Diff of the two buildlogs: -- --- b1/build.log 2024-03-25 05:31:10.286105037 +0000 +++ b2/build.log 2024-03-25 05:40:24.850445225 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 24 17:26:08 -12 2024 -I: pbuilder-time-stamp: 1711344368 +I: Current time: Mon Mar 25 19:31:28 +14 2024 +I: pbuilder-time-stamp: 1711344688 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying skip_tests_touching_security_sensitive_fields.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/15934/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/30355/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 25 05:32 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/30355/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/30355/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='71c41a33aa064cf29e63883bee332467' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='15934' - PS1='# ' - PS2='> ' + INVOCATION_ID=b3c0b9b31ef34e3daf2867f84dd0c0ae + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=30355 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hAjzCjMV/pbuilderrc_A9Nm --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hAjzCjMV/b1 --logfile b1/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hAjzCjMV/pbuilderrc_7QRx --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hAjzCjMV/b2 --logfile b2/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64c 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 22 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/15934/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 24 11:27 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/30355/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -311,7 +343,7 @@ Get: 179 http://deb.debian.org/debian trixie/main armhf libjacoco-java all 0.8.11-1 [643 kB] Get: 180 http://deb.debian.org/debian trixie/main armhf libjimfs-java all 1.1-6 [191 kB] Get: 181 http://deb.debian.org/debian trixie/main armhf libtruth-java all 0.39-1 [164 kB] -Fetched 214 MB in 8s (27.2 MB/s) +Fetched 214 MB in 23s (9494 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19577 files and directories currently installed.) @@ -1245,7 +1277,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/30355/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/30355/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package capsule-nextflow dpkg-buildpackage: info: source version 1.1.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1268,7 +1304,7 @@ dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=3 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=4 jar openjdk version "17.0.10" 2024-01-16 OpenJDK Runtime Environment (build 17.0.10+7-Debian-1) OpenJDK Server VM (build 17.0.10+7-Debian-1, mixed mode, sharing) @@ -1276,18 +1312,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 4.485 secs. -The client will now receive all logging from the daemon (pid: 29836). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-29836.out.log +An attempt to start the daemon took 9.781 secs. +The client will now receive all logging from the daemon (pid: 4704). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-4704.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 3 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@9103da -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@9103da -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1650bfd +Using 4 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@10417b7 +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@10417b7 +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@122220c Starting Build Compiling initialization script '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f54bd2 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@17512d8 Compiling initialization script '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1310,98 +1346,98 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@40fca9 +Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@9f9c0b Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1650bfd -Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@937143 -Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1bf12c4 -:capsule-util:compileJava (Thread[Daemon worker,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@122220c +Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@13299d1 +Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@20adde :capsule:compileJava (Thread[Task worker for ':',5,main]) started. -:capsule:compileJava +:capsule-util:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.028 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.027 secs. -Up-to-date check for task ':capsule:compileJava' took 0.104 secs. It is not up-to-date because: +:capsule:compileJava +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.048 secs. +Putting task artifact state for task ':capsule:compileJava' into context took 0.047 secs. +Up-to-date check for task ':capsule:compileJava' took 0.194 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileJava'. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. -Up-to-date check for task ':capsule-util:compileJava' took 0.388 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileJava' took 0.653 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileJava'. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. +/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java:5712: warning: [removal] SecurityManager in java.lang has been deprecated and marked for removal + final SecurityManager security = System.getSecurityManager(); + ^ +/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java:5712: warning: [removal] getSecurityManager() in System has been deprecated and marked for removal + final SecurityManager security = System.getSecurityManager(); + ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:capsule-util:compileJava (Thread[Daemon worker,5,main]) completed. Took 12.385 secs. -:capsule-util:processResources (Thread[Daemon worker,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 37.34 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:processResources' took 0.019 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:processResources' took 0.07 secs. It is not up-to-date because: No history is available. -/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java:5712: warning: [removal] SecurityManager