Diff of the two buildlogs: -- --- b1/build.log 2024-04-11 18:39:56.914947619 +0000 +++ b2/build.log 2024-04-11 18:56:39.060213705 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 11 06:33:43 -12 2024 -I: pbuilder-time-stamp: 1712860423 +I: Current time: Fri Apr 12 08:40:08 +14 2024 +I: pbuilder-time-stamp: 1712860808 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking adapterremoval_2.3.3-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/26214/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12851/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4pro0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 11 18:40 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12851/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12851/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='0ef44b5dd37849fab3aef56d8085f536' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='26214' - PS1='# ' - PS2='> ' + INVOCATION_ID=21c60f14938d409082daeaefded19772 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12851 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bV7bBtfM/pbuilderrc_XxCS --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bV7bBtfM/b1 --logfile b1/build.log adapterremoval_2.3.3-2.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bV7bBtfM/pbuilderrc_e0sv --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bV7bBtfM/b2 --logfile b2/build.log adapterremoval_2.3.3-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64a 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 11 11:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/26214/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 9 11:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/12851/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -150,7 +182,7 @@ Get: 33 http://deb.debian.org/debian trixie/main armhf libgtest-dev armhf 1.14.0-1+b1 [240 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf markdown all 1.0.1-12 [17.7 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] -Fetched 20.0 MB in 1s (30.1 MB/s) +Fetched 20.0 MB in 1s (15.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) @@ -305,7 +337,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/adapterremoval-2.3.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../adapterremoval_2.3.3-2_source.changes +I: user script /srv/workspace/pbuilder/12851/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/12851/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/adapterremoval-2.3.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../adapterremoval_2.3.3-2_source.changes dpkg-buildpackage: info: source package adapterremoval dpkg-buildpackage: info: source version 2.3.3-2 dpkg-buildpackage: info: source distribution unstable @@ -315,13 +351,13 @@ debian/rules clean dh clean dh_auto_clean - make -j3 clean + make -j4 clean make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.3' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no -Cleaning tests ... -Cleaning documentation ... -Cleaning ... +\033[0;32mCleaning tests ...\033[0m +\033[0;32mCleaning documentation ...\033[0m +\033[0;32mCleaning ...\033[0m make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.3' dh_clean debian/rules binary @@ -332,37 +368,37 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/adapterremoval-2.3.3' dh_auto_build - make -j3 "INSTALL=install --strip-program=true" + make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.3' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no -Building build/main/adapterset.o from src/adapterset.cpp -Building build/main/alignment.o from src/alignment.cpp -Building build/main/alignment_tables.o from src/alignment_tables.cpp +\033[0;36mBuilding build/main/adapterset.o from src/adapterset.cpp\033[0m +\033[0;36mBuilding build/main/alignment.o from src/alignment.cpp\033[0m +\033[0;36mBuilding build/main/alignment_tables.o from src/alignment_tables.cpp\033[0m +\033[0;36mBuilding build/main/argparse.o from src/argparse.cpp\033[0m +\033[0;36mBuilding build/main/barcode_table.o from src/barcode_table.cpp\033[0m src/alignment.cpp:66:2: warning: #warning SEE optimizations disabled! [-Wcpp] 66 | #warning SEE optimizations disabled! | ^~~~~~~ -Building build/main/argparse.o from src/argparse.cpp -Building build/main/barcode_table.o from src/barcode_table.cpp -Building build/main/debug.o from src/debug.cpp -Building build/main/demultiplex.o from src/demultiplex.cpp -Building build/main/fastq.o