Diff of the two buildlogs: -- --- b1/build.log 2024-10-11 15:00:57.326929205 +0000 +++ b2/build.log 2024-10-11 15:21:39.986079745 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 11 02:19:23 -12 2024 -I: pbuilder-time-stamp: 1728656363 +I: Current time: Sat Oct 12 05:01:06 +14 2024 +I: pbuilder-time-stamp: 1728658866 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying gcc14.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/25788/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/19772/tmp/hooks/D01_modify_environment starting +debug: Running on virt32z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 11 15:01 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/19772/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/19772/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='057680f7f4b5475997fcc4cead4f3e1f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='25788' - PS1='# ' - PS2='> ' + INVOCATION_ID=72d2425bfc0b409197e08f7df5a7ef3e + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=19772 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HanOwihS/pbuilderrc_dhKI --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HanOwihS/b1 --logfile b1/build.log bali-phy_3.6.1+dfsg-3.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HanOwihS/pbuilderrc_JiDQ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HanOwihS/b2 --logfile b2/build.log bali-phy_3.6.1+dfsg-3.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64b 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/25788/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/19772/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -295,7 +327,7 @@ Get: 159 http://deb.debian.org/debian trixie/main armhf nlohmann-json3-dev all 3.11.3-1 [261 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf pandoc-data all 3.1.3-3 [446 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf pandoc armhf 3.1.3+ds-3+b1 [28.5 MB] -Fetched 90.1 MB in 15s (5841 kB/s) +Fetched 90.1 MB in 1s (95.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) @@ -835,8 +867,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Oct 11 14:23:34 UTC 2024. -Universal Time is now: Fri Oct 11 14:23:34 UTC 2024. +Local time is now: Fri Oct 11 15:02:00 UTC 2024. +Universal Time is now: Fri Oct 11 15:02:00 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:armhf (1.83.0-3.2) ... @@ -971,7 +1003,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bali-phy-3.6.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bali-phy_3.6.1+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/19772/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/19772/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bali-phy-3.6.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bali-phy_3.6.1+dfsg-3_source.changes dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.6.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -1009,7 +1045,7 @@ C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-3) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.43.1 Host machine cpu family: arm -Host machine cpu: arm +Host machine cpu: armv7l Has header "sys/resource.h" : YES Has header "fenv.h" : YES Checking for function "log2" : YES @@ -1077,35 +1113,37 @@ Found ninja-1.12.1 at /usr/bin/ninja make[1]: Leaving directory '/build/reproducible-path/bali-phy-3.6.1+dfsg' dh_auto_build -O--buildsystem=meson - cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j3 -v + cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v [1/297] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h 3.6.1 /build/reproducible-path/bali-phy-3.6.1+dfsg/src @git_message@ '(.*)' git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [2/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_pred.cc.o -MF src/util/libutil.a.p/string_pred.cc.o.d -o src/util/libutil.a.p/string_pred.cc.o -c ../src/util/string/pred.cc -[3/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_strip.cc.o -MF src/util/libutil.a.p/string_strip.cc.o.d -o src/util/libutil.a.p/string_strip.cc.o -c ../src/util/string/strip.cc -[4/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/log-level.cc.o -MF src/util/libutil.a.p/log-level.cc.o.d -o src/util/libutil.a.p/log-level.cc.o -c ../src/util/log-level.cc +[3/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/log-level.cc.o -MF src/util/libutil.a.p/log-level.cc.o.d -o src/util/libutil.a.p/log-level.cc.o -c ../src/util/log-level.cc +[4/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_strip.cc.o -MF src/util/libutil.a.p/string_strip.cc.o.d -o src/util/libutil.a.p/string_strip.cc.o -c ../src/util/string/strip.cc [5/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_sanitize.cc.o -MF src/util/libutil.a.p/string_sanitize.cc.o.d -o src/util/libutil.a.p/string_sanitize.cc.o -c ../src/util/string/sanitize.cc -[6/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/io.cc.o -MF src/util/libutil.a.p/io.cc.o.d -o src/util/libutil.a.p/io.cc.o -c ../src/util/io.cc +[6/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/range.cc.o -MF src/util/libutil.a.p/range.cc.o.d -o src/util/libutil.a.p/range.cc.o -c ../src/util/range.cc +[7/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/demangle.cc.o -MF src/util/libutil.a.p/demangle.cc.o.d -o src/util/libutil.a.p/demangle.cc.o -c ../src/util/demangle.cc +[8/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/mapping.cc.o -MF src/util/libutil.a.p/mapping.cc.o.d -o src/util/libutil.a.p/mapping.cc.o -c ../src/util/mapping.cc +[9/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/io.cc.o -MF src/util/libutil.a.p/io.cc.o.d -o src/util/libutil.a.p/io.cc.o -c ../src/util/io.cc ../src/util/io.cc: In function ‘std::vector > load_lines(std::istream&, int, int, int)’: ../src/util/io.cc:113:21: warning: redundant move in return statement [-Wredundant-move] 113 | return std::move(lines); | ~~~~~~~~~^~~~~~~ ../src/util/io.cc:113:21: note: remove ‘std::move’ call -[7/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/range.cc.o -MF src/util/libutil.a.p/range.cc.o.d -o src/util/libutil.a.p/range.cc.o -c ../src/util/range.cc -[8/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/demangle.cc.o -MF src/util/libutil.a.p/demangle.cc.o.d -o src/util/libutil.a.p/demangle.cc.o -c ../src/util/demangle.cc -[9/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/mapping.cc.o -MF src/util/libutil.a.p/mapping.cc.o.d -o src/util/libutil.a.p/mapping.cc.o -c ../src/util/mapping.cc -[10/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/graph.cc.o -MF src/util/libutil.a.p/graph.cc.o.d -o src/util/libutil.a.p/graph.cc.o -c ../src/util/graph.cc -[11/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/rng.cc.o -MF src/util/libutil.a.p/rng.cc.o.d -o src/util/libutil.a.p/rng.cc.o -c ../src/util/rng.cc +[10/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/rng.cc.o -MF src/util/libutil.a.p/rng.cc.o.d -o src/util/libutil.a.p/rng.cc.o -c ../src/util/rng.cc ../src/util/rng.cc: In function ‘long unsigned int get_random_seed()’: ../src/util/rng.cc:42:15: warning: left shift count >= width of type [-Wshift-count-overflow] 42 | s <<= bits_per_read; | ~~^~~~~~~~~~~~~~~~~ -[12/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_split.cc.o -MF src/util/libutil.a.p/string_split.cc.o.d -o src/util/libutil.a.p/string_split.cc.o -c ../src/util/string/split.cc -[13/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/permute.cc.o -MF src/util/libutil.a.p/permute.cc.o.d -o src/util/libutil.a.p/permute.cc.o -c ../src/util/permute.cc -[14/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/cmdline.cc.o -MF src/util/libutil.a.p/cmdline.cc.o.d -o src/util/libutil.a.p/cmdline.cc.o -c ../src/util/cmdline.cc -[15/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-paths.cc.o -MF src/util/libutil.a.p/file-paths.cc.o.d -o src/util/libutil.a.p/file-paths.cc.o -c ../src/util/file-paths.cc +[11/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/graph.cc.o -MF src/util/libutil.a.p/graph.cc.o.d -o src/util/libutil.a.p/graph.cc.o -c ../src/util/graph.cc +[12/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/permute.cc.o -MF src/util/libutil.a.p/permute.cc.o.d -o src/util/libutil.a.p/permute.cc.o -c ../src/util/permute.cc +[13/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/cmdline.cc.o -MF src/util/libutil.a.p/cmdline.cc.o.d -o src/util/libutil.a.p/cmdline.cc.o -c ../src/util/cmdline.cc +[14/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-paths.cc.o -MF src/util/libutil.a.p/file-paths.cc.o.d -o src/util/libutil.a.p/file-paths.cc.o -c ../src/util/file-paths.cc +[15/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/string_split.cc.o -MF src/util/libutil.a.p/string_split.cc.o.d -o src/util/libutil.a.p/string_split.cc.o -c ../src/util/string/split.cc [16/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/myexception.cc.o -MF 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-Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/text.cc.o -MF src/util/libutil.a.p/text.cc.o.d -o src/util/libutil.a.p/text.cc.o -c ../src/util/text.cc +[19/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_newick-tokenizer.cc.o -MF src/libcommon.a.p/tree_newick-tokenizer.cc.o.d -o src/libcommon.a.p/tree_newick-tokenizer.cc.o -c ../src/tree/newick-tokenizer.cc +[20/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-readers.cc.o -MF src/util/libutil.a.p/file-readers.cc.o.d -o src/util/libutil.a.p/file-readers.cc.o -c ../src/util/file-readers.cc +[21/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/ptree.cc.o -MF src/util/libutil.a.p/ptree.cc.o.d -o src/util/libutil.a.p/ptree.cc.o -c ../src/util/ptree.cc In file included from /usr/include/c++/14/set:62, from ../src/util/include/util/ptree.H:6, from ../src/util/ptree.cc:1: @@ -1127,25 +1165,22 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 641 | std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[20/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_newick-tokenizer.cc.o -MF src/libcommon.a.p/tree_newick-tokenizer.cc.o.d -o src/libcommon.a.p/tree_newick-tokenizer.cc.o -c ../src/tree/newick-tokenizer.cc -[21/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-readers.cc.o -MF src/util/libutil.a.p/file-readers.cc.o.d -o src/util/libutil.a.p/file-readers.cc.o -c ../src/util/file-readers.cc -[22/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_sequencetree.cc.o -MF src/libcommon.a.p/tree_sequencetree.cc.o.d -o src/libcommon.a.p/tree_sequencetree.cc.o -c ../src/tree/sequencetree.cc -[23/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree-util.cc.o -MF src/libcommon.a.p/tree_tree-util.cc.o.d -o src/libcommon.a.p/tree_tree-util.cc.o -c ../src/tree/tree-util.cc -[24/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_n_indels.cc.o -MF src/libcommon.a.p/tree-align_n_indels.cc.o.d -o src/libcommon.a.p/tree-align_n_indels.cc.o -c ../src/tree-align/n_indels.cc -[25/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_randomtree.cc.o -MF src/libcommon.a.p/tree_randomtree.cc.o.d -o src/libcommon.a.p/tree_randomtree.cc.o -c ../src/tree/randomtree.cc -[26/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree.cc.o 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-I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment.cc.o -MF src/libcommon.a.p/alignment_alignment.cc.o.d -o src/libcommon.a.p/alignment_alignment.cc.o -c ../src/alignment/alignment.cc [36/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include 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-Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_index-matrix.cc.o -MF src/libcommon.a.p/alignment_index-matrix.cc.o.d -o src/libcommon.a.p/alignment_index-matrix.cc.o -c ../src/alignment/index-matrix.cc -[38/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_statistics.cc.o -MF src/libcommon.a.p/tools_statistics.cc.o.d -o src/libcommon.a.p/tools_statistics.cc.o -c ../src/tools/statistics.cc +[37/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_statistics.cc.o -MF src/libcommon.a.p/tools_statistics.cc.o.d -o src/libcommon.a.p/tools_statistics.cc.o -c ../src/tools/statistics.cc ../src/tools/statistics.cc: In function ‘std::pair statistics::central_confidence_interval(const std::valarray&, double)’: ../src/tools/statistics.cc:132:90: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 132 | pair central_confidence_interval(const valarray& values,double P) @@ -1302,12 +1337,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ +[38/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_index-matrix.cc.o -MF src/libcommon.a.p/alignment_index-matrix.cc.o.d -o src/libcommon.a.p/alignment_index-matrix.cc.o -c ../src/alignment/index-matrix.cc [39/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_parsimony.cc.o -MF src/libcommon.a.p/tools_parsimony.cc.o.d -o src/libcommon.a.p/tools_parsimony.cc.o -c ../src/tools/parsimony.cc [40/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_partition.cc.o -MF src/libcommon.a.p/tools_partition.cc.o.d -o src/libcommon.a.p/tools_partition.cc.o -c ../src/tools/partition.cc [41/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_tree-dist.cc.o -MF src/libcommon.a.p/tools_tree-dist.cc.o.d -o src/libcommon.a.p/tools_tree-dist.cc.o -c ../src/tools/tree-dist.cc -[42/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_findroot.cc.o -MF src/libcommon.a.p/tools_findroot.cc.o.d -o src/libcommon.a.p/tools_findroot.cc.o -c ../src/tools/findroot.cc -[43/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_mctree.cc.o -MF src/libcommon.a.p/tools_mctree.cc.o.d -o src/libcommon.a.p/tools_mctree.cc.o -c ../src/tools/mctree.cc -[44/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_optimize.cc.o -MF src/libcommon.a.p/tools_optimize.cc.o.d -o src/libcommon.a.p/tools_optimize.cc.o -c ../src/tools/optimize.cc +[42/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_optimize.cc.o -MF src/libcommon.a.p/tools_optimize.cc.o.d -o src/libcommon.a.p/tools_optimize.cc.o -c ../src/tools/optimize.cc +[43/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_findroot.cc.o -MF src/libcommon.a.p/tools_findroot.cc.o.d -o src/libcommon.a.p/tools_findroot.cc.o -c ../src/tools/findroot.cc +[44/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_mctree.cc.o -MF src/libcommon.a.p/tools_mctree.cc.o.d -o src/libcommon.a.p/tools_mctree.cc.o -c ../src/tools/mctree.cc [45/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-report.cc.o -MF src/libcommon.a.p/tools_distance-report.cc.o.d -o src/libcommon.a.p/tools_distance-report.cc.o -c ../src/tools/distance-report.cc ../src/tools/distance-report.cc: In function ‘void report_distances(const std::valarray&, const std::string&, boost::program_options::variables_map&)’: ../src/tools/distance-report.cc:35:75: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -1359,17 +1395,19 @@ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [48/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_distance-methods.cc.o -MF src/libcommon.a.p/tools_distance-methods.cc.o.d -o src/libcommon.a.p/tools_distance-methods.cc.o -c ../src/tools/distance-methods.cc -[49/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_joint-A-T.cc.o -MF src/libcommon.a.p/tools_joint-A-T.cc.o.d -o src/libcommon.a.p/tools_joint-A-T.cc.o -c ../src/tools/joint-A-T.cc -[50/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/object.cc.o -MF src/computation/libcomputation.a.p/object.cc.o.d -o src/computation/libcomputation.a.p/object.cc.o -c ../src/computation/object.cc -[51/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_consensus-tree.cc.o -MF src/libcommon.a.p/tools_consensus-tree.cc.o.d -o src/libcommon.a.p/tools_consensus-tree.cc.o -c ../src/tools/consensus-tree.cc -[52/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/closure.cc.o -MF src/computation/libcomputation.a.p/closure.cc.o.d -o src/computation/libcomputation.a.p/closure.cc.o -c ../src/computation/closure.cc +[49/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/object.cc.o -MF src/computation/libcomputation.a.p/object.cc.o.d -o src/computation/libcomputation.a.p/object.cc.o -c ../src/computation/object.cc +[50/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_joint-A-T.cc.o -MF src/libcommon.a.p/tools_joint-A-T.cc.o.d -o src/libcommon.a.p/tools_joint-A-T.cc.o -c ../src/tools/joint-A-T.cc +[51/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/closure.cc.o -MF src/computation/libcomputation.a.p/closure.cc.o.d -o src/computation/libcomputation.a.p/closure.cc.o -c ../src/computation/closure.cc +[52/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tools_consensus-tree.cc.o -MF src/libcommon.a.p/tools_consensus-tree.cc.o.d -o src/libcommon.a.p/tools_consensus-tree.cc.o -c ../src/tools/consensus-tree.cc [53/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/preprocess.cc.o -MF src/computation/libcomputation.a.p/preprocess.cc.o.d -o src/computation/libcomputation.a.p/preprocess.cc.o -c ../src/computation/preprocess.cc [54/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/program.cc.o -MF src/computation/libcomputation.a.p/program.cc.o.d -o src/computation/libcomputation.a.p/program.cc.o -c ../src/computation/program.cc ../src/computation/program.cc: In member function ‘void Program::check_dependencies()’: ../src/computation/program.cc:155:17: warning: unused variable ‘index’ [-Wunused-variable] 155 | int index = find_module(name); | ^~~~~ -[55/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/module.cc.o -MF src/computation/libcomputation.a.p/module.cc.o.d -o src/computation/libcomputation.a.p/module.cc.o -c ../src/computation/module.cc +[55/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/context.cc.o -MF src/computation/libcomputation.a.p/context.cc.o.d -o src/computation/libcomputation.a.p/context.cc.o -c ../src/computation/context.cc +[56/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/operations.cc.o -MF src/computation/libcomputation.a.p/operations.cc.o.d -o src/computation/libcomputation.a.p/operations.cc.o -c ../src/computation/operations.cc +[57/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/module.cc.o -MF src/computation/libcomputation.a.p/module.cc.o.d -o src/computation/libcomputation.a.p/module.cc.o -c ../src/computation/module.cc In file included from /usr/include/c++/14/set:62, from ../src/computation/module.cc:1: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, symbol_info>; _KeyOfValue = std::_Select1st, symbol_info> >; _Compare = std::less >; _Alloc = std::allocator, symbol_info> >]’: @@ -1395,11 +1433,10 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[56/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/context.cc.o -MF src/computation/libcomputation.a.p/context.cc.o.d -o src/computation/libcomputation.a.p/context.cc.o -c ../src/computation/context.cc -[57/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/loader.cc.o -MF src/computation/libcomputation.a.p/loader.cc.o.d -o src/computation/libcomputation.a.p/loader.cc.o -c ../src/computation/loader.cc -[58/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/operations.cc.o -MF src/computation/libcomputation.a.p/operations.cc.o.d -o src/computation/libcomputation.a.p/operations.cc.o -c ../src/computation/operations.cc +[58/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/loader.cc.o -MF src/computation/libcomputation.a.p/loader.cc.o.d -o src/computation/libcomputation.a.p/loader.cc.o -c ../src/computation/loader.cc [59/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/param.cc.o -MF src/computation/libcomputation.a.p/param.cc.o.d -o src/computation/libcomputation.a.p/param.cc.o -c ../src/computation/param.cc -[60/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar.cc.o -MF src/computation/libcomputation.a.p/parser_desugar.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar.cc.o -c ../src/computation/parser/desugar.cc +[60/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_driver.cc.o -MF src/computation/libcomputation.a.p/parser_driver.cc.o.d -o src/computation/libcomputation.a.p/parser_driver.cc.o -c ../src/computation/parser/driver.cc +[61/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar.cc.o -MF src/computation/libcomputation.a.p/parser_desugar.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar.cc.o -c ../src/computation/parser/desugar.cc In file included from /usr/include/c++/14/vector:72, from ../src/computation/module.H:7, from ../src/computation/parser/desugar.cc:1: @@ -1426,8 +1463,36 @@ ../src/computation/parser/desugar.cc:438:35: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 438 | return case_expression(v[0],{true},{failable_expression(v[1])}).result(v[2]); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[61/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_driver.cc.o -MF src/computation/libcomputation.a.p/parser_driver.cc.o.d -o src/computation/libcomputation.a.p/parser_driver.cc.o -c ../src/computation/parser/driver.cc -[62/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar-case.cc.o -MF src/computation/libcomputation.a.p/parser_desugar-case.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar-case.cc.o -c ../src/computation/parser/desugar-case.cc +[62/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_lexer.cc.o -MF src/computation/libcomputation.a.p/parser_lexer.cc.o.d -o src/computation/libcomputation.a.p/parser_lexer.cc.o -c ../src/computation/parser/lexer.cc +[63/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_rename.cc.o -MF src/computation/libcomputation.a.p/parser_rename.cc.o.d -o src/computation/libcomputation.a.p/parser_rename.cc.o -c ../src/computation/parser/rename.cc +In file included from /usr/include/c++/14/vector:66, + from ../src/computation/parser/rename.cc:2: +/usr/include/c++/14/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator]’: +/usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 + 678 | vector(initializer_list __l, + | ^~~~~~ +../src/computation/parser/rename.cc: In member function ‘bound_var_info renamer_state::rename_decls(expression_ref&, const bound_var_info&)’: +../src/computation/parser/rename.cc:715:69: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 + 715 | decl = expression_ref(AST_node("Decl:sigtype"),{id,type}); + | ^ +../src/computation/parser/rename.cc:732:78: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 + 732 | cdecl = expression_ref(AST_node("Decl:sigtype"),{id,type}); + | ^ +../src/computation/parser/rename.cc:751:89: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 + 751 | decl = expression_ref(AST_node("Instance"),{instance_header, instance_decls}); + | ^ +../src/computation/parser/rename.cc:781:89: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 + 781 | decl = expression_ref(AST_node("Instance"),{instance_header, instance_decls}); + | ^ +In file included from /usr/include/c++/14/deque:69, + from ../src/computation/parser/rename.cc:5: +/usr/include/c++/14/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(iterator, _ForwardIterator, _ForwardIterator, size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = expression_ref; _Alloc = std::allocator]’: +/usr/include/c++/14/bits/deque.tcc:771:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 771 | deque<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/deque.tcc:771:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +[64/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_operator.cc.o -MF src/computation/libcomputation.a.p/expression_operator.cc.o.d -o src/computation/libcomputation.a.p/expression_operator.cc.o -c ../src/computation/expression/operator.cc +[65/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar-case.cc.o -MF src/computation/libcomputation.a.p/parser_desugar-case.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar-case.cc.o -c ../src/computation/parser/desugar-case.cc In file included from /usr/include/c++/14/vector:65, from ../src/computation/module.H:7, from ../src/computation/parser/desugar-case.cc:1: @@ -1565,40 +1630,47 @@ 1489 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -[63/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_rename.cc.o -MF src/computation/libcomputation.a.p/parser_rename.cc.o.d -o src/computation/libcomputation.a.p/parser_rename.cc.o -c ../src/computation/parser/rename.cc -In file included from /usr/include/c++/14/vector:66, - from ../src/computation/parser/rename.cc:2: -/usr/include/c++/14/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator]’: -/usr/include/c++/14/bits/stl_vector.h:678:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 - 678 | vector(initializer_list __l, - | ^~~~~~ -../src/computation/parser/rename.cc: In member function ‘bound_var_info renamer_state::rename_decls(expression_ref&, const bound_var_info&)’: -../src/computation/parser/rename.cc:715:69: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 - 715 | decl = expression_ref(AST_node("Decl:sigtype"),{id,type}); - | ^ -../src/computation/parser/rename.cc:732:78: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 - 732 | cdecl = expression_ref(AST_node("Decl:sigtype"),{id,type}); - | ^ -../src/computation/parser/rename.cc:751:89: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 - 751 | decl = expression_ref(AST_node("Instance"),{instance_header, instance_decls}); - | ^ -../src/computation/parser/rename.cc:781:89: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 - 781 | decl = expression_ref(AST_node("Instance"),{instance_header, instance_decls}); - | ^ -In file included from /usr/include/c++/14/deque:69, - from ../src/computation/parser/rename.cc:5: -/usr/include/c++/14/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(iterator, _ForwardIterator, _ForwardIterator, size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = expression_ref; _Alloc = std::allocator]’: -/usr/include/c++/14/bits/deque.tcc:771:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 771 | deque<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/deque.tcc:771:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -[64/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_operator.cc.o -MF src/computation/libcomputation.a.p/expression_operator.cc.o.d -o src/computation/libcomputation.a.p/expression_operator.cc.o -c ../src/computation/expression/operator.cc -[65/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_lexer.cc.o -MF src/computation/libcomputation.a.p/parser_lexer.cc.o.d -o src/computation/libcomputation.a.p/parser_lexer.cc.o -c ../src/computation/parser/lexer.cc -[66/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression.cc.o -MF src/computation/libcomputation.a.p/expression_expression.cc.o.d -o src/computation/libcomputation.a.p/expression_expression.cc.o -c ../src/computation/expression/expression.cc -[67/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_constructor.cc.o -MF src/computation/libcomputation.a.p/expression_constructor.cc.o.d -o src/computation/libcomputation.a.p/expression_constructor.cc.o -c ../src/computation/expression/constructor.cc +[66/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_constructor.cc.o -MF src/computation/libcomputation.a.p/expression_constructor.cc.o.d -o src/computation/libcomputation.a.p/expression_constructor.cc.o -c ../src/computation/expression/constructor.cc +[67/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression.cc.o -MF src/computation/libcomputation.a.p/expression_expression.cc.o.d -o src/computation/libcomputation.a.p/expression_expression.cc.o -c ../src/computation/expression/expression.cc [68/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_AST_node.cc.o -MF src/computation/libcomputation.a.p/expression_AST_node.cc.o.d -o src/computation/libcomputation.a.p/expression_AST_node.cc.o -c ../src/computation/expression/AST_node.cc [69/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_apply.cc.o -MF src/computation/libcomputation.a.p/expression_apply.cc.o.d -o src/computation/libcomputation.a.p/expression_apply.cc.o -c ../src/computation/expression/apply.cc -[70/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_parser.cc.o -MF src/computation/libcomputation.a.p/parser_parser.cc.o.d -o src/computation/libcomputation.a.p/parser_parser.cc.o -c ../src/computation/parser/parser.cc +[70/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_substitute.cc.o -MF src/computation/libcomputation.a.p/expression_substitute.cc.o.d -o src/computation/libcomputation.a.p/expression_substitute.cc.o -c ../src/computation/expression/substitute.cc +[71/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression_ref.cc.o -MF src/computation/libcomputation.a.p/expression_expression_ref.cc.o.d -o src/computation/libcomputation.a.p/expression_expression_ref.cc.o -c ../src/computation/expression/expression_ref.cc +In file included from /usr/include/c++/14/vector:65, + from ../src/computation/expression/expression_ref.H:4, + from ../src/computation/expression/expression_ref.cc:4: +/usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*]’: +/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*; bool _TrivialValueTypes = false]’, + inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, + inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*; _Tp = expression_ref]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, + inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = expression_ref; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/stl_vector.h:606:31, + inlined from ‘expression::expression(const expression&)’ at ../src/computation/expression/expression_ref.H:325:8, + inlined from ‘virtual std::string expression::print() const’ at ../src/computation/expression/expression_ref.cc:155:48: +/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 137 | { return std::__do_uninit_copy(__first, __last, __result); } + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*; bool _TrivialValueTypes = false]’, + inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, + inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*; _Tp = expression_ref]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, + inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = expression_ref; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/stl_vector.h:1624:35, + inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = expression_ref; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/vector.tcc:238:44, + inlined from ‘std::unique_ptr operator+(const expression_ref&, const expression_ref&)’ at ../src/computation/expression/expression_ref.cc:372:19: +/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 137 | { return std::__do_uninit_copy(__first, __last, __result); } + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list)’: +../src/computation/expression/expression_ref.cc:331:1: note: parameter passing for argument of type ‘const std::initializer_list’ changed in GCC 7.1 + 331 | expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S) + | ^~~~~~~~~~ +../src/computation/expression/expression_ref.cc: In constructor ‘EPtree::EPtree(const expression_ref&, std::initializer_list, expression_ref> >)’: +../src/computation/expression/expression_ref.cc:544:1: note: parameter passing for argument of type ‘const std::initializer_list, expression_ref> >’ changed in GCC 7.1 + 544 | EPtree::EPtree(const expression_ref& H, const std::initializer_list< std::pair > S) + | ^~~~~~ +[72/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_parser.cc.o -MF src/computation/libcomputation.a.p/parser_parser.cc.o.d -o src/computation/libcomputation.a.p/parser_parser.cc.o -c ../src/computation/parser/parser.cc In file included from /usr/include/c++/14/vector:65, from parser.y:14, from ../src/computation/parser/parser.cc:41: @@ -1643,61 +1715,26 @@ parser.y:1113:202: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1114:200: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1115:247: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 -[71/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_expression_ref.cc.o -MF src/computation/libcomputation.a.p/expression_expression_ref.cc.o.d -o src/computation/libcomputation.a.p/expression_expression_ref.cc.o -c ../src/computation/expression/expression_ref.cc -In file included from /usr/include/c++/14/vector:65, - from ../src/computation/expression/expression_ref.H:4, - from ../src/computation/expression/expression_ref.cc:4: -/usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*]’: -/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*; bool _TrivialValueTypes = false]’, - inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, - inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*; _Tp = expression_ref]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, - inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = expression_ref; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/stl_vector.h:606:31, - inlined from ‘expression::expression(const expression&)’ at ../src/computation/expression/expression_ref.H:325:8, - inlined from ‘virtual std::string expression::print() const’ at ../src/computation/expression/expression_ref.cc:155:48: -/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 137 | { return std::__do_uninit_copy(__first, __last, __result); } - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*; bool _TrivialValueTypes = false]’, - inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, - inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = expression_ref*; _Tp = expression_ref]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, - inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = expression_ref; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/stl_vector.h:1624:35, - inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = expression_ref; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/vector.tcc:238:44, - inlined from ‘std::unique_ptr operator+(const expression_ref&, const expression_ref&)’ at ../src/computation/expression/expression_ref.cc:372:19: -/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 137 | { return std::__do_uninit_copy(__first, __last, __result); } - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list)’: -../src/computation/expression/expression_ref.cc:331:1: note: parameter passing for argument of type ‘const std::initializer_list’ changed in GCC 7.1 - 331 | expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S) - | ^~~~~~~~~~ -../src/computation/expression/expression_ref.cc: In constructor ‘EPtree::EPtree(const expression_ref&, std::initializer_list, expression_ref> >)’: -../src/computation/expression/expression_ref.cc:544:1: note: parameter passing for argument of type ‘const std::initializer_list, expression_ref> >’ changed in GCC 7.1 - 544 | EPtree::EPtree(const expression_ref& H, const std::initializer_list< std::pair > S) - | ^~~~~~ -[72/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_substitute.cc.o -MF src/computation/libcomputation.a.p/expression_substitute.cc.o.d -o src/computation/libcomputation.a.p/expression_substitute.cc.o -c ../src/computation/expression/substitute.cc [73/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_indexify.cc.o -MF src/computation/libcomputation.a.p/expression_indexify.cc.o.d -o src/computation/libcomputation.a.p/expression_indexify.cc.o -c ../src/computation/expression/indexify.cc [74/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_case.cc.o -MF src/computation/libcomputation.a.p/expression_case.cc.o.d -o src/computation/libcomputation.a.p/expression_case.cc.o -c ../src/computation/expression/case.cc -[75/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_let.cc.o -MF src/computation/libcomputation.a.p/expression_let.cc.o.d -o src/computation/libcomputation.a.p/expression_let.cc.o -c ../src/computation/expression/let.cc -[76/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_tuple.cc.o -MF src/computation/libcomputation.a.p/expression_tuple.cc.o.d -o src/computation/libcomputation.a.p/expression_tuple.cc.o -c ../src/computation/expression/tuple.cc -[77/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_trim.cc.o -MF src/computation/libcomputation.a.p/expression_trim.cc.o.d -o src/computation/libcomputation.a.p/expression_trim.cc.o -c ../src/computation/expression/trim.cc -[78/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_list.cc.o -MF src/computation/libcomputation.a.p/expression_list.cc.o.d -o src/computation/libcomputation.a.p/expression_list.cc.o -c ../src/computation/expression/list.cc +[75/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_tuple.cc.o -MF src/computation/libcomputation.a.p/expression_tuple.cc.o.d -o src/computation/libcomputation.a.p/expression_tuple.cc.o -c ../src/computation/expression/tuple.cc +[76/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_trim.cc.o -MF src/computation/libcomputation.a.p/expression_trim.cc.o.d -o src/computation/libcomputation.a.p/expression_trim.cc.o -c ../src/computation/expression/trim.cc +[77/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_list.cc.o -MF src/computation/libcomputation.a.p/expression_list.cc.o.d -o src/computation/libcomputation.a.p/expression_list.cc.o -c ../src/computation/expression/list.cc +[78/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_let.cc.o -MF src/computation/libcomputation.a.p/expression_let.cc.o.d -o src/computation/libcomputation.a.p/expression_let.cc.o -c ../src/computation/expression/let.cc [79/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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-std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_tokens.cc.o -MF src/computation/libcomputation.a.p/machine_tokens.cc.o.d -o src/computation/libcomputation.a.p/machine_tokens.cc.o -c ../src/computation/machine/tokens.cc -[89/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_do_block.cc.o -MF src/computation/libcomputation.a.p/expression_do_block.cc.o.d -o src/computation/libcomputation.a.p/expression_do_block.cc.o -c ../src/computation/expression/do_block.cc -[90/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_evaluate.cc.o -MF src/computation/libcomputation.a.p/machine_evaluate.cc.o.d -o src/computation/libcomputation.a.p/machine_evaluate.cc.o -c ../src/computation/machine/evaluate.cc -[91/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_show_graph.cc.o -MF src/computation/libcomputation.a.p/machine_show_graph.cc.o.d -o src/computation/libcomputation.a.p/machine_show_graph.cc.o -c ../src/computation/machine/show_graph.cc +[88/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_do_block.cc.o -MF src/computation/libcomputation.a.p/expression_do_block.cc.o.d -o src/computation/libcomputation.a.p/expression_do_block.cc.o -c ../src/computation/expression/do_block.cc +[89/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_tokens.cc.o -MF src/computation/libcomputation.a.p/machine_tokens.cc.o.d -o src/computation/libcomputation.a.p/machine_tokens.cc.o -c ../src/computation/machine/tokens.cc +[90/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_sums.cc.o -MF src/computation/libcomputation.a.p/machine_sums.cc.o.d -o src/computation/libcomputation.a.p/machine_sums.cc.o -c ../src/computation/machine/sums.cc +[91/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_evaluate.cc.o -MF src/computation/libcomputation.a.p/machine_evaluate.cc.o.d -o src/computation/libcomputation.a.p/machine_evaluate.cc.o -c ../src/computation/machine/evaluate.cc +[92/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_show_graph.cc.o -MF src/computation/libcomputation.a.p/machine_show_graph.cc.o.d -o src/computation/libcomputation.a.p/machine_show_graph.cc.o -c ../src/computation/machine/show_graph.cc In file included from /usr/include/c++/14/set:62, from ../src/computation/program.H:4, from ../src/computation/machine/graph_register.H:12, @@ -1753,9 +1790,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[92/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_sums.cc.o -MF src/computation/libcomputation.a.p/machine_sums.cc.o.d -o src/computation/libcomputation.a.p/machine_sums.cc.o -c ../src/computation/machine/sums.cc -[93/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_graph_register.cc.o -MF src/computation/libcomputation.a.p/machine_graph_register.cc.o.d -o src/computation/libcomputation.a.p/machine_graph_register.cc.o -c ../src/computation/machine/graph_register.cc -[94/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_gc.cc.o -MF src/computation/libcomputation.a.p/machine_gc.cc.o.d -o src/computation/libcomputation.a.p/machine_gc.cc.o -c ../src/computation/machine/gc.cc +[93/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_gc.cc.o -MF src/computation/libcomputation.a.p/machine_gc.cc.o.d -o src/computation/libcomputation.a.p/machine_gc.cc.o -c ../src/computation/machine/gc.cc +[94/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_graph_register.cc.o -MF src/computation/libcomputation.a.p/machine_graph_register.cc.o.d -o src/computation/libcomputation.a.p/machine_graph_register.cc.o -c ../src/computation/machine/graph_register.cc [95/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_reroot.cc.o -MF src/computation/libcomputation.a.p/machine_reroot.cc.o.d -o src/computation/libcomputation.a.p/machine_reroot.cc.o -c ../src/computation/machine/reroot.cc [96/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/expression_kind.cc.o -MF src/computation/libcomputation.a.p/expression_kind.cc.o.d -o src/computation/libcomputation.a.p/expression_kind.cc.o -c ../src/computation/expression/kind.cc [97/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/machine_effects.cc.o -MF src/computation/libcomputation.a.p/machine_effects.cc.o.d -o src/computation/libcomputation.a.p/machine_effects.cc.o -c ../src/computation/machine/effects.cc @@ -3067,28 +3103,29 @@ 27 | return ::operator new(size); | ~~~~~~~~~~~~~~^~~~~~ [102/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra 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-Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_5way.cc.o -MF src/libbaliphy.a.p/dp_5way.cc.o.d -o src/libbaliphy.a.p/dp_5way.cc.o -c ../src/dp/5way.cc [113/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_alignment-sums.cc.o -MF src/libbaliphy.a.p/dp_alignment-sums.cc.o.d -o src/libbaliphy.a.p/dp_alignment-sums.cc.o -c ../src/dp/alignment-sums.cc -[114/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_mcmc.cc.o -MF src/libbaliphy.a.p/mcmc_mcmc.cc.o.d -o src/libbaliphy.a.p/mcmc_mcmc.cc.o -c ../src/mcmc/mcmc.cc -[115/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -MF src/libbaliphy.a.p/mcmc_slice-sampling.cc.o.d -o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -c ../src/mcmc/slice-sampling.cc +[114/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_AIS.cc.o -MF src/libbaliphy.a.p/mcmc_AIS.cc.o.d -o src/libbaliphy.a.p/mcmc_AIS.cc.o -c ../src/mcmc/AIS.cc +[115/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_mcmc.cc.o -MF src/libbaliphy.a.p/mcmc_mcmc.cc.o.d -o src/libbaliphy.a.p/mcmc_mcmc.cc.o -c ../src/mcmc/mcmc.cc +[116/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -MF src/libbaliphy.a.p/mcmc_slice-sampling.cc.o.d -o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o -c ../src/mcmc/slice-sampling.cc ../src/mcmc/slice-sampling.cc: In function ‘std::pair find_slice_boundaries_stepping_out(double, slice_function&, double, double, int)’: ../src/mcmc/slice-sampling.cc:373:91: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 373 | find_slice_boundaries_stepping_out(double x0,slice_function& g,double logy, double w,int m) | ^ -[116/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_proposals.cc.o -MF src/libbaliphy.a.p/mcmc_proposals.cc.o.d -o src/libbaliphy.a.p/mcmc_proposals.cc.o -c ../src/mcmc/proposals.cc -[117/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_AIS.cc.o -MF src/libbaliphy.a.p/mcmc_AIS.cc.o.d -o src/libbaliphy.a.p/mcmc_AIS.cc.o -c ../src/mcmc/AIS.cc -[118/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_moves.cc.o -MF src/libbaliphy.a.p/mcmc_moves.cc.o.d -o src/libbaliphy.a.p/mcmc_moves.cc.o -c ../src/mcmc/moves.cc -[119/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -MF src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -c ../src/mcmc/sample-branch-lengths.cc -[120/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_logger.cc.o -MF src/libbaliphy.a.p/mcmc_logger.cc.o.d -o src/libbaliphy.a.p/mcmc_logger.cc.o -c ../src/mcmc/logger.cc +[117/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_proposals.cc.o -MF src/libbaliphy.a.p/mcmc_proposals.cc.o.d -o src/libbaliphy.a.p/mcmc_proposals.cc.o -c ../src/mcmc/proposals.cc +[118/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -MF src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o -c ../src/mcmc/sample-branch-lengths.cc +[119/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_moves.cc.o -MF src/libbaliphy.a.p/mcmc_moves.cc.o.d -o src/libbaliphy.a.p/mcmc_moves.cc.o -c ../src/mcmc/moves.cc +[120/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -MF src/libbaliphy.a.p/mcmc_sample-alignment.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -c ../src/mcmc/sample-alignment.cc +[121/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_logger.cc.o -MF src/libbaliphy.a.p/mcmc_logger.cc.o.d -o src/libbaliphy.a.p/mcmc_logger.cc.o -c ../src/mcmc/logger.cc In file included from /usr/include/range/v3/view/split_when.hpp:36, from /usr/include/range/v3/action/split_when.hpp:31, from /usr/include/range/v3/action.hpp:33, @@ -3132,10 +3169,10 @@ /usr/include/c++/14/bits/stl_algobase.h:401:53: note: within this loop 401 | for(_Distance __n = __last - __first; __n > 0; --__n) | ~~~~^~~ -[121/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -MF src/libbaliphy.a.p/mcmc_sample-alignment.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o -c ../src/mcmc/sample-alignment.cc [122/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o -MF src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o -c ../src/mcmc/sample-two-nodes.cc [123/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o -c ../src/mcmc/sample-topology-NNI.cc -[124/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -c ../src/mcmc/sample-topology-SPR.cc +[124/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-node.cc.o -MF src/libbaliphy.a.p/mcmc_sample-node.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-node.cc.o -c ../src/mcmc/sample-node.cc +[125/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -MF src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o -c ../src/mcmc/sample-topology-SPR.cc In file included from /usr/include/c++/14/map:62, from ../src/models/model.H:31, from ../src/models/parameters.H:43, @@ -3182,18 +3219,18 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[125/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-cube.cc.o -MF src/libbaliphy.a.p/mcmc_sample-cube.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-cube.cc.o -c ../src/mcmc/sample-cube.cc -[126/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-node.cc.o -MF src/libbaliphy.a.p/mcmc_sample-node.