Diff of the two buildlogs: -- --- b1/build.log 2024-05-10 11:22:56.102896589 +0000 +++ b2/build.log 2024-05-10 11:24:06.323905364 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 9 23:21:54 -12 2024 -I: pbuilder-time-stamp: 1715340114 +I: Current time: Fri Jun 13 07:46:00 +14 2025 +I: pbuilder-time-stamp: 1749750360 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying use-archive-xopen.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/361456/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3228464/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 12 17:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3228464/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3228464/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='059deb38684640da87cb88fe2db64e33' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='361456' - PS1='# ' - PS2='> ' + INVOCATION_ID=31f2505d237b496e82d506b66cd198d4 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3228464 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RCLYZv1W/pbuilderrc_fL6t --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RCLYZv1W/b1 --logfile b1/build.log vcfanno_0.3.5+ds-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RCLYZv1W/pbuilderrc_g4vC --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RCLYZv1W/b2 --logfile b2/build.log vcfanno_0.3.5+ds-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 8 11:23 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/361456/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 9 17:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3228464/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -220,7 +252,7 @@ Get: 83 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.4+20240414-1 [95.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 samtools arm64 1.19.2-1+b1 [617 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 tabix arm64 1.19+ds-1.1+b1 [445 kB] -Fetched 110 MB in 1s (105 MB/s) +Fetched 110 MB in 1s (203 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) @@ -575,7 +607,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-2_source.changes +I: user script /srv/workspace/pbuilder/3228464/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3228464/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-2_source.changes dpkg-buildpackage: info: source package vcfanno dpkg-buildpackage: info: source version 0.3.5+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -599,39 +635,39 @@ dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang cd obj-aarch64-linux-gnu && go install -trimpath -v -p 12 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared +internal/coverage/rtcov +internal/goarch encoding -unicode/utf8 +internal/unsafeheader +internal/goexperiment +math/bits +internal/goos +internal/cpu internal/godebugs +internal/itoa +unicode/utf8 runtime/internal/syscall -internal/cpu -internal/goexperiment -internal/unsafeheader internal/race +internal/chacha8rand +internal/abi +runtime/internal/math +runtime/internal/sys sync/atomic -internal/goos -internal/goarch -internal/coverage/rtcov -internal/itoa -math/bits unicode cmp -runtime/internal/math -internal/chacha8rand -runtime/internal/sys -unicode/utf16 -internal/abi log/internal +unicode/utf16 container/list crypto/internal/alias -crypto/subtle math -crypto/internal/boring/sig slices +crypto/subtle +crypto/internal/boring/sig vendor/golang.org/x/crypto/cryptobyte/asn1 -internal/nettrace vendor/golang.org/x/crypto/internal/alias -runtime/internal/atomic +internal/nettrace internal/bytealg +runtime/internal/atomic runtime internal/reflectlite sync @@ -639,27 +675,27 @@ internal/bisect internal/singleflight runtime/cgo -errors sort +errors +internal/godebug strconv container/heap -internal/godebug path -vendor/golang.org/x/net/dns/dnsmessage -internal/safefilepath -crypto/internal/nistec/fiat -io internal/oserror -reflect internal/intern +vendor/golang.org/x/net/dns/dnsmessage math/rand -crypto/rc4 +internal/safefilepath +io +crypto/internal/nistec/fiat syscall strings hash bytes crypto/internal/randutil +crypto/rc4 net/netip +reflect hash/crc32 crypto vendor/golang.org/x/text/transform @@ -667,86 +703,86 @@ github.com/brentp/irelate/interfaces regexp/syntax net/http/internal/ascii -regexp +internal/syscall/execenv internal/syscall/unix time -internal/syscall/execenv +regexp +internal/poll +context +io/fs +github.com/BurntSushi/toml/internal internal/fmtsort encoding/binary +embed +os encoding/base64 -crypto/internal/edwards25519/field +crypto/cipher crypto/md5 +crypto/internal/edwards25519/field vendor/golang.org/x/crypto/internal/poly1305 -crypto/cipher -internal/poll -io/fs -github.com/BurntSushi/toml/internal -context +crypto/internal/nistec encoding/pem -embed +crypto/internal/edwards25519 +crypto/internal/boring crypto/des vendor/golang.org/x/crypto/chacha20 -crypto/internal/boring -crypto/internal/edwards25519 -crypto/aes crypto/hmac crypto/sha512 crypto/sha1 +crypto/aes crypto/sha256 -crypto/internal/nistec vendor/golang.org/x/crypto/hkdf vendor/golang.org/x/crypto/chacha20poly1305 -os crypto/ecdh -fmt io/ioutil +fmt path/filepath net os/exec flag encoding/hex -net/url -log -encoding/csv -github.com/pkg/errors compress/flate +net/url encoding/json -github.com/yuin/gopher-lua/pm +encoding/csv +log github.com/yuin/gopher-lua/ast +github.com/yuin/gopher-lua/pm +github.com/pkg/errors math/big vendor/golang.org/x/text/unicode/norm vendor/golang.org/x/net/http2/hpack mime +github.com/yuin/gopher-lua/parse github.com/brