3.566e+05 1.070e+06 +Flops: 3.549e+06 1.031 3.489e+06 1.047e+07 +Flops/sec: 3.169e+05 1.031 3.115e+05 9.344e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 -MPI Msg Len (bytes): 1.936e+05 1.224 6.042e+03 5.438e+05 +MPI Msg Len (bytes): 1.870e+05 1.202 5.858e+03 5.272e+05 MPI Reductions: 3.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -3919,7 +3955,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 9.7818e+00 100.0% 1.0465e+07 100.0% 9.000e+01 100.0% 6.042e+03 100.0% 1.500e+01 46.9% + 0: Main Stage: 1.1201e+01 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.858e+03 100.0% 1.500e+01 46.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3943,32 +3979,32 @@ --- Event Stage 0: Main Stage -BuildTwoSided 5 1.0 7.8838e-03 24.3 0.00e+00 0.0 2.4e+01 4.0e+00 0.0e+00 0 0 27 0 0 0 0 27 0 0 0 -BuildTwoSidedF 2 1.0 7.8852e-03 21.5 0.00e+00 0.0 1.2e+01 2.3e+04 0.0e+00 0 0 13 50 0 0 0 13 50 0 0 -MatMult 7 1.0 4.5412e-03 1.4 1.92e+06 1.0 4.2e+01 5.8e+03 0.0e+00 0 55 47 44 0 0 55 47 44 0 1262 -MatConvert 1 1.0 7.5153e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 6 0 0 0 0 13 0 -MatAssemblyBegin 5 1.0 1.0529e-02 2.9 0.00e+00 0.0 1.2e+01 2.3e+04 0.0e+00 0 0 13 50 0 0 0 13 50 0 0 -MatAssemblyEnd 5 1.0 6.7046e-03 1.1 3.88e+03 1.2 1.2e+01 1.4e+03 1.0e+00 0 0 13 3 3 0 0 13 3 7 2 -MatGetRowIJ 4 1.0 4.8400e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 2.9483e-04 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetPreallCOO 2 1.0 2.2627e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetValuesCOO 2 1.0 1.3932e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecTDot 16 1.0 1.7329e-03 3.4 3.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 9 0 0 0 0 9 0 0 0 550 -VecNorm 8 1.0 5.8626e-04 1.9 1.60e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 0 5 0 0 0 813 -VecCopy 2 1.0 4.2998e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 7.8397e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 2.7919e-04 1.1 2.80e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2988 -VecAYPX 6 1.0 1.4239e-04 1.1 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 2511 -VecScatterBegin 7 1.0 2.5071e-04 1.0 0.00e+00 0.0 4.2e+01 5.8e+03 0.0e+00 0 0 47 44 0 0 0 47 44 0 0 -VecScatterEnd 7 1.0 1.7771e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 7.3037e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 3 1.0 3.1003e-04 1.1 0.00e+00 0.0 3.6e+01 8.4e+02 0.0e+00 0 0 40 6 0 0 0 40 6 0 0 -SFPack 7 1.0 8.1914e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 7 1.0 7.2400e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 8.6517e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 1.5203e-01 1.0 2.80e+06 1.0 4.2e+01 5.8e+03 0.0e+00 2 80 47 44 0 2 80 47 44 0 55 -PCSetUp 1 1.0 2.5973e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 3 0 0 0 6 3 0 0 0 13 0 -PCApply 8 1.0 1.4584e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 +BuildTwoSided 5 1.0 1.8975e-02 88.6 0.00e+00 0.0 2.4e+01 4.0e+00 0.0e+00 0 0 27 0 0 0 0 27 0 0 0 +BuildTwoSidedF 2 1.0 1.8911e-02 70.2 0.00e+00 0.0 1.2e+01 2.2e+04 0.0e+00 0 0 13 50 0 0 0 13 50 0 0 +MatMult 7 1.0 8.1601e-03 1.2 1.94e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 702 +MatConvert 1 1.0 1.1554e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 6 0 0 0 0 13 0 +MatAssemblyBegin 5 1.0 2.1984e-02 5.5 0.00e+00 0.0 1.2e+01 2.2e+04 0.0e+00 0 0 13 50 0 0 0 13 50 0 0 +MatAssemblyEnd 5 1.0 9.9663e-03 1.1 3.82e+03 1.3 1.2e+01 1.4e+03 1.0e+00 0 0 13 3 3 0 0 13 3 7 1 +MatGetRowIJ 4 1.0 8.7190e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 3.7174e-04 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetPreallCOO 2 1.0 3.2366e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetValuesCOO 2 1.0 2.6256e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecTDot 16 1.0 1.9948e-03 2.9 3.23e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 9 0 0 0 0 9 0 0 0 478 +VecNorm 8 1.0 1.5655e-03 4.6 1.61e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 0 5 0 0 0 304 +VecCopy 2 1.0 5.6036e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 1.4855e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 4.9811e-04 1.1 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1675 +VecAYPX 6 1.0 2.4094e-04 1.1 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1484 +VecScatterBegin 7 1.0 3.4525e-04 1.1 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 +VecScatterEnd 7 1.0 2.0292e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 8.3612e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 3 1.0 4.8214e-04 1.1 0.00e+00 0.0 3.6e+01 8.1e+02 0.0e+00 0 0 40 6 0 0 0 40 6 0 0 +SFPack 7 1.0 1.1785e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 7 1.0 8.9000e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 1.4337e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 3.7077e-01 1.0 2.83e+06 1.0 4.2e+01 5.6e+03 0.0e+00 3 80 47 45 0 3 80 47 45 0 23 +PCSetUp 1 1.0 4.2305e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 4 0 0 0 6 4 0 0 0 13 0 +PCApply 8 1.0 3.6040e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -3985,9 +4021,9 @@ Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== -Average time to get PetscTime(): 1.12e-07 -Average time for MPI_Barrier(): 4.6398e-06 -Average time for zero size MPI_Send(): 6.06633e-06 +Average time to get PetscTime(): 1.46e-07 +Average time for MPI_Barrier(): 4.4596e-06 +Average time for zero size MPI_Send(): 6.67967e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) @@ -4044,69 +4080,69 @@ Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line ==== poisson strong scaling (3 processes with ndofs=30000) ==== -[2024-12-30 13:24:11.902] [RANK: 0] [info] Using partitioner with 216000 cell data -[2024-12-30 13:24:11.904] [RANK: 0] [info] Compute partition of cells across ranks -[2024-12-30 13:24:11.904] [RANK: 0] [info] Building mesh dual graph -[2024-12-30 13:24:11.904] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-12-30 13:24:12.004] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-12-30 13:24:12.005] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:12.005] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:12.005] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-12-30 13:24:12.010] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) -[2024-12-30 13:24:12.010] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-12-30 13:24:20.396] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-12-30 13:24:20.413] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-12-30 13:24:20.457] [RANK: 0] [info] Extract basic topology: 212760->212760 -[2024-12-30 13:24:20.457] [RANK: 0] [info] Build local dual graph -[2024-12-30 13:24:20.457] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-12-30 13:24:20.552] [RANK: 0] [info] GPS pseudo-diameter:(167) 49406-1233 -[2024-12-30 13:24:20.566] [RANK: 0] [info] Create topology (single cell type) -[2024-12-30 13:24:20.566] [RANK: 0] [info] Create topology (generalised) -[2024-12-30 13:24:20.618] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-12-30 13:24:20.618] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-12-30 13:24:20.642] [RANK: 0] [info] Compute ghost indices -[2024-12-30 13:24:20.642] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-12-30 13:24:20.642] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:20.649] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-12-30 13:24:20.649] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:20.678] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:20.679] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:20.679] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:20.679] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:20.691] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-12-30 13:24:20.691] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-12-30 13:24:20.691] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-12-30 13:24:20.693] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:20.693] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:20.693] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-12-30 13:24:20.694] [RANK: 0] [info] Checking required entities per dimension -[2024-12-30 13:24:20.694] [RANK: 0] [info] Cell type: 0 dofmap: 53190x4 -[2024-12-30 13:24:20.708] [RANK: 0] [info] Global index computation -[2024-12-30 13:24:20.708] [RANK: 0] [info] Got 1 index_maps -[2024-12-30 13:24:20.709] [RANK: 