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-node.cc.o -c ../src/mcmc/sample-node.cc +[126/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-cube.cc.o -MF src/libbaliphy.a.p/mcmc_sample-cube.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-cube.cc.o -c ../src/mcmc/sample-cube.cc [127/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_sample-tri.cc.o -MF src/libbaliphy.a.p/mcmc_sample-tri.cc.o.d -o src/libbaliphy.a.p/mcmc_sample-tri.cc.o -c ../src/mcmc/sample-tri.cc -[128/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_substitution.cc.o -MF src/libbaliphy.a.p/substitution_substitution.cc.o.d -o src/libbaliphy.a.p/substitution_substitution.cc.o -c ../src/substitution/substitution.cc +[128/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_exponential.cc.o -MF src/libbaliphy.a.p/math_exponential.cc.o.d -o src/libbaliphy.a.p/math_exponential.cc.o -c ../src/math/exponential.cc [129/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/mcmc_setup.cc.o -MF src/libbaliphy.a.p/mcmc_setup.cc.o.d -o src/libbaliphy.a.p/mcmc_setup.cc.o -c ../src/mcmc/setup.cc -[130/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_exponential.cc.o -MF src/libbaliphy.a.p/math_exponential.cc.o.d -o src/libbaliphy.a.p/math_exponential.cc.o -c ../src/math/exponential.cc -[131/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_parsimony.cc.o -MF src/libbaliphy.a.p/substitution_parsimony.cc.o.d -o src/libbaliphy.a.p/substitution_parsimony.cc.o -c ../src/substitution/parsimony.cc -[132/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_pow2.cc.o -MF src/libbaliphy.a.p/math_pow2.cc.o.d -o src/libbaliphy.a.p/math_pow2.cc.o -c ../src/math/pow2.cc +[130/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_parsimony.cc.o -MF src/libbaliphy.a.p/substitution_parsimony.cc.o.d -o src/libbaliphy.a.p/substitution_parsimony.cc.o -c ../src/substitution/parsimony.cc +[131/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_pow2.cc.o -MF src/libbaliphy.a.p/math_pow2.cc.o.d -o src/libbaliphy.a.p/math_pow2.cc.o -c ../src/math/pow2.cc +[132/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/substitution_substitution.cc.o -MF src/libbaliphy.a.p/substitution_substitution.cc.o.d -o src/libbaliphy.a.p/substitution_substitution.cc.o -c ../src/substitution/substitution.cc [133/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_site-compression.cc.o -MF src/libbaliphy.a.p/models_site-compression.cc.o.d -o src/libbaliphy.a.p/models_site-compression.cc.o -c ../src/models/site-compression.cc [134/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/math_eigenvalue.cc.o -MF src/libbaliphy.a.p/math_eigenvalue.cc.o.d -o src/libbaliphy.a.p/math_eigenvalue.cc.o -c ../src/math/eigenvalue.cc [135/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_TreeInterface.cc.o -MF src/libbaliphy.a.p/models_TreeInterface.cc.o.d -o src/libbaliphy.a.p/models_TreeInterface.cc.o -c ../src/models/TreeInterface.cc -[136/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_rules.cc.o -MF src/libbaliphy.a.p/models_rules.cc.o.d -o src/libbaliphy.a.p/models_rules.cc.o -c ../src/models/rules.cc +[136/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parse.cc.o -MF src/libbaliphy.a.p/models_parse.cc.o.d -o src/libbaliphy.a.p/models_parse.cc.o -c ../src/models/parse.cc +[137/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_rules.cc.o -MF src/libbaliphy.a.p/models_rules.cc.o.d -o src/libbaliphy.a.p/models_rules.cc.o -c ../src/models/rules.cc In file included from /usr/include/c++/14/set:62, from ../src/models/rules.cc:2: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: @@ -3224,7 +3261,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[137/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parameters.cc.o -MF src/libbaliphy.a.p/models_parameters.cc.o.d -o src/libbaliphy.a.p/models_parameters.cc.o -c ../src/models/parameters.cc [138/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_setup.cc.o -MF src/libbaliphy.a.p/models_setup.cc.o.d -o src/libbaliphy.a.p/models_setup.cc.o -c ../src/models/setup.cc In file included from /usr/include/c++/14/map:62, from /usr/include/boost/program_options/errors.hpp:15, @@ -3275,8 +3311,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[139/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parse.cc.o -MF src/libbaliphy.a.p/models_parse.cc.o.d -o src/libbaliphy.a.p/models_parse.cc.o -c ../src/models/parse.cc -[140/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_typecheck.cc.o -MF src/libbaliphy.a.p/models_typecheck.cc.o.d -o src/libbaliphy.a.p/models_typecheck.cc.o -c ../src/models/typecheck.cc +[139/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_parameters.cc.o -MF src/libbaliphy.a.p/models_parameters.cc.o.d -o src/libbaliphy.a.p/models_parameters.cc.o -c ../src/models/parameters.cc +[140/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_unification.cc.o -MF src/libbaliphy.a.p/models_unification.cc.o.d -o src/libbaliphy.a.p/models_unification.cc.o -c ../src/models/unification.cc +[141/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_typecheck.cc.o -MF src/libbaliphy.a.p/models_typecheck.cc.o.d -o src/libbaliphy.a.p/models_typecheck.cc.o -c ../src/models/typecheck.cc In file included from /usr/include/c++/14/set:62, from ../src/models/unification.H:4, from ../src/models/typecheck.H:7, @@ -3341,12 +3378,13 @@ ../src/models/typecheck.cc:598:63: note: parameter passing for argument of type ‘std::initializer_list, ptree> >’ changed in GCC 7.1 598 | auto model2 = ptree({{"value",model},{"type",result_type}}); | ^ -[141/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_unification.cc.o -MF src/libbaliphy.a.p/models_unification.cc.o.d -o src/libbaliphy.a.p/models_unification.cc.o -c ../src/models/unification.cc -[142/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_choose.cc.o -MF src/libbaliphy.a.p/probability_choose.cc.o.d -o src/libbaliphy.a.p/probability_choose.cc.o -c ../src/probability/choose.cc -[143/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_link2.cc.o -MF src/libbaliphy.a.p/tree-align_link2.cc.o.d -o src/libbaliphy.a.p/tree-align_link2.cc.o -c ../src/tree-align/link2.cc +[142/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_link2.cc.o -MF src/libbaliphy.a.p/tree-align_link2.cc.o.d -o src/libbaliphy.a.p/tree-align_link2.cc.o -c ../src/tree-align/link2.cc +[143/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_choose.cc.o -MF src/libbaliphy.a.p/probability_choose.cc.o.d -o src/libbaliphy.a.p/probability_choose.cc.o -c ../src/probability/choose.cc [144/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/models_model.cc.o -MF src/libbaliphy.a.p/models_model.cc.o.d -o src/libbaliphy.a.p/models_model.cc.o -c ../src/models/model.cc [145/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/imodel_imodel.cc.o -MF src/libbaliphy.a.p/imodel_imodel.cc.o.d -o src/libbaliphy.a.p/imodel_imodel.cc.o -c ../src/imodel/imodel.cc -[146/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_probability.cc.o -MF src/libbaliphy.a.p/probability_probability.cc.o.d -o src/libbaliphy.a.p/probability_probability.cc.o -c ../src/probability/probability.cc +[146/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -MF src/libbaliphy.a.p/alignment_alignment-constraint.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -c ../src/alignment/alignment-constraint.cc +[147/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_n_indels2.cc.o -MF src/libbaliphy.a.p/tree-align_n_indels2.cc.o.d -o src/libbaliphy.a.p/tree-align_n_indels2.cc.o -c ../src/tree-align/n_indels2.cc +[148/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/probability_probability.cc.o -MF src/libbaliphy.a.p/probability_probability.cc.o.d -o src/libbaliphy.a.p/probability_probability.cc.o -c ../src/probability/probability.cc In file included from ../src/probability/probability.cc:22: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of ‘boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = long double; result_type = std::pair]’: /usr/include/boost/math/tools/fraction.hpp:217:20: required from ‘typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double; typename detail::fraction_traits::result_type = long double; uintmax_t = long long unsigned int]’ @@ -3377,12 +3415,10 @@ /usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 299 | result_type operator()() | ^~~~~~~~ -[147/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -MF src/libbaliphy.a.p/alignment_alignment-constraint.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -c ../src/alignment/alignment-constraint.cc -[148/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tree-align_n_indels2.cc.o -MF src/libbaliphy.a.p/tree-align_n_indels2.cc.o.d -o src/libbaliphy.a.p/tree-align_n_indels2.cc.o -c ../src/tree-align/n_indels2.cc -[149/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-util2.cc.o -MF src/libbaliphy.a.p/alignment_alignment-util2.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-util2.cc.o -c ../src/alignment/alignment-util2.cc -[150/297] rm -f src/util/libutil.a && gcc-ar csrDT src/util/libutil.a src/util/libutil.a.p/string_pred.cc.o src/util/libutil.a.p/string_sanitize.cc.o src/util/libutil.a.p/string_strip.cc.o src/util/libutil.a.p/string_split.cc.o src/util/libutil.a.p/log-level.cc.o src/util/libutil.a.p/io.cc.o src/util/libutil.a.p/graph.cc.o src/util/libutil.a.p/range.cc.o src/util/libutil.a.p/demangle.cc.o src/util/libutil.a.p/mapping.cc.o src/util/libutil.a.p/cmdline.cc.o src/util/libutil.a.p/rng.cc.o src/util/libutil.a.p/permute.cc.o src/util/libutil.a.p/file-paths.cc.o src/util/libutil.a.p/ptree.cc.o src/util/libutil.a.p/text.cc.o src/util/libutil.a.p/myexception.cc.o src/util/libutil.a.p/time.cc.o src/util/libutil.a.p/file-readers.cc.o -[151/297] rm -f src/libcommon.a && gcc-ar csrDT src/libcommon.a src/libcommon.a.p/tree_newick-tokenizer.cc.o src/libcommon.a.p/tree_sequencetree.cc.o src/libcommon.a.p/tree_tree.cc.o src/libcommon.a.p/tree_tree-util.cc.o src/libcommon.a.p/tree_randomtree.cc.o src/libcommon.a.p/tree-align_n_indels.cc.o src/libcommon.a.p/sequence_alphabet.cc.o src/libcommon.a.p/sequence_sequence.cc.o src/libcommon.a.p/sequence_sequence-format.cc.o src/libcommon.a.p/tools_read-trees.cc.o src/libcommon.a.p/alignment_alignment-util.cc.o src/libcommon.a.p/alignment_load.cc.o src/libcommon.a.p/alignment_alignment.cc.o src/libcommon.a.p/alignment_alignment-random.cc.o src/libcommon.a.p/alignment_index-matrix.cc.o src/libcommon.a.p/tree-align_link.cc.o src/libcommon.a.p/models_path.cc.o src/libcommon.a.p/tools_statistics.cc.o src/libcommon.a.p/tools_partition.cc.o src/libcommon.a.p/tools_tree-dist.cc.o src/libcommon.a.p/tools_parsimony.cc.o src/libcommon.a.p/tools_mctree.cc.o src/libcommon.a.p/tools_stats-table.cc.o src/libcommon.a.p/tools_findroot.cc.o src/libcommon.a.p/tools_optimize.cc.o src/libcommon.a.p/tools_distance-report.cc.o src/libcommon.a.p/tools_inverse.cc.o src/libcommon.a.p/tools_joint-A-T.cc.o src/libcommon.a.p/tools_distance-methods.cc.o src/libcommon.a.p/tools_consensus-tree.cc.o -[152/297] rm -f src/computation/libcomputation.a && gcc-ar csrDT src/computation/libcomputation.a src/computation/libcomputation.a.p/object.cc.o src/computation/libcomputation.a.p/closure.cc.o src/computation/libcomputation.a.p/program.cc.o src/computation/libcomputation.a.p/preprocess.cc.o src/computation/libcomputation.a.p/module.cc.o src/computation/libcomputation.a.p/loader.cc.o src/computation/libcomputation.a.p/context.cc.o src/computation/libcomputation.a.p/operations.cc.o src/computation/libcomputation.a.p/param.cc.o src/computation/libcomputation.a.p/parser_desugar.cc.o src/computation/libcomputation.a.p/parser_desugar-case.cc.o src/computation/libcomputation.a.p/parser_rename.cc.o src/computation/libcomputation.a.p/parser_driver.cc.o src/computation/libcomputation.a.p/parser_lexer.cc.o src/computation/libcomputation.a.p/parser_parser.cc.o src/computation/libcomputation.a.p/expression_operator.cc.o src/computation/libcomputation.a.p/expression_expression.cc.o src/computation/libcomputation.a.p/expression_constructor.cc.o src/computation/libcomputation.a.p/expression_expression_ref.cc.o src/computation/libcomputation.a.p/expression_AST_node.cc.o src/computation/libcomputation.a.p/expression_apply.cc.o src/computation/libcomputation.a.p/expression_substitute.cc.o src/computation/libcomputation.a.p/expression_indexify.cc.o src/computation/libcomputation.a.p/expression_let.cc.o src/computation/libcomputation.a.p/expression_case.cc.o src/computation/libcomputation.a.p/expression_trim.cc.o src/computation/libcomputation.a.p/expression_tuple.cc.o src/computation/libcomputation.a.p/expression_list.cc.o src/computation/libcomputation.a.p/expression_var.cc.o src/computation/libcomputation.a.p/expression_lambda.cc.o src/computation/libcomputation.a.p/expression_random_variable.cc.o src/computation/libcomputation.a.p/expression_modifiable.cc.o src/computation/libcomputation.a.p/expression_reg_var.cc.o src/computation/libcomputation.a.p/expression_bool.cc.o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o src/computation/libcomputation.a.p/expression_maybe.cc.o src/computation/libcomputation.a.p/expression_do_block.cc.o src/computation/libcomputation.a.p/machine_args.cc.o src/computation/libcomputation.a.p/machine_tokens.cc.o src/computation/libcomputation.a.p/machine_graph_register.cc.o src/computation/libcomputation.a.p/machine_show_graph.cc.o src/computation/libcomputation.a.p/machine_evaluate.cc.o src/computation/libcomputation.a.p/machine_sums.cc.o src/computation/libcomputation.a.p/machine_gc.cc.o src/computation/libcomputation.a.p/machine_reroot.cc.o src/computation/libcomputation.a.p/machine_effects.cc.o src/computation/libcomputation.a.p/expression_kind.cc.o src/computation/libcomputation.a.p/optimization_free-vars.cc.o src/computation/libcomputation.a.p/optimization_set-levels.cc.o src/computation/libcomputation.a.p/optimization_float-out.cc.o src/computation/libcomputation.a.p/optimization_occurrence.cc.o src/computation/libcomputation.a.p/optimization_inliner.cc.o src/computation/libcomputation.a.p/optimization_simplifier.cc.o +[149/297] rm -f src/util/libutil.a && gcc-ar csrDT src/util/libutil.a src/util/libutil.a.p/string_pred.cc.o src/util/libutil.a.p/string_sanitize.cc.o src/util/libutil.a.p/string_strip.cc.o src/util/libutil.a.p/string_split.cc.o src/util/libutil.a.p/log-level.cc.o src/util/libutil.a.p/io.cc.o src/util/libutil.a.p/graph.cc.o src/util/libutil.a.p/range.cc.o src/util/libutil.a.p/demangle.cc.o src/util/libutil.a.p/mapping.cc.o src/util/libutil.a.p/cmdline.cc.o src/util/libutil.a.p/rng.cc.o src/util/libutil.a.p/permute.cc.o src/util/libutil.a.p/file-paths.cc.o src/util/libutil.a.p/ptree.cc.o src/util/libutil.a.p/text.cc.o src/util/libutil.a.p/myexception.cc.o src/util/libutil.a.p/time.cc.o src/util/libutil.a.p/file-readers.cc.o +[150/297] rm -f src/libcommon.a && gcc-ar csrDT src/libcommon.a src/libcommon.a.p/tree_newick-tokenizer.cc.o src/libcommon.a.p/tree_sequencetree.cc.o src/libcommon.a.p/tree_tree.cc.o src/libcommon.a.p/tree_tree-util.cc.o src/libcommon.a.p/tree_randomtree.cc.o src/libcommon.a.p/tree-align_n_indels.cc.o src/libcommon.a.p/sequence_alphabet.cc.o src/libcommon.a.p/sequence_sequence.cc.o src/libcommon.a.p/sequence_sequence-format.cc.o src/libcommon.a.p/tools_read-trees.cc.o src/libcommon.a.p/alignment_alignment-util.cc.o src/libcommon.a.p/alignment_load.cc.o src/libcommon.a.p/alignment_alignment.cc.o src/libcommon.a.p/alignment_alignment-random.cc.o src/libcommon.a.p/alignment_index-matrix.cc.o src/libcommon.a.p/tree-align_link.cc.o src/libcommon.a.p/models_path.cc.o