in java.lang has been deprecated and marked for removal - final SecurityManager security = System.getSecurityManager(); - ^ -/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java:5712: warning: [removal] getSecurityManager() in System has been deprecated and marked for removal - final SecurityManager security = System.getSecurityManager(); - ^ -:capsule-util:processResources (Thread[Daemon worker,5,main]) completed. Took 0.136 secs. -:capsule-util:classes (Thread[Daemon worker,5,main]) started. +:capsule-util:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.432 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. -:capsule-util:classes (Thread[Daemon worker,5,main]) completed. Took 0.003 secs. -:capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) started. +:capsule-util:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.026 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:debianMavenPom' took 0.004 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:debianMavenPom' took 0.021 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom -:capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) completed. Took 0.315 secs. -:capsule-util:jar (Thread[Daemon worker,5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 1.696 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:jar' took 0.037 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:jar' took 0.236 secs. It is not up-to-date because: No history is available. -:capsule-util:jar (Thread[Daemon worker,5,main]) completed. Took 0.367 secs. Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 2 warnings -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 13.672 secs. +:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 40.353 secs. :capsule:processResources (Thread[Task worker for ':',5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.015 secs. -:capsule:classes (Thread[Task worker for ':',5,main]) started. +:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.023 secs. +:capsule:classes (Thread[Daemon worker,5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.002 secs. -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. +:capsule:classes (Thread[Daemon worker,5,main]) completed. Took 0.007 secs. +:capsule:debianMavenPom (Thread[Daemon worker,5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule:debianMavenPom' took 0.005 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:debianMavenPom' took 0.018 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.044 secs. -:capsule:jar (Thread[Task worker for ':',5,main]) started. +:capsule:debianMavenPom (Thread[Daemon worker,5,main]) completed. Took 0.213 secs. +:capsule:jar (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule:jar' took 0.01 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:jar' took 0.091 secs. It is not up-to-date because: No history is available. -:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.067 secs. +:capsule:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.537 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 1.616 secs. -BUILD SUCCESSFUL in 44s +BUILD SUCCESSFUL in 1m 40s 7 actionable tasks: 7 executed dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=3 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=4 test openjdk version "17.0.10" 2024-01-16 OpenJDK Runtime Environment (build 17.0.10+7-Debian-1) OpenJDK Server VM (build 17.0.10+7-Debian-1, mixed mode, sharing) @@ -1409,17 +1445,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 3.032 secs. -The client will now receive all logging from the daemon (pid: 30816). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-30816.out.log +An attempt to start the daemon took 8.464 secs. +The client will now receive all logging from the daemon (pid: 4925). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-4925.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 3 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1bb439b -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1bb439b -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@17a24fb +Using 4 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@9df19e +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@9df19e +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@aabfa8 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6f0934 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f1607 Settings evaluated using settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/build.gradle'. Included projects: [root project 'capsule', project ':capsule', project ':capsule-util'] @@ -1437,84 +1473,84 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@822f31 +Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1aef700 Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar', task ':capsule:compileTestJava', task ':capsule:processTestResources', task ':capsule:testClasses', task ':capsule:test', task ':capsule-util:compileTestJava', task ':capsule-util:processTestResources', task ':capsule-util:testClasses', task ':capsule-util:test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@17a24fb -Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@c4a572 -Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@18e3177 +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@aabfa8 +Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3436cc +Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f2e44a :capsule:compileJava (Thread[Task worker for ':',5,main]) started. :capsule:compileJava -:capsule-util:compileJava (Thread[Daemon worker,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.014 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.014 secs. -Skipping task ':capsule:compileJava' as it is up-to-date (took 0.106 secs). +Putting task artifact state for task ':capsule:compileJava' into context took 0.041 secs. +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.043 secs. +Skipping task ':capsule:compileJava' as it is up-to-date (took 0.229 secs). :capsule:compileJava UP-TO-DATE -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.203 secs. +:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.49 secs. :capsule:processResources (Thread[Task worker for ':',5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.049 secs. +:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.06 secs. :capsule:classes (Thread[Task worker for ':',5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. :capsule:classes UP-TO-DATE -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.011 secs. +:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.015 secs. :capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.009 secs). +Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.046 secs). :capsule:debianMavenPom UP-TO-DATE -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.023 secs. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.093 secs. :capsule:jar (Thread[Task worker for ':',5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Skipping task ':capsule:jar' as it is up-to-date (took 0.022 secs). +Skipping task ':capsule:jar' as it is up-to-date (took 0.089 secs). :capsule:jar UP-TO-DATE -:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.043 secs. +:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.147 secs. :capsule:processTestResources (Thread[Task worker for ':',5,main]) started. :capsule:processTestResources Putting task artifact state for task ':capsule:processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/resources', not found Skipping task ':capsule:processTestResources' as it has no source files and no previous output files. :capsule:processTestResources NO-SOURCE -:capsule:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.006 secs. -Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.352 secs). +:capsule:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.042 secs. +Skipping task ':capsule-util:compileJava' as it is up-to-date (took 1.114 secs). :capsule-util:compileJava UP-TO-DATE -:capsule-util:compileJava (Thread[Daemon worker,5,main]) completed. Took 0.435 secs. -:capsule-util:processResources (Thread[Daemon worker,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 1.326 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.014 secs). +Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.045 secs). :capsule-util:processResources UP-TO-DATE -:capsule-util:processResources (Thread[Daemon worker,5,main]) completed. Took 0.032 secs. -:capsule-util:classes (Thread[Daemon worker,5,main]) started. +:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.085 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. :capsule-util:classes UP-TO-DATE -:capsule-util:classes (Thread[Daemon worker,5,main]) completed. Took 0.002 secs. -:capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) started. +:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.017 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.006 secs). +Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.026 secs). :capsule-util:debianMavenPom UP-TO-DATE -:capsule-util:debianMavenPom (Thread[Daemon worker,5,main]) completed. Took 0.012 secs. -:capsule-util:jar (Thread[Daemon worker,5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.051 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Skipping task ':capsule-util:jar' as it is up-to-date (took 0.032 secs). +Skipping task ':capsule-util:jar' as it is up-to-date (took 0.044 secs). :capsule-util:jar UP-TO-DATE -:capsule-util:jar (Thread[Daemon worker,5,main]) completed. Took 0.048 secs. -:capsule:compileTestJava (Thread[Daemon worker,5,main]) started. +:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.084 secs. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:compileTestJava Putting task artifact state for task ':capsule:compileTestJava' into context took 0.0 secs. :capsule-util:compileTestJava (Thread[Task worker for ':',5,main]) started. :capsule-util:compileTestJava Putting task artifact state for task ':capsule-util:compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@17b456c +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1bde3d2 Loading the Maven rules... Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x @@ -1523,71 +1559,74 @@ Passing through com.google.truth:truth-parent:jar:debian Passing through com.google.truth:truth-parent:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian - Passing through com.google.jimfs:jimfs-parent:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian + Passing through com.google.jimfs:jimfs-parent:jar:debian + Passing through com.google.jimfs:jimfs-parent:jar:debian Ignoring org.jooq:joor:jar:0.9.6 Passing through org.hamcrest:hamcrest:jar:debian - Passing through org.hamcrest:hamcrest:jar:debian Passing through com.google.guava:guava:jar:debian Passing through com.google.guava:guava:jar:debian Passing through com.google.guava:guava-parent:jar:debian Passing through com.google.guava:guava-parent:jar:debian Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian - Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian -Up-to-date check for task ':capsule-util:compileTestJava' took 5.103 secs. It is not up-to-date because: + Passing through com.google.errorprone:error_prone_annotations:jar:debian +Up-to-date check for task ':capsule-util:compileTestJava' took 21.044 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 -Up-to-date check for task ':capsule:compileTestJava' took 5.17 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:compileTestJava' took 21.295 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileTestJava'. +Compiling with JDK Java compiler API. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. -Compiling with JDK Java compiler API. -:capsule-util:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 10.425 secs. +:capsule-util:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 39.464 secs. :capsule-util:processTestResources (Thread[Task worker for ':',5,main]) started. :capsule-util:processTestResources Putting task artifact state for task ':capsule-util:processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/src/test/resources', not found Skipping task ':capsule-util:processTestResources' as it has no source files and no previous output files. :capsule-util:processTestResources NO-SOURCE -:capsule-util:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.007 secs. +:capsule-util:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.031 secs. :capsule-util:testClasses (Thread[Task worker for ':',5,main]) started. :capsule-util:testClasses Skipping task ':capsule-util:testClasses' as it has no actions. -:capsule-util:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:capsule-util:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.02 secs. :capsule-util:test (Thread[Task worker for ':',5,main]) started. :capsule-util:test Putting task artifact state for task ':capsule-util:test' into context took 0.0 secs. Replacing org.jacoco:org.jacoco.agent:jar:0.7.9 -> org.jacoco:org.jacoco.agent:jar:debian Passing through org.jacoco:org.jacoco.build:jar:debian -Up-to-date check for task ':capsule-util:test' took 1.646 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:test' took 5.073 secs. It is not up-to-date because: No history is available. +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_34b6726e22d9e6bf60a1fc5af9ddf8d7/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath8528100866762552783txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Successfully started process 'Gradle Test Executor 1' Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/TestCapsule.