from src/fastq.cpp -Building build/main/fastq_enc.o from src/fastq_enc.cpp -Building build/main/fastq_io.o from src/fastq_io.cpp -Building build/main/linereader.o from src/linereader.cpp -Building build/main/linereader_joined.o from src/linereader_joined.cpp -Building build/main/main_adapter_id.o from src/main_adapter_id.cpp -Building build/main/main_adapter_rm.o from src/main_adapter_rm.cpp -Building build/main/main_demultiplex.o from src/main_demultiplex.cpp -Building build/main/managed_writer.o from src/managed_writer.cpp -Building build/main/scheduler.o from src/scheduler.cpp -Building build/main/strutils.o from src/strutils.cpp -Building build/main/threads.o from src/threads.cpp -Building build/main/timer.o from src/timer.cpp -Building build/main/trimmed_reads.o from src/trimmed_reads.cpp -Building build/main/userconfig.o from src/userconfig.cpp -Building build/main/main.o from src/main.cpp -Linking executable build/AdapterRemoval +\033[0;36mBuilding build/main/debug.o from src/debug.cpp\033[0m +\033[0;36mBuilding build/main/demultiplex.o from src/demultiplex.cpp\033[0m +\033[0;36mBuilding build/main/fastq.o from src/fastq.cpp\033[0m +\033[0;36mBuilding build/main/fastq_enc.o from src/fastq_enc.cpp\033[0m +\033[0;36mBuilding build/main/fastq_io.o from src/fastq_io.cpp\033[0m +\033[0;36mBuilding build/main/linereader.o from src/linereader.cpp\033[0m +\033[0;36mBuilding build/main/linereader_joined.o from src/linereader_joined.cpp\033[0m +\033[0;36mBuilding build/main/main_adapter_id.o from src/main_adapter_id.cpp\033[0m +\033[0;36mBuilding build/main/main_adapter_rm.o from src/main_adapter_rm.cpp\033[0m +\033[0;36mBuilding build/main/main_demultiplex.o from src/main_demultiplex.cpp\033[0m +\033[0;36mBuilding build/main/managed_writer.o from src/managed_writer.cpp\033[0m +\033[0;36mBuilding build/main/scheduler.o from src/scheduler.cpp\033[0m +\033[0;36mBuilding build/main/strutils.o from src/strutils.cpp\033[0m +\033[0;36mBuilding build/main/threads.o from src/threads.cpp\033[0m +\033[0;36mBuilding build/main/timer.o from src/timer.cpp\033[0m +\033[0;36mBuilding build/main/trimmed_reads.o from src/trimmed_reads.cpp\033[0m +\033[0;36mBuilding build/main/userconfig.o from src/userconfig.cpp\033[0m +\033[0;36mBuilding build/main/main.o from src/main.cpp\033[0m +\033[0;32mLinking executable build/AdapterRemoval\033[0m make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.3' markdown README.md > README.html make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.3' @@ -373,7 +409,7 @@ make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.3' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no -Building build/tests/main_test.o from tests/unit/main_test.cpp +\033[0;36mBuilding build/tests/main_test.o from tests/unit/main_test.cpp\033[0m In file included from /usr/include/c++/13/vector:72, from tests/unit/catch.hpp:566, from tests/unit/main_test.cpp:2: @@ -387,25 +423,25 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -Building build/tests/debug.o from src/debug.cpp -Building build/tests/alignment.o from src/alignment.cpp +\033[0;36mBuilding build/tests/debug.o from src/debug.cpp\033[0m +\033[0;36mBuilding build/tests/alignment.o from src/alignment.cpp\033[0m src/alignment.cpp:66:2: warning: #warning SEE optimizations disabled! [-Wcpp] 66 | #warning SEE optimizations disabled! | ^~~~~~~ -Building build/tests/alignment_tables.o from src/alignment_tables.cpp -Building build/tests/alignment_test.o from tests/unit/alignment_test.cpp -Building build/tests/argparse.o from src/argparse.cpp -Building build/tests/argparse_test.o from tests/unit/argparse_test.cpp -Building build/tests/barcodes_test.o from tests/unit/barcodes_test.cpp -Building build/tests/barcode_table.o from src/barcode_table.cpp -Building build/tests/fastq.o from src/fastq.cpp -Building build/tests/fastq_test.o from tests/unit/fastq_test.cpp -Building build/tests/fastq_enc.o from src/fastq_enc.cpp -Building build/tests/fastq_enc_test.o from tests/unit/fastq_enc_test.cpp -Building build/tests/strutils.o from src/strutils.cpp -Building build/tests/strutils_test.o from tests/unit/strutils_test.cpp -Linking executable build/tests/main -Running unit tests +\033[0;36mBuilding build/tests/alignment_tables.o from src/alignment_tables.cpp\033[0m +\033[0;36mBuilding build/tests/alignment_test.o from tests/unit/alignment_test.cpp\033[0m +\033[0;36mBuilding build/tests/argparse.o from src/argparse.cpp\033[0m +\033[0;36mBuilding build/tests/argparse_test.o from tests/unit/argparse_test.cpp\033[0m +\033[0;36mBuilding build/tests/barcodes_test.o from tests/unit/barcodes_test.cpp\033[0m +\033[0;36mBuilding build/tests/barcode_table.o from src/barcode_table.cpp\033[0m +\033[0;36mBuilding build/tests/fastq.o from src/fastq.cpp\033[0m +\033[0;36mBuilding build/tests/fastq_test.o from tests/unit/fastq_test.cpp\033[0m +\033[0;36mBuilding build/tests/fastq_enc.o from src/fastq_enc.cpp\033[0m +\033[0;36mBuilding build/tests/fastq_enc_test.o from tests/unit/fastq_enc_test.cpp\033[0m +\033[0;36mBuilding build/tests/strutils.o from src/strutils.cpp\033[0m +\033[0;36mBuilding build/tests/strutils_test.o from tests/unit/strutils_test.cpp\033[0m +\033[0;32mLinking executable build/tests/main\033[0m +\033[0;32mRunning unit tests\033[0m =============================================================================== All tests passed (827 assertions in 268 test cases) @@ -414,38 +450,38 @@ make[2]: Entering directory '/build/reproducible-path/adapterremoval-2.3.3' Building AdapterRemoval with coverage instrumentation: no Building AdapterRemoval with debug information: no -Cleaning tests ... -removed 'build/tests/barcodes_test.deps' +\033[0;32mCleaning tests ...\033[0m +removed 'build/tests/fastq_enc.o' +removed 'build/tests/alignment_test.deps' +removed 'build/tests/argparse_test.deps' +removed 'build/tests/strutils.deps' +removed 'build/tests/alignment_tables.o' +removed 'build/tests/fastq_enc.deps' removed 'build/tests/fastq_test.o' +removed 'build/tests/fastq.o' +removed 'build/tests/main_test.o' +removed 'build/tests/strutils_test.o' removed 'build/tests/alignment.deps' -removed 'build/tests/fastq_enc.o' -removed 'build/tests/barcode_table.o' -removed 'build/tests/debug.o' -removed 'build/tests/fastq_test.deps' +removed 'build/tests/barcodes_test.deps' +removed 'build/tests/strutils.o' +removed 'build/tests/main' removed 'build/tests/alignment.o' -removed 'build/tests/strutils_test.o' -removed 'build/tests/fastq.o' -removed 'build/tests/argparse_test.o' +removed 'build/tests/debug.o' removed 'build/tests/barcodes_test.o' -removed 'build/tests/strutils_test.deps' -removed 'build/tests/main_test.deps' -removed 'build/tests/debug.deps' -removed 'build/tests/fastq_enc.deps' -removed 'build/tests/strutils.deps' -removed 'build/tests/fastq_enc_test.o' -removed 'build/tests/argparse.deps' -removed 'build/tests/fastq_enc_test.deps' removed 'build/tests/argparse.o' -removed 'build/tests/main' removed 'build/tests/alignment_test.o' +removed 'build/tests/argparse.deps' +removed 'build/tests/argparse_test.o' +removed 'build/tests/alignment_tables.deps' +removed 'build/tests/fastq_enc_test.o' removed 'build/tests/barcode_table.deps' -removed 'build/tests/strutils.o' -removed 'build/tests/argparse_test.deps' -removed 'build/tests/main_test.o' -removed 'build/tests/alignment_tables.o' -removed 'build/tests/alignment_test.deps' +removed 'build/tests/barcode_table.o' +removed 'build/tests/fastq_enc_test.deps' +removed 'build/tests/strutils_test.deps' +removed 'build/tests/fastq_test.deps' removed 'build/tests/fastq.deps' -removed 'build/tests/alignment_tables.deps' +removed 'build/tests/debug.deps' +removed 'build/tests/main_test.deps' removed directory 'build/tests' make[2]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.3' make[1]: Leaving directory '/build/reproducible-path/adapterremoval-2.3.3' @@ -487,8 +523,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'adapterremoval' in '../adapterremoval_2.3.3-2_armhf.deb'. dpkg-deb: building package 'adapterremoval-dbgsym' in '../adapterremoval-dbgsym_2.3.3-2_armhf.deb'. +dpkg-deb: building package 'adapterremoval' in '../adapterremoval_2.3.3-2_armhf.deb'. dpkg-deb: building package 'adapterremoval-examples' in '../adapterremoval-examples_2.3.3-2_all.deb'. dpkg-genbuildinfo --build=binary -O../adapterremoval_2.3.3-2_armhf.buildinfo dpkg-genchanges --build=binary -O../adapterremoval_2.3.3-2_armhf.changes @@ -497,12 +533,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/12851/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12851/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/26214 and its subdirectories -I: Current time: Thu Apr 11 06:39:37 -12 2024 -I: pbuilder-time-stamp: 1712860777 +I: removing directory /srv/workspace/pbuilder/12851 and its subdirectories +I: Current time: Fri Apr 12 08:56:30 +14 2024 +I: pbuilder-time-stamp: 1712861790