src/libcommon.a.p/tools_statistics.cc.o src/libcommon.a.p/tools_partition.cc.o src/libcommon.a.p/tools_tree-dist.cc.o src/libcommon.a.p/tools_parsimony.cc.o src/libcommon.a.p/tools_mctree.cc.o src/libcommon.a.p/tools_stats-table.cc.o src/libcommon.a.p/tools_findroot.cc.o src/libcommon.a.p/tools_optimize.cc.o src/libcommon.a.p/tools_distance-report.cc.o src/libcommon.a.p/tools_inverse.cc.o src/libcommon.a.p/tools_joint-A-T.cc.o src/libcommon.a.p/tools_distance-methods.cc.o src/libcommon.a.p/tools_consensus-tree.cc.o +[151/297] rm -f src/computation/libcomputation.a && gcc-ar csrDT src/computation/libcomputation.a src/computation/libcomputation.a.p/object.cc.o src/computation/libcomputation.a.p/closure.cc.o src/computation/libcomputation.a.p/program.cc.o src/computation/libcomputation.a.p/preprocess.cc.o src/computation/libcomputation.a.p/module.cc.o src/computation/libcomputation.a.p/loader.cc.o src/computation/libcomputation.a.p/context.cc.o src/computation/libcomputation.a.p/operations.cc.o src/computation/libcomputation.a.p/param.cc.o src/computation/libcomputation.a.p/parser_desugar.cc.o src/computation/libcomputation.a.p/parser_desugar-case.cc.o src/computation/libcomputation.a.p/parser_rename.cc.o src/computation/libcomputation.a.p/parser_driver.cc.o src/computation/libcomputation.a.p/parser_lexer.cc.o src/computation/libcomputation.a.p/parser_parser.cc.o src/computation/libcomputation.a.p/expression_operator.cc.o src/computation/libcomputation.a.p/expression_expression.cc.o src/computation/libcomputation.a.p/expression_constructor.cc.o src/computation/libcomputation.a.p/expression_expression_ref.cc.o src/computation/libcomputation.a.p/expression_AST_node.cc.o src/computation/libcomputation.a.p/expression_apply.cc.o src/computation/libcomputation.a.p/expression_substitute.cc.o src/computation/libcomputation.a.p/expression_indexify.cc.o src/computation/libcomputation.a.p/expression_let.cc.o src/computation/libcomputation.a.p/expression_case.cc.o src/computation/libcomputation.a.p/expression_trim.cc.o src/computation/libcomputation.a.p/expression_tuple.cc.o src/computation/libcomputation.a.p/expression_list.cc.o src/computation/libcomputation.a.p/expression_var.cc.o src/computation/libcomputation.a.p/expression_lambda.cc.o src/computation/libcomputation.a.p/expression_random_variable.cc.o src/computation/libcomputation.a.p/expression_modifiable.cc.o src/computation/libcomputation.a.p/expression_reg_var.cc.o src/computation/libcomputation.a.p/expression_bool.cc.o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o src/computation/libcomputation.a.p/expression_maybe.cc.o src/computation/libcomputation.a.p/expression_do_block.cc.o src/computation/libcomputation.a.p/machine_args.cc.o src/computation/libcomputation.a.p/machine_tokens.cc.o src/computation/libcomputation.a.p/machine_graph_register.cc.o src/computation/libcomputation.a.p/machine_show_graph.cc.o src/computation/libcomputation.a.p/machine_evaluate.cc.o src/computation/libcomputation.a.p/machine_sums.cc.o src/computation/libcomputation.a.p/machine_gc.cc.o src/computation/libcomputation.a.p/machine_reroot.cc.o src/computation/libcomputation.a.p/machine_effects.cc.o src/computation/libcomputation.a.p/expression_kind.cc.o src/computation/libcomputation.a.p/optimization_free-vars.cc.o src/computation/libcomputation.a.p/optimization_set-levels.cc.o src/computation/libcomputation.a.p/optimization_float-out.cc.o src/computation/libcomputation.a.p/optimization_occurrence.cc.o src/computation/libcomputation.a.p/optimization_inliner.cc.o src/computation/libcomputation.a.p/optimization_simplifier.cc.o +[152/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-util2.cc.o -MF src/libbaliphy.a.p/alignment_alignment-util2.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-util2.cc.o -c ../src/alignment/alignment-util2.cc [153/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/version.cc.o -MF src/libbaliphy.a.p/version.cc.o.d -o src/libbaliphy.a.p/version.cc.o -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; @@ -3398,8 +3434,7 @@ ../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 122 | system(cmd.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~ -[158/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/help.cc.o -MF src/bali-phy/bali-phy.p/help.cc.o.d -o src/bali-phy/bali-phy.p/help.cc.o -c ../src/bali-phy/help.cc -[159/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/files.cc.o -MF src/bali-phy/bali-phy.p/files.cc.o.d -o src/bali-phy/bali-phy.p/files.cc.o -c ../src/bali-phy/files.cc +[158/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/files.cc.o -MF src/bali-phy/bali-phy.p/files.cc.o.d -o src/bali-phy/bali-phy.p/files.cc.o -c ../src/bali-phy/files.cc ../src/bali-phy/files.cc: In function ‘std::string run_name(const boost::program_options::variables_map&)’: ../src/bali-phy/files.cc:100:68: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations] 100 | auto filename = remove_extension( fs::path( name ).leaf().string() ); @@ -3419,10 +3454,14 @@ /usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[160/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/system.cc.o -MF src/bali-phy/bali-phy.p/system.cc.o.d -o src/bali-phy/bali-phy.p/system.cc.o -c ../src/bali-phy/system.cc -[161/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/A-T-model.cc.o -MF src/bali-phy/bali-phy.p/A-T-model.cc.o.d -o src/bali-phy/bali-phy.p/A-T-model.cc.o -c ../src/bali-phy/A-T-model.cc -[162/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/paths.cc.o -MF src/bali-phy/bali-phy.p/paths.cc.o.d -o src/bali-phy/bali-phy.p/paths.cc.o -c ../src/bali-phy/paths.cc -[163/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/loggers.cc.o -MF src/bali-phy/bali-phy.p/loggers.cc.o.d -o src/bali-phy/bali-phy.p/loggers.cc.o -c ../src/bali-phy/loggers.cc +[159/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/system.cc.o -MF src/bali-phy/bali-phy.p/system.cc.o.d -o src/bali-phy/bali-phy.p/system.cc.o -c ../src/bali-phy/system.cc +[160/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/help.cc.o -MF src/bali-phy/bali-phy.p/help.cc.o.d -o src/bali-phy/bali-phy.p/help.cc.o -c ../src/bali-phy/help.cc +[161/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/paths.cc.o -MF src/bali-phy/bali-phy.p/paths.cc.o.d -o src/bali-phy/bali-phy.p/paths.cc.o -c ../src/bali-phy/paths.cc +[162/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/A-T-model.cc.o -MF src/bali-phy/bali-phy.p/A-T-model.cc.o.d -o src/bali-phy/bali-phy.p/A-T-model.cc.o -c ../src/bali-phy/A-T-model.cc +[163/297] c++ -Isrc/builtins/Array.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Array.so.p/Array.cc.o -MF src/builtins/Array.so.p/Array.cc.o.d -o src/builtins/Array.so.p/Array.cc.o -c ../src/builtins/Array.cc +[164/297] c++ -Isrc/builtins/Data.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Data.so.p/Data.cc.o -MF src/builtins/Data.so.p/Data.cc.o.d -o src/builtins/Data.so.p/Data.cc.o -c ../src/builtins/Data.cc +[165/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/cmd_line.cc.o -MF src/bali-phy/bali-phy.p/cmd_line.cc.o.d -o src/bali-phy/bali-phy.p/cmd_line.cc.o -c ../src/bali-phy/cmd_line.cc +[166/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/loggers.cc.o -MF src/bali-phy/bali-phy.p/loggers.cc.o.d -o src/bali-phy/bali-phy.p/loggers.cc.o -c ../src/bali-phy/loggers.cc ../src/bali-phy/loggers.cc: In function ‘owned_ptr > > construct_table_function(owned_ptr&, const std::vector >&)’: ../src/bali-phy/loggers.cc:247:29: warning: possibly dangling reference to a temporary [-Wdangling-reference] 247 | const alphabet& a = (*P)[i].get_alphabet(); @@ -3430,29 +3469,27 @@ ../src/bali-phy/loggers.cc:247:53: note: the temporary was destroyed at the end of the full expression ‘(& P.owned_ptr::operator*())->Parameters::operator[](i).mutable_data_partition::data_partition.data_partition::get_alphabet()’ 247 | const alphabet& a = (*P)[i].get_alphabet(); | ~~~~~~~~~~~~~~~~~~~~^~ -[164/297] c++ -Isrc/builtins/Array.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Array.so.p/Array.cc.o -MF src/builtins/Array.so.p/Array.cc.o.d -o src/builtins/Array.so.p/Array.cc.o -c ../src/builtins/Array.cc -[165/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/cmd_line.cc.o -MF src/bali-phy/bali-phy.p/cmd_line.cc.o.d -o src/bali-phy/bali-phy.p/cmd_line.cc.o -c ../src/bali-phy/cmd_line.cc -[166/297] c++ -Isrc/builtins/Data.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Data.so.p/Data.cc.o -MF src/builtins/Data.so.p/Data.cc.o.d -o src/builtins/Data.so.p/Data.cc.o -c ../src/builtins/Data.cc [167/297] c++ -Isrc/builtins/Pair.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Pair.so.p/Pair.cc.o -MF src/builtins/Pair.so.p/Pair.cc.o.d -o src/builtins/Pair.so.p/Pair.cc.o -c ../src/builtins/Pair.cc [168/297] c++ -Isrc/builtins/Prelude.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Prelude.so.p/Prelude.cc.o -MF src/builtins/Prelude.so.p/Prelude.cc.o.d -o 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-ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SMC.so.p/SMC.cc.o -MF src/builtins/SMC.so.p/SMC.cc.o.d -o src/builtins/SMC.so.p/SMC.cc.o -c ../src/builtins/SMC.cc +[187/297] c++ -Isrc/statreport.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/statreport.p/tools_statreport.cc.o -MF src/statreport.p/tools_statreport.cc.o.d -o src/statreport.p/tools_statreport.cc.o -c ../src/tools/statreport.cc ../src/tools/statreport.cc: In function ‘void show_mode(const std::string&, const std::vector >&, int, const std::vector&, bool)’: ../src/tools/statreport.cc:300:24: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 300 | auto m = mode(total); @@ -3541,15 +3578,14 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[187/297] c++ -Isrc/stats-select.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/stats-select.p/tools_stats-select.cc.o -MF src/stats-select.p/tools_stats-select.cc.o.d -o 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-I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -MF src/trees-bootstrap.p/tools_trees-bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -c ../src/tools/trees-bootstrap.cc ../src/tools/trees-bootstrap.cc: In function ‘std::pair am_sdsf(const tree_sample_collection&, int, const std::map, p_counts>&, double)’: ../src/tools/trees-bootstrap.cc:567:117: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -3680,8 +3716,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -[212/297] c++ -Isrc/extract-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK 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-DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-subsample.p/tools_subsample.cc.o -MF src/bali-subsample.p/tools_subsample.cc.o.d -o src/bali-subsample.p/tools_subsample.cc.o -c ../src/tools/subsample.cc +[212/297] c++ -Isrc/bali-subsample.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/bali-subsample.p/tools_subsample.cc.o -MF src/bali-subsample.p/tools_subsample.cc.o.d -o src/bali-subsample.p/tools_subsample.cc.o -c ../src/tools/subsample.cc +[213/297] c++ -Isrc/extract-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/extract-ancestors.p/tools_extract-ancestors.cc.o -MF src/extract-ancestors.p/tools_extract-ancestors.cc.o.d -o src/extract-ancestors.p/tools_extract-ancestors.cc.o -c ../src/tools/extract-ancestors.cc [214/297] c++ -o src/bali-phy/bali-phy src/bali-phy/bali-phy.p/link-partitions.cc.o src/bali-phy/bali-phy.p/bali-phy.cc.o src/bali-phy/bali-phy.p/help.cc.o src/bali-phy/bali-phy.p/A-T-model.cc.o src/bali-phy/bali-phy.p/files.cc.o src/bali-phy/bali-phy.p/loggers.cc.o src/bali-phy/bali-phy.p/system.cc.o src/bali-phy/bali-phy.p/cmd_line.cc.o src/bali-phy/bali-phy.p/paths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -ldl -lm -Wl,--end-group [215/297] c++ -o src/builtins/Array.so src/builtins/Array.so.p/Array.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group [216/297] c++ -o src/builtins/Data.so src/builtins/Data.so.p/Data.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group @@ -3700,56 +3736,56 @@ [229/297] c++ -o src/builtins/SMC.so src/builtins/SMC.so.p/SMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group [230/297] c++ -o src/builtins/Real.so src/builtins/Real.so.p/Real.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group [231/297] c++ -o src/builtins/Bits.so src/builtins/Bits.so.p/Bits.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group -[232/297] c++ -Isrc/draw-tree.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/draw-tree.p/tools_draw-tree.cc.o -MF src/draw-tree.p/tools_draw-tree.cc.o.d -o src/draw-tree.p/tools_draw-tree.cc.o -c ../src/tools/draw-tree.cc +[232/297] c++ -o src/builtins/Foreign.so src/builtins/Foreign.so.p/Foreign.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group +[233/297] c++ -o src/builtins/Text.so src/builtins/Text.so.p/Text.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group +[234/297] c++ -o src/builtins/Char.so src/builtins/Char.so.p/Char.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group +[235/297] c++ -o src/model_P src/model_P.p/tools_model_P.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[236/297] c++ -o src/statreport src/statreport.p/tools_statreport.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[237/297] c++ -o src/stats-select src/stats-select.p/tools_stats-select.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[238/297] c++ -o src/alignment-gild src/alignment-gild.p/tools_alignment-gild.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[239/297] c++ -o src/alignment-consensus src/alignment-consensus.p/tools_alignment-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[240/297] c++ -o src/alignment-max src/alignment-max.p/tools_alignment-max.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[241/297] c++ -o src/alignment-chop-internal src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[242/297] c++ -o src/alignment-indices src/alignment-indices.p/tools_alignment-indices.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[243/297] c++ -o src/alignment-info src/alignment-info.p/tools_alignment-info.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[244/297] c++ -o src/alignment-cat src/alignment-cat.p/tools_alignment-cat.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[245/297] c++ -o src/alignment-translate src/alignment-translate.p/tools_alignment-translate.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[246/297] c++ -o src/alignment-find src/alignment-find.p/tools_alignment-find.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[247/297] c++ -Isrc/draw-tree.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/draw-tree.p/tools_draw-tree.cc.o -MF src/draw-tree.p/tools_draw-tree.cc.o.d -o src/draw-tree.p/tools_draw-tree.cc.o -c ../src/tools/draw-tree.cc ../src/tools/draw-tree.cc: In function ‘MC_tree_with_lengths collapse_MC_tree(const MC_tree_with_lengths&)’: ../src/tools/draw-tree.cc:3351:17: warning: unused variable ‘right1’ [-Wunused-variable] 3351 | int right1 = MC1.mapping[b1]; | ^~~~~~ -[233/297] c++ -o src/builtins/Foreign.so src/builtins/Foreign.so.p/Foreign.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group -[234/297] c++ -o src/builtins/Text.so src/builtins/Text.so.p/Text.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group -[235/297] c++ -o src/builtins/Char.so src/builtins/Char.so.p/Char.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -Wl,--end-group -[236/297] c++ -o src/model_P src/model_P.p/tools_model_P.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[237/297] c++ -o src/statreport src/statreport.p/tools_statreport.