Diff of the two buildlogs: -- --- b1/build.log 2024-03-24 23:14:07.794491630 +0000 +++ b2/build.log 2024-03-24 23:15:14.759638570 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 24 11:12:34 -12 2024 -I: pbuilder-time-stamp: 1711321954 +I: Current time: Mon Mar 25 13:14:17 +14 2024 +I: pbuilder-time-stamp: 1711322057 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/29007/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13943/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 24 23:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13943/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13943/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='2c865c9417274bcfa3e71fface09db9e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='29007' - PS1='# ' - PS2='> ' + INVOCATION_ID=8d25f245fdb84f1880e6d6ce8b745125 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=13943 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yULCsnGS/pbuilderrc_NoQ6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yULCsnGS/b1 --logfile b1/build.log dextractor_1.0-6.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yULCsnGS/pbuilderrc_fvxF --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yULCsnGS/b2 --logfile b2/build.log dextractor_1.0-6.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux ff4a 6.1.0-18-armmp-lpae #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 23 11:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/29007/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 23 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/13943/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -169,7 +201,7 @@ Get: 55 http://deb.debian.org/debian trixie/main armhf libjpeg-dev armhf 1:2.1.5-2+b2 [72.1 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.1.5-1 [2152 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libhdf5-dev armhf 1.10.10+repack-3+b1 [2611 kB] -Fetched 28.1 MB in 2s (15.4 MB/s) +Fetched 28.1 MB in 0s (75.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19577 files and directories currently installed.) @@ -413,7 +445,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/dextractor-1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dextractor_1.0-6_source.changes +I: user script /srv/workspace/pbuilder/13943/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/13943/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/dextractor-1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dextractor_1.0-6_source.changes dpkg-buildpackage: info: source package dextractor dpkg-buildpackage: info: source version 1.0-6 dpkg-buildpackage: info: source distribution unstable @@ -425,7 +461,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/dextractor-1.0' dh_auto_clean - make -j3 clean + make -j4 clean make[2]: Entering directory '/build/reproducible-path/dextractor-1.0' rm -f dextract dexta undexta dexqv undexqv dextract.tar.gz rm -fr *.dSYM @@ -442,12 +478,13 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/dextractor-1.0' dh_auto_build -- ARGS="-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial" - make -j3 "INSTALL=install --strip-program=true" "ARGS=-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial" + make -j4 "INSTALL=install --strip-program=true" "ARGS=-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial" make[2]: Entering directory '/build/reproducible-path/dextractor-1.0' -#gcc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial/ -L/usr/lib/armv7l-linux-gnu/hdf5/serial/ -o dextract dextract.c DB.c QV.c -lhdf5 +#gcc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial/ -L/usr/lib/aarch64-linux-gnu/hdf5/serial/ -o dextract dextract.c DB.c QV.c -lhdf5 cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexta dexta.c DB.c QV.c -cc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o dextract dextract.c DB.c QV.c -lhdf5 cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexta undexta.c DB.c QV.c +cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexqv dexqv.c DB.c QV.c +cc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o dextract dextract.c DB.c QV.c -lhdf5 In function ‘writeBaxReads’, inlined from ‘main’ at dextract.c:603:13: dextract.c:399:30: warning: ‘b.delLimit’ may be used uninitialized [-Wmaybe-uninitialized] @@ -484,6 +521,24 @@ DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ +DB.c: In function ‘Open_DB’: +DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] + 530 | free(reads); + | ^~~~~~~~~~~ +In function ‘Malloc’, + inlined from ‘Open_DB’ at DB.c:524:30: +DB.c:85:12: note: returned from ‘malloc’ + 85 | if ((p = malloc(size)) == NULL) + | ^~~~~~~~~~~~ +DB.c: In function ‘Read_All_Sequences’: +DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] + 1455 | free(seq); + | ^~~~~~~~~ +In function ‘Malloc’, + inlined from ‘Read_All_Sequences’ at DB.c:1432:18: +DB.c:85:12: note: returned from ‘malloc’ + 85 | if ((p = malloc(size)) == NULL) + | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); @@ -518,6 +573,14 @@ QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 211 | node[value].lft = (HTree *) (uint64) i; | ^ +QV.c: In function ‘Build_Table’: +QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] + 164 | { uint64 symbol = (uint64) (node->lft); + | ^ +QV.c: In function ‘Huffman’: +QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] + 211 | node[value].lft = (HTree *) (uint64) i; + | ^ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); @@ -535,7 +598,6 @@ QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 211 | node[value].lft = (HTree *) (uint64) i; | ^ -cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexqv dexqv.c DB.c QV.c cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexqv undexqv.c DB.c QV.c DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] @@ -546,24 +608,6 @@ DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ -DB.c: In function ‘Open_DB’: -DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] - 530 | free(reads); - | ^~~~~~~~~~~ -In function ‘Malloc’, - inlined from ‘Open_DB’ at DB.c:524:30: -DB.c:85:12: note: returned from ‘malloc’ - 85 | if ((p = malloc(size)) == NULL) - | ^~~~~~~~~~~~ -DB.c: In function ‘Read_All_Sequences’: -DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] - 1455 | free(seq); - | ^~~~~~~~~ -In function ‘Malloc’, - inlined from ‘Read_All_Sequences’ at DB.c:1432:18: -DB.c:85:12: note: returned from ‘malloc’ - 85 | if ((p = malloc(size)) == NULL) - | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); @@ -581,21 +625,13 @@ QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 211 | node[value].lft = (HTree *) (uint64) i; | ^ -QV.c: In function ‘Build_Table’: -QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] - 164 | { uint64 symbol = (uint64) (node->lft); - | ^ -QV.c: In function ‘Huffman’: -QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] - 211 | node[value].lft = (HTree *) (uint64) i; - | ^ make[2]: Leaving directory '/build/reproducible-path/dextractor-1.0' make[1]: Leaving directory '/build/reproducible-path/dextractor-1.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dextractor/ - make -j3 install DESTDIR=/build/reproducible-path/dextractor-1.0/debian/dextractor AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + make -j4 install DESTDIR=/build/reproducible-path/dextractor-1.0/debian/dextractor AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dextractor-1.0' mkdir bin/ cp dextract dexta undexta dexqv undexqv bin/ @@ -627,12 +663,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/13943/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13943/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/29007 and its subdirectories -I: Current time: Sun Mar 24 11:14:03 -12 2024 -I: pbuilder-time-stamp: 1711322043 +I: removing directory /srv/workspace/pbuilder/13943 and its subdirectories +I: Current time: Mon Mar 25 13:15:10 +14 2024 +I: pbuilder-time-stamp: 1711322110