0] [info] Get global indices -[2024-12-30 13:24:20.709] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:20.709] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:32.305] [RANK: 0] [info] Using partitioner with 216000 cell data +[2024-12-31 15:30:32.310] [RANK: 0] [info] Compute partition of cells across ranks +[2024-12-31 15:30:32.310] [RANK: 0] [info] Building mesh dual graph +[2024-12-31 15:30:32.310] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-12-31 15:30:32.455] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2024-12-31 15:30:32.466] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:32.466] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:32.466] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2024-12-31 15:30:32.473] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) +[2024-12-31 15:30:32.473] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2024-12-31 15:30:42.203] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-12-31 15:30:42.210] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-12-31 15:30:42.243] [RANK: 0] [info] Extract basic topology: 212764->212764 +[2024-12-31 15:30:42.243] [RANK: 0] [info] Build local dual graph +[2024-12-31 15:30:42.243] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2024-12-31 15:30:42.402] [RANK: 0] [info] GPS pseudo-diameter:(162) 49373-1929 +[2024-12-31 15:30:42.423] [RANK: 0] [info] Create topology (single cell type) +[2024-12-31 15:30:42.423] [RANK: 0] [info] Create topology (generalised) +[2024-12-31 15:30:42.437] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2024-12-31 15:30:42.438] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2024-12-31 15:30:42.466] [RANK: 0] [info] Compute ghost indices +[2024-12-31 15:30:42.466] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2024-12-31 15:30:42.466] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:42.473] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-12-31 15:30:42.474] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:42.501] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:42.503] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:42.503] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:42.503] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:42.516] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2024-12-31 15:30:42.516] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2024-12-31 15:30:42.516] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2024-12-31 15:30:42.517] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:42.517] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:42.517] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2024-12-31 15:30:42.519] [RANK: 0] [info] Checking required entities per dimension +[2024-12-31 15:30:42.520] [RANK: 0] [info] Cell type: 0 dofmap: 53191x4 +[2024-12-31 15:30:42.541] [RANK: 0] [info] Global index computation +[2024-12-31 15:30:42.541] [RANK: 0] [info] Got 1 index_maps +[2024-12-31 15:30:42.542] [RANK: 0] [info] Get global indices +[2024-12-31 15:30:42.543] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:42.544] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times -[2024-12-30 13:24:20.715] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-12-30 13:24:20.826] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:20.830] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:20.941] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:20.941] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:20.946] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-12-30 13:24:20.947] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-12-30 13:24:20.951] [RANK: 0] [info] Checking required entities per dimension -[2024-12-30 13:24:20.951] [RANK: 0] [info] Cell type: 0 dofmap: 53190x4 -[2024-12-30 13:24:20.965] [RANK: 0] [info] Global index computation -[2024-12-30 13:24:20.965] [RANK: 0] [info] Got 1 index_maps -[2024-12-30 13:24:20.966] [RANK: 0] [info] Get global indices -[2024-12-30 13:24:20.967] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-12-30 13:24:20.967] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-12-30 13:24:20.968] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-12-30 13:24:20.969] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-12-30 13:24:20.969] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-12-30 13:24:21.017] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-12-30 13:24:21.017] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) -[2024-12-30 13:24:21.064] [RANK: 0] [info] Column ghost size increased from 436 to 1227 +[2024-12-31 15:30:42.551] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2024-12-31 15:30:42.710] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:42.714] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:42.855] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:42.855] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:42.864] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-12-31 15:30:42.864] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2024-12-31 15:30:42.870] [RANK: 0] [info] Checking required entities per dimension +[2024-12-31 15:30:42.870] [RANK: 0] [info] Cell type: 0 dofmap: 53191x4 +[2024-12-31 15:30:42.892] [RANK: 0] [info] Global index computation +[2024-12-31 15:30:42.892] [RANK: 0] [info] Got 1 index_maps +[2024-12-31 15:30:42.893] [RANK: 0] [info] Get global indices +[2024-12-31 15:30:42.895] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2024-12-31 15:30:42.895] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2024-12-31 15:30:42.897] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-12-31 15:30:42.898] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2024-12-31 15:30:42.898] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2024-12-31 15:30:42.973] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2024-12-31 15:30:42.973] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) +[2024-12-31 15:30:43.040] [RANK: 0] [info] Column ghost size increased from 442 to 1238 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -4120,7 +4156,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -[2024-12-30 13:24:21.215] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2024-12-31 15:30:43.246] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -4164,43 +4200,43 @@ total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines -[MPI_MAX] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 8.820000 8.820000 -Build dofmap data | 2 0.015000 0.030000 -Build sparsity | 1 0.020000 0.020000 -Compute connectivity 2-0 | 1 0.000000 0.000000 -Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.230000 0.230000 -Compute graph partition (SCOTCH) | 1 8.380000 8.380000 -Compute local part of mesh dual graph (mixed) | 2 0.100000 0.200000 -Compute local-to-local map | 1 0.010000 0.010000 -Compute non-local part of mesh dual graph | 1 0.000000 0.000000 -Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.100000 0.100000 -Distribute row-wise data (scalable) | 1 0.010000 0.010000 -GPS: create_level_structure | 2 0.002500 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 -Init MPI | 1 0.030000 0.030000 -Init PETSc | 1 0.000000 0.000000 -Init dofmap from element dofmap | 2 0.015000 0.030000 -Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 0.490000 0.490000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 8.380000 8.380000 -SparsityPattern::finalize | 1 0.030000 0.030000 -Topology: create | 1 0.110000 0.110000 -Topology: determine shared index ownership | 1 0.040000 0.040000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble | 1 0.240000 0.240000 -ZZZ Assemble matrix | 1 0.110000 0.110000 -ZZZ Assemble vector | 1 0.020000 0.020000 -ZZZ Create Mesh | 1 8.820000 8.820000 -ZZZ Create RHS function | 1 0.060000 0.060000 -ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.230000 0.230000 -ZZZ FunctionSpace | 1 0.020000 0.020000 -ZZZ Solve | 1 0.500000 0.500000 +[MPI_MAX] Summary of timings | reps wall avg wall tot +--------------------------------------------------------------------------------------------------------- +Build BoxMesh (tetrahedra) | 1 10.250000 10.250000 +Build dofmap data | 2 0.030000 0.060000 +Build sparsity | 1 0.030000 0.030000 +Compute connectivity 2-0 | 1 0.000000 0.000000 +Compute dof reordering map | 2 0.010000 0.020000 +Compute entities of dim = 2 | 1 0.320000 0.320000 +Compute