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[238/297] c++ -o src/stats-select src/stats-select.p/tools_stats-select.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[239/297] c++ -o src/alignment-gild src/alignment-gild.p/tools_alignment-gild.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[240/297] c++ -o src/alignment-consensus src/alignment-consensus.p/tools_alignment-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[241/297] c++ -o src/alignment-max src/alignment-max.p/tools_alignment-max.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[242/297] c++ -o src/alignment-chop-internal src/alignment-chop-internal.p/tools_alignment-chop-internal.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[243/297] c++ -Isrc/summarize-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -MF src/summarize-ancestors.p/tools_summarize-ancestors.cc.o.d -o src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -c ../src/tools/summarize-ancestors.cc -[244/297] c++ -o src/alignment-indices src/alignment-indices.p/tools_alignment-indices.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[245/297] c++ -o src/alignment-info src/alignment-info.p/tools_alignment-info.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[246/297] c++ -o src/alignment-cat src/alignment-cat.p/tools_alignment-cat.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[247/297] c++ -o src/alignment-translate src/alignment-translate.p/tools_alignment-translate.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[248/297] c++ -o src/alignment-find src/alignment-find.p/tools_alignment-find.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[249/297] c++ -o src/trees-consensus src/trees-consensus.p/tools_trees-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[250/297] c++ -o src/tree-mean-lengths src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[251/297] c++ -o src/mctree-mean-lengths src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[252/297] c++ -o src/trees-to-SRQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[253/297] c++ -o src/pickout src/pickout.p/tools_pickout.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[254/297] c++ -o src/cut-range src/cut-range.p/tools_cut-range.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[255/297] c++ -o src/trees-distances src/trees-distances.p/tools_trees-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[256/297] c++ -o src/alignment-thin src/alignment-thin.p/tools_alignment-thin.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[257/297] c++ -o src/alignments-diff src/alignments-diff.p/tools_alignments-diff.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[258/297] c++ -o src/tree-tool src/tree-tool.p/tools_tree-tool.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[259/297] c++ -o src/alignment-distances src/alignment-distances.p/tools_alignment-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[260/297] c++ -o src/alignment-draw src/alignment-draw.p/tools_alignment-draw.cc.o src/alignment-draw.p/tools_colors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[261/297] c++ -o src/trees-bootstrap src/trees-bootstrap.p/tools_trees-bootstrap.cc.o src/trees-bootstrap.p/tools_bootstrap.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[262/297] c++ -o src/draw-tree src/draw-tree.p/tools_draw-tree.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm /usr/lib/arm-linux-gnueabihf/libcairo.so -Wl,--end-group -[263/297] c++ -o src/extract-ancestors src/extract-ancestors.p/tools_extract-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[264/297] c++ -o src/summarize-ancestors src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[265/297] c++ -o src/bali-subsample src/bali-subsample.p/tools_subsample.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group -[266/297] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man ../doc/man/model_P.md -[267/297] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man ../doc/man/statreport.md -[268/297] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man ../doc/man/bali-phy.md -[269/297] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man ../doc/man/stats-select.md -[270/297] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-gild.md -[271/297] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-consensus.md -[272/297] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-chop-internal.md -[273/297] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-max.md -[274/297] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-indices.md +[248/297] c++ -o src/trees-consensus src/trees-consensus.p/tools_trees-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[249/297] c++ -o src/tree-mean-lengths src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[250/297] c++ -o src/mctree-mean-lengths src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[251/297] c++ -o src/pickout src/pickout.p/tools_pickout.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[252/297] c++ -o src/cut-range src/cut-range.p/tools_cut-range.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[253/297] c++ -o src/trees-to-SRQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[254/297] c++ -o src/trees-distances src/trees-distances.p/tools_trees-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[255/297] c++ -o src/alignment-thin src/alignment-thin.p/tools_alignment-thin.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[256/297] c++ -o src/alignments-diff src/alignments-diff.p/tools_alignments-diff.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[257/297] c++ -o src/tree-tool src/tree-tool.p/tools_tree-tool.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[258/297] c++ -o src/alignment-distances src/alignment-distances.p/tools_alignment-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[259/297] c++ -o src/alignment-draw src/alignment-draw.p/tools_alignment-draw.cc.o src/alignment-draw.p/tools_colors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[260/297] c++ -o src/trees-bootstrap src/trees-bootstrap.p/tools_trees-bootstrap.cc.o src/trees-bootstrap.p/tools_bootstrap.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[261/297] c++ -o src/draw-tree src/draw-tree.p/tools_draw-tree.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm /usr/lib/arm-linux-gnueabihf/libcairo.so -Wl,--end-group +[262/297] c++ -o src/extract-ancestors src/extract-ancestors.p/tools_extract-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[263/297] c++ -o src/bali-subsample src/bali-subsample.p/tools_subsample.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group +[264/297] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man ../doc/man/model_P.md +[265/297] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man ../doc/man/bali-phy.md +[266/297] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man ../doc/man/statreport.md +[267/297] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-gild.md +[268/297] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man ../doc/man/stats-select.md +[269/297] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-consensus.md +[270/297] c++ -Isrc/summarize-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_RANDOM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_ALL_NO_LIB -MD -MQ src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -MF src/summarize-ancestors.p/tools_summarize-ancestors.cc.o.d -o src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -c ../src/tools/summarize-ancestors.cc +[271/297] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-chop-internal.md +[272/297] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-max.md +[273/297] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-indices.md +[274/297] c++ -o src/summarize-ancestors src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -g0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_random.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.83.0 -lm -Wl,--end-group [275/297] /usr/bin/meson --internal exe --capture doc/alignment-info.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-info.md -[276/297] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-translate.md -[277/297] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-cat.md +[276/297] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-cat.md +[277/297] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-translate.md [278/297] /usr/bin/meson --internal exe --capture doc/alignment-find.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-find.md [279/297] /usr/bin/meson --internal exe --capture doc/tree-mean-lengths.1 -- /usr/bin/pandoc -s -t man ../doc/man/tree-mean-lengths.md [280/297] /usr/bin/meson --internal exe --capture doc/trees-consensus.1 -- /usr/bin/pandoc -s -t man ../doc/man/trees-consensus.md @@ -3757,59 +3793,59 @@ [282/297] /usr/bin/meson --internal exe --capture doc/trees-to-SRQ.1 -- /usr/bin/pandoc -s -t man ../doc/man/trees-to-SRQ.md [283/297] /usr/bin/meson --internal exe --capture doc/pickout.1 -- /usr/bin/pandoc -s -t man ../doc/man/pickout.md [284/297] /usr/bin/meson --internal exe --capture doc/cut-range.1 -- /usr/bin/pandoc -s -t man ../doc/man/cut-range.md -[285/297] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignments-diff.md -[286/297] /usr/bin/meson --internal exe --capture doc/trees-distances.1 -- /usr/bin/pandoc -s -t man ../doc/man/trees-distances.md -[287/297] /usr/bin/meson --internal exe --capture doc/alignment-thin.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-thin.md +[285/297] /usr/bin/meson --internal exe --capture doc/trees-distances.1 -- /usr/bin/pandoc -s -t man ../doc/man/trees-distances.md +[286/297] /usr/bin/meson --internal exe --capture doc/alignment-thin.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-thin.md +[287/297] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignments-diff.md [288/297] /usr/bin/meson --internal exe --capture doc/tree-tool.1 -- /usr/bin/pandoc -s -t man ../doc/man/tree-tool.md [289/297] /usr/bin/meson --internal exe --capture doc/alignment-distances.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-distances.md [290/297] /usr/bin/meson --internal exe --capture doc/alignment-draw.1 -- /usr/bin/pandoc -s -t man ../doc/man/alignment-draw.md [291/297] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man ../doc/man/trees-bootstrap.md -[292/297] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man ../doc/man/extract-ancestors.md -[293/297] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man ../doc/man/draw-tree.md +[292/297] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man ../doc/man/draw-tree.md +[293/297] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man ../doc/man/extract-ancestors.md [294/297] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man ../doc/man/summarize-ancestors.md [295/297] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man ../doc/man/bali-subsample.md [296/297] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man ../doc/man/bp-analyze.md [297/297] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man ../doc/man/bali-phy-pkg.md dh_auto_test -O--buildsystem=meson - cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=3 meson test + cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 meson test ninja: Entering directory `/build/reproducible-path/bali-phy-3.6.1+dfsg/obj-arm-linux-gnueabihf' [1/4] Generating src/git-version.h with a custom command - 1/36 bali-phy version OK 0.03s - 2/36 bali-phy help OK 0.03s - 3/36 bali-phy 5d test OK 8.28s - 4/36 bali-phy 5d +A 50 OK 24.30s - 5/36 model_P --help OK 0.02s - 6/36 statreport --help OK 0.02s - 7/36 stats-select --help OK 0.02s - 8/36 alignment-gild --help OK 0.02s - 9/36 alignment-consensus --help OK 0.02s -10/36 alignment-max --help OK 0.02s -11/36 alignment-chop-internal --help OK 0.02s -12/36 alignment-indices --help OK 0.02s -13/36 alignment-info --help OK 0.02s -14/36 alignment-cat --help OK 0.02s -15/36 alignment-translate --help OK 0.02s -16/36 alignment-find --help OK 0.02s -17/36 trees-consensus --help OK 0.02s -18/36 tree-mean-lengths --help OK 0.02s -19/36 mctree-mean-lengths --help OK 0.02s -20/36 trees-to-SRQ --help OK 0.02s -21/36 pickout --help OK 0.02s -22/36 cut-range --help OK 0.02s -23/36 trees-distances --help OK 0.02s -24/36 alignment-thin --help OK 0.02s -25/36 alignments-diff --help OK 0.02s -26/36 tree-tool --help OK 0.02s -27/36 alignment-distances --help OK 0.02s -28/36 alignment-draw --help OK 0.02s -29/36 trees-bootstrap --help OK 0.02s -30/36 draw-tree --help OK 0.03s -31/36 extract-ancestors --help OK 0.02s -32/36 summarize-ancestors --help OK 0.02s -33/36 subsample --help OK 0.02s -34/36 bali-phy 5d -A 200 OK 18.11s -35/36 bali-phy 48 +A 3 OK 39.52s -36/36 bali-phy testsuite OK 610.41s + 1/36 bali-phy version OK 0.06s + 2/36 bali-phy help OK 0.05s + 3/36 bali-phy 5d test OK 5.53s + 4/36 model_P --help OK 0.02s + 5/36 statreport --help OK 0.02s + 6/36 stats-select --help OK 0.03s + 7/36 alignment-gild --help OK 0.03s + 8/36 alignment-consensus --help OK 0.03s + 9/36 alignment-max --help OK 0.02s +10/36 alignment-chop-internal --help OK 0.02s +11/36 alignment-indices --help OK 0.02s +12/36 alignment-info --help OK 0.02s +13/36 alignment-cat --help OK 0.02s +14/36 alignment-translate --help OK 0.03s +15/36 alignment-find --help OK 0.03s +16/36 trees-consensus --help OK 0.03s +17/36 tree-mean-lengths --help OK 0.03s +18/36 mctree-mean-lengths --help OK 0.02s +19/36 trees-to-SRQ --help OK 0.02s +20/36 pickout --help OK 0.02s +21/36 cut-range --help OK 0.02s +22/36 trees-distances --help OK 0.02s +23/36 alignment-thin --help OK 0.02s +24/36 alignments-diff --help OK 0.02s +25/36 tree-tool --help OK 0.02s +26/36 alignment-distances --help OK 0.03s +27/36 alignment-draw --help OK 0.03s +28/36 trees-bootstrap --help OK 0.03s +29/36 draw-tree --help OK 0.04s +30/36 extract-ancestors --help OK 0.03s +31/36 summarize-ancestors --help OK 0.02s +32/36 subsample --help OK 0.02s +33/36 bali-phy 5d -A 200 OK 10.71s +34/36 bali-phy 5d +A 50 OK 15.12s +35/36 bali-phy 48 +A 3 OK 27.90s +36/36 bali-phy testsuite OK 410.56s Ok: 36 Expected Fail: 0 @@ -3827,443 +3863,443 @@ [1/5] Generating src/git-version.h with a custom command [1/2] Installing files. Installing subdir /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/MCMC.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Tree.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/IModel.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SMC.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/PopGen.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Prelude.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Parse.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/MCMC.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Parameters.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SMC.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Tree.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/PopGen.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Range.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Control/DeepSeq.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Control/Monad.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Tree/Newick.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Tree +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel/ReversibleMarkov.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel/Likelihood.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel/Codons.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel/Doublets.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel/Likelihood.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel/Nucleotides.