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/MyCapsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:capsule:compileTestJava (Thread[Daemon worker,5,main]) completed. Took 12.539 secs. -:capsule:testClasses (Thread[Daemon worker,5,main]) started. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 48.396 secs. +:capsule:testClasses (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:testClasses Skipping task ':capsule:testClasses' as it has no actions. -:capsule:testClasses (Thread[Daemon worker,5,main]) completed. Took 0.007 secs. -:capsule:test (Thread[Daemon worker,5,main]) started. +:capsule:testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.014 secs. +:capsule:test (Thread[Task worker for ':' Thread 2,5,main]) started. :capsule:test Putting task artifact state for task ':capsule:test' into context took 0.0 secs. -Up-to-date check for task ':capsule:test' took 0.054 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:test' took 0.298 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_34b6726e22d9e6bf60a1fc5af9ddf8d7/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath10501779539830814427txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 1' -Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_34b6726e22d9e6bf60a1fc5af9ddf8d7/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath8015646008189606448txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_34b6726e22d9e6bf60a1fc5af9ddf8d7/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath351667955084912613txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 2' Gradle Test Executor 1 started executing tests. Gradle Test Executor 2 started executing tests. -Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) +Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) +Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) + +CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED Running test: Test testEmbeddedCaplet(CapsuleTest) CapsuleTest > testEmbeddedCaplet SKIPPED @@ -1691,10 +1730,6 @@ CapsuleTest > testDependencies1 SKIPPED Running test: Test testClassPath(CapsuleTest) -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release CapsuleTest > testClassPath SKIPPED Running test: Test testPathingJar(CapsuleTest) @@ -1713,23 +1748,22 @@ CapsuleTest > testJVMArgs SKIPPED Running test: Test isJavaDir(CapsuleTest) +Gradle Test Executor 2 finished executing tests. CapsuleTest > isJavaDir SKIPPED Running test: Test testApplicationArtifact(CapsuleTest) -Gradle Test Executor 2 finished executing tests. CapsuleTest > testApplicationArtifact SKIPPED -Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) - -CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release Running test: Test testExtendClasspath(NextflowLoaderTest) Running test: Test testExtendDeps(NextflowLoaderTest) -Finished generating test XML results (0.105 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test +Finished generating test XML results (0.156 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test Generating HTML test report... -Finished generating test html results (0.205 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test -:capsule:test (Thread[Daemon worker,5,main]) completed. Took 9.378 secs. -Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) -Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) +Finished generating test html results (0.475 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test +:capsule:test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 28.86 secs. Running test: Test testAddZip2(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip3(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip4(co.paralleluniverse.capsule.JarTest) @@ -1744,17 +1778,19 @@ Running test: Test testCreateJar(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory1(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory2(co.paralleluniverse.capsule.JarTest) +Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) +Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) +Gradle Test Executor 1 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by Gradle Test Executor 1 finished executing tests. -org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Finished generating test XML results (0.003 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test +Finished generating test XML results (0.01 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test Generating HTML test report... -Finished generating test html results (0.012 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test -:capsule-util:test (Thread[Task worker for ':',5,main]) completed. Took 13.223 secs. +Finished generating test html results (0.031 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test +:capsule-util:test (Thread[Task worker for ':',5,main]) completed. Took 43.964 secs. -BUILD SUCCESSFUL in 41s +BUILD SUCCESSFUL in 2m 16s 11 actionable tasks: 4 executed, 7 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -1786,12 +1822,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/30355/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/30355/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/15934 and its subdirectories -I: Current time: Sun Mar 24 17:31:04 -12 2024 -I: pbuilder-time-stamp: 1711344664 +I: removing directory /srv/workspace/pbuilder/30355 and its subdirectories +I: Current time: Mon Mar 25 19:40:20 +14 2024 +I: pbuilder-time-stamp: 1711345220