graph partition (SCOTCH) | 1 9.730000 9.730000 +Compute local part of mesh dual graph (mixed) | 2 0.150000 0.300000 +Compute local-to-local map | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.010000 0.010000 +Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.080000 0.080000 +Distribute row-wise data (scalable) | 1 0.000000 0.000000 +GPS: create_level_structure | 5 0.005000 0.020000 +Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 +Init MPI | 1 0.020000 0.020000 +Init PETSc | 1 0.010000 0.010000 +Init dofmap from element dofmap | 2 0.020000 0.040000 +Init logging | 1 0.000000 0.000000 +PETSc Krylov solver | 1 0.820000 0.820000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 +SCOTCH: call SCOTCH_dgraphPart | 1 9.720000 9.720000 +SparsityPattern::finalize | 1 0.040000 0.040000 +Topology: create | 1 0.090000 0.090000 +Topology: determine shared index ownership | 1 0.010000 0.010000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 +ZZZ Assemble | 1 0.340000 0.340000 +ZZZ Assemble matrix | 1 0.160000 0.160000 +ZZZ Assemble vector | 1 0.030000 0.030000 +ZZZ Create Mesh | 1 10.250000 10.250000 +ZZZ Create RHS function | 1 0.080000 0.080000 +ZZZ Create boundary conditions | 1 0.000000 0.000000 +ZZZ Create facets and facet->cell connectivity | 1 0.320000 0.320000 +ZZZ FunctionSpace | 1 0.030000 0.030000 +ZZZ Solve | 1 0.820000 0.820000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -4209,16 +4245,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt64z with 3 processes, by pbuilder1 on Mon Dec 30 13:24:21 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Tue Dec 31 15:30:44 2024 Using Petsc Release Version 3.22.2, Nov 28, 2024 Max Max/Min Avg Total -Time (sec): 9.814e+00 1.000 9.814e+00 +Time (sec): 1.177e+01 1.000 1.177e+01 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 3.557e+06 1.030 3.489e+06 1.047e+07 -Flops/sec: 3.625e+05 1.030 3.555e+05 1.067e+06 +Flops: 3.568e+06 1.035 3.489e+06 1.047e+07 +Flops/sec: 3.032e+05 1.035 2.965e+05 8.894e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 -MPI Msg Len (bytes): 1.821e+05 1.177 5.750e+03 5.175e+05 +MPI Msg Len (bytes): 1.881e+05 1.210 5.800e+03 5.220e+05 MPI Reductions: 3.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -4227,7 +4263,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 9.8140e+00 100.0% 1.0468e+07 100.0% 9.000e+01 100.0% 5.750e+03 100.0% 1.500e+01 46.9% + 0: Main Stage: 1.1769e+01 100.0% 1.0468e+07 100.0% 9.000e+01 100.0% 5.800e+03 100.0% 1.500e+01 46.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -4251,32 +4287,32 @@ --- Event Stage 0: Main Stage -BuildTwoSided 5 1.0 7.6335e-03 44.8 0.00e+00 0.0 2.4e+01 4.0e+00 0.0e+00 0 0 27 0 0 0 0 27 0 0 0 -BuildTwoSidedF 2 1.0 7.5785e-03 42.9 0.00e+00 0.0 1.2e+01 2.1e+04 0.0e+00 0 0 13 50 0 0 0 13 50 0 0 -MatMult 7 1.0 4.0075e-03 1.1 1.95e+06 1.0 4.2e+01 5.5e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 1430 -MatConvert 1 1.0 7.3567e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 6 0 0 0 0 13 0 -MatAssemblyBegin 5 1.0 9.9595e-03 3.1 0.00e+00 0.0 1.2e+01 2.1e+04 0.0e+00 0 0 13 50 0 0 0 13 50 0 0 -MatAssemblyEnd 5 1.0 6.2503e-03 1.0 3.60e+03 1.1 1.2e+01 1.4e+03 1.0e+00 0 0 13 3 3 0 0 13 3 7 2 -MatGetRowIJ 4 1.0 5.2800e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 2.7235e-04 3.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetPreallCOO 2 1.0 2.3901e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetValuesCOO 2 1.0 1.4643e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecTDot 16 1.0 9.5928e-04 2.1 3.24e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 9 0 0 0 0 9 0 0 0 994 -VecNorm 8 1.0 6.4426e-04 2.1 1.62e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 0 5 0 0 0 740 -VecCopy 2 1.0 3.9399e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 8.8357e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 2.8599e-04 1.0 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2917 -VecAYPX 6 1.0 1.5140e-04 1.