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel/ReversibleMarkov.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/SModel/Frequency.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/System/Environment.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/System -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Array.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/List.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Bool.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Char.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Alphabet.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Sequence.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment/Matrix.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment/Pairwise.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/BAliPhy/ATModel.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/BAliPhy/ATModel/DataPartition.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Foreign/Vector.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Foreign/Introspection.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Foreign/String.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Foreign/Pair.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Matrix.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Ix.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Tuple.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/BitVector.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Either.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Matrix.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Array.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Text.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Ord.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Either.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Bool.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/BitVector.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Set.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Maybe.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/ReadFile.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Char.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/JSON.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Text.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Function.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Map.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Maybe.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/Eq.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Tree/Newick.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Tree -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/Base.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/Real.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/List.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Data/ReadFile.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/IO.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/Real.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/Num.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/ST.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/Enum.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Foreign/Vector.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Foreign/String.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Foreign/Pair.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Foreign/Introspection.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/Base.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Compiler/ST.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Random.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Exponential.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Cauchy.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/ExpTransform.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Dirichlet.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/List.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Gamma.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/DirichletProcess.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Mixture.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Binomial.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/ExpTransform.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/RandomAlignment.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Tree.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Cauchy.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Categorical.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Geometric.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Poisson.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Mixture.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Exponential.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Beta.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Laplace.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Bernoulli.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Discrete.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/DirichletProcess.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Uniform.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Gamma.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Beta.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Bernoulli.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Normal.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Tree.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Geometric.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/FakeDist.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/BAliPhy/ATModel.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/BAliPhy/ATModel/DataPartition.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Alphabet.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Sequence.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment/Pairwise.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment/Matrix.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Poisson.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/RandomAlignment.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Laplace.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/List.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/System/Environment.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/System +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Control/Monad.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/haskell/Control/DeepSeq.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control Installing subdir /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/fMutSel0.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/jtt.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m2a.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mg94.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mut_sel_aa.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/f1x4.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/get_q.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gwF.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/jc69.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/wag.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/iid.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/shifted_exponential.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/log_gamma.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/symmetric_dirichlet.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/symmetric_dirichlet_on.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/normal.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/poisson.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/exponential.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/cauchy.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/geometric.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/log_normal.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/shifted_gamma.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/gamma.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/uniform_int.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/uniform.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/log_laplace.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/beta.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/bernoulli.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/laplace.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/binomial.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gtr.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x3_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/rs05.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m8a.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/markov_modulate_mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/f3x4.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mg94_ext.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x3.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/inv.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/rs07_relaxed_rates.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x3x3.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m1a.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gy94.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/wag_freq.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x3_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x2x2.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/density.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m2a.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/empirical.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/get_q.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/hky85_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/f81.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/f61.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gtr.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gy94_ext.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/tn93.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m8.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/rs07.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gtr_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/lg08_freq.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/jc69.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/pam.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/density.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mg94.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/rna_16a.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/fe.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/fMutSel.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/branch_site.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m8a_test.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gy94_ext.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/wag_freq.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x2.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/jtt.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/sample.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mg94k.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/k80.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/f3x4.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/equ.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mut_sel.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/dNdS.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gwF.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x3x3.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/multiMixtureModel.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/parameter_mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/hky85.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/fMutSel0.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/k80.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/wag.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/f61.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/tn93_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mg94k.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/f1x4.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/tn93.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/lg08.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x2_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/f.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x3.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mg94_ext.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/rs07_relaxed_rates.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/equ.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m2a_test.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/lg08.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/hky85.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/rna_16a.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m8a_test.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m7.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/scaled_mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m8.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m1a.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m3_test.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/fMutSel.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/markov_modulate_mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/fe.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mut_sel_aa.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/scaled_mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m3.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/dNdS.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gy94.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/multi_rate.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/empirical.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/rs07.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/lg08_freq.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x2_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/parameter_mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/pam.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/mut_sel.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/tn93_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m8a.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/x2.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/hky85_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/gtr_sym.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Covarion/huelsenbeck02.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/m7.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Frequencies/uniform.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Covarion/ts98.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Covarion/wang07.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Covarion/huelsenbeck02.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Covarion/galtier01.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Frequencies/uniform.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Covarion/wang07.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Rates/free.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Rates/log_normal.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/models/Rates/gamma.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/getNucleotides.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/zipWith.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/letter_pairs.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/num_branches.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/zip.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/dna.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/log.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/rna.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/getAminoAcids.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/quantile.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/letters.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/add.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/exp.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/zipWith.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/rna.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/sin.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/length.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/unit_mixture.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/uniform_discretize.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/intToDouble.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/take.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/map.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/aa.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/div.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/tan.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/letter_pairs.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/quantile.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/zip.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/length.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/dna.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/sub.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/replicate.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/num_branches.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/cos.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/aa.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/sqrt.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/codons.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/map.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/getAminoAcids.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/cos.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/tan.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/standard_code.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/letters.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/exp.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/sin.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/mul.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/codons.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/constructors/Nil.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/div.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/getNucleotides.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/take.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/intToDouble.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/constructors/Cons.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/bernoulli.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/iid.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/beta.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/log_normal.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/shifted_gamma.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/symmetric_dirichlet_on.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/log_gamma.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/shifted_exponential.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/geometric.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/exponential.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/uniform.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/uniform_int.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/laplace.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/poisson.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/gamma.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/symmetric_dirichlet.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/normal.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/cauchy.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/binomial.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/distributions/log_laplace.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/bindings/functions/constructors/Nil.json to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing subdir /build/reproducible-path/bali-phy-3.6.1+dfsg/help to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/parameters.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/alphabets.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/parameters/priors.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/alphabets/Doublets.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/alphabets/Codons.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/alphabets/genetic-code.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/alphabets/Doublets.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/alphabets/Triplets.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/parameters/priors.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/Rao-Blackwellize.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/pre-burnin.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/package-path.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/set.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/tree.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/align.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/scale.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/branch-lengths.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/seed.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/enable.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/iterations.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/subsample.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/disable.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/smodel.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/config.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/subsample.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/unalign.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/print.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/name.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/alphabet.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/version.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/scale.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/print.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/test.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/tree.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/imodel.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/config.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/link.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/branch-lengths.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/set.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/version.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/model.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/Rao-Blackwellize.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/name.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/enable.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/pre-burnin.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/verbose.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/seed.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/package-path.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/model.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/help/commands/imodel.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing subdir /build/reproducible-path/bali-phy-3.6.1+dfsg/examples to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo1.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo3.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This currently copies the file by default, but will be changed in a future version of Meson to copy the link instead. Set follow_symlinks to true to preserve current behavior, or false to copy the link. -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo4.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Coalmine.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This currently copies the file by default, but will be changed in a future version of Meson to copy the link instead. Set follow_symlinks to true to preserve current behavior, or false to copy the link. -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Airline.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo4.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This currently copies the file by default, but will be changed in a future version of Meson to copy the link instead. Set follow_symlinks to true to preserve current behavior, or false to copy the link. -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo2.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo6.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This currently copies the file by default, but will be changed in a future version of Meson to copy the link instead. Set follow_symlinks to true to preserve current behavior, or false to copy the link. -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo3.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo5.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This currently copies the file by default, but will be changed in a future version of Meson to copy the link instead. Set follow_symlinks to true to preserve current behavior, or false to copy the link. -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Coalmine.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Airline.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This currently copies the file by default, but will be changed in a future version of Meson to copy the link instead. Set follow_symlinks to true to preserve current behavior, or false to copy the link. -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo5.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo2.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This currently copies the file by default, but will be changed in a future version of Meson to copy the link instead. Set follow_symlinks to true to preserve current behavior, or false to copy the link. -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo6.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/models/Demo1.hs to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This currently copies the file by default, but will be changed in a future version of Meson to copy the link instead. Set follow_symlinks to true to preserve current behavior, or false to copy the link. -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ITS/5.8S.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.gb to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/keep.pl to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/NOTES.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/other.accessions to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/paper.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.aln to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-muscle.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/additional.accessions to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-muscle.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/table1.accessions to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-muscle.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Enolase/enolase-38.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.gb to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/NOTES.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/keep.pl to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/10-globins.xml to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/bglobin.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/some.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/many.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/many-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/globins.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/papain.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/orig.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/config.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/README.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/cleaned.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/config2.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/orig.nex to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/many-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/globins.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/many.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/some.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/10-globins.xml to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Globins/bglobin.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/HIVSIV.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.command to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.command to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/papain.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Enolase/enolase-38.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.aln to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/other.accessions to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/additional.accessions to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/paper.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-muscle.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/table1.accessions to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-muscle.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-muscle.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/config2.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/cleaned.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/README.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/config.txt to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/orig.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ferns/orig.nex to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/HIVSIV.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 -Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/ITS/5.8S.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr +Installing /build/reproducible-path/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing src/bali-phy/bali-phy to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/builtins/Array.so to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Data.so to /build/reproducible-path/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy @@ -4425,33 +4461,33 @@ diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/extract-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/summarize-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/extract-ancestors contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson @@ -4465,12 +4501,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/19772/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/19772/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/25788 and its subdirectories -I: Current time: Fri Oct 11 03:00:30 -12 2024 -I: pbuilder-time-stamp: 1728658830 +I: removing directory /srv/workspace/pbuilder/19772 and its subdirectories +I: Current time: Sat Oct 12 05:21:27 +14 2024 +I: pbuilder-time-stamp: 1728660087