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 2361 -VecScatterBegin 7 1.0 2.5419e-04 1.0 0.00e+00 0.0 4.2e+01 5.5e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 -VecScatterEnd 7 1.0 1.7539e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 7.0597e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 3 1.0 3.0811e-04 1.1 0.00e+00 0.0 3.6e+01 8.0e+02 0.0e+00 0 0 40 6 0 0 0 40 6 0 0 -SFPack 7 1.0 9.0718e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 7 1.0 6.1600e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 7.6877e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 1.8968e-01 1.0 2.84e+06 1.0 4.2e+01 5.5e+03 0.0e+00 2 80 47 45 0 2 80 47 45 0 44 -PCSetUp 1 1.0 3.0323e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 3 0 0 0 6 3 0 0 0 13 0 -PCApply 8 1.0 1.8403e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 +BuildTwoSided 5 1.0 1.1459e-02 52.5 0.00e+00 0.0 2.4e+01 4.0e+00 0.0e+00 0 0 27 0 0 0 0 27 0 0 0 +BuildTwoSidedF 2 1.0 1.1391e-02 49.3 0.00e+00 0.0 1.2e+01 2.2e+04 0.0e+00 0 0 13 50 0 0 0 13 50 0 0 +MatMult 7 1.0 7.5420e-03 1.1 1.95e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 760 +MatConvert 1 1.0 1.1183e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 6 0 0 0 0 13 0 +MatAssemblyBegin 5 1.0 1.4230e-02 3.8 0.00e+00 0.0 1.2e+01 2.2e+04 0.0e+00 0 0 13 50 0 0 0 13 50 0 0 +MatAssemblyEnd 5 1.0 9.1772e-03 1.1 3.83e+03 1.2 1.2e+01 1.4e+03 1.0e+00 0 0 13 3 3 0 0 13 3 7 1 +MatGetRowIJ 4 1.0 8.3590e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 3.7122e-04 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetPreallCOO 2 1.0 3.1554e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetValuesCOO 2 1.0 2.5345e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecTDot 16 1.0 1.5056e-03 2.2 3.24e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 9 0 0 0 0 9 0 0 0 633 +VecNorm 8 1.0 1.2638e-03 3.8 1.62e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 5 0 0 0 0 5 0 0 0 377 +VecCopy 2 1.0 4.6876e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 1.6042e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 4.6986e-04 1.4 2.84e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1775 +VecAYPX 6 1.0 2.6083e-04 1.4 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1371 +VecScatterBegin 7 1.0 2.9149e-04 1.0 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 +VecScatterEnd 7 1.0 2.0470e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 8.3253e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 3 1.0 4.3316e-04 1.0 0.00e+00 0.0 3.6e+01 8.1e+02 0.0e+00 0 0 40 6 0 0 0 40 6 0 0 +SFPack 7 1.0 8.1032e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 7 1.0 9.1200e-06 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 1.4497e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 3.9286e-01 1.0 2.85e+06 1.0 4.2e+01 5.6e+03 0.0e+00 3 80 47 45 0 3 80 47 45 0 21 +PCSetUp 1 1.0 4.2290e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 4 0 0 0 6 4 0 0 0 13 0 +PCApply 8 1.0 3.8312e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -4293,9 +4329,9 @@ Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== -Average time to get PetscTime(): 1.12e-07 -Average time for MPI_Barrier(): 4.2878e-06 -Average time for zero size MPI_Send(): 5.47967e-06 +Average time to get PetscTime(): 1.4e-07 +Average time for MPI_Barrier(): 4.3996e-06 +Average time for zero size MPI_Send(): 5.97933e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) @@ -4356,7 +4392,7 @@ dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4392,8 +4428,8 @@ dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src -dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_armhf.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.9.0-2_armhf.deb'. +dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_armhf.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.9.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.9.0-2_armhf.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.9.0-2_armhf.changes @@ -4402,12 +4438,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6801/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6801/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/22061 and its subdirectories -I: Current time: Mon Dec 30 13:24:42 -12 2024 -I: pbuilder-time-stamp: 1735608282 +I: removing directory /srv/workspace/pbuilder/6801 and its subdirectories +I: Current time: Tue Dec 31 15:31:15 +14 2024 +I: pbuilder-time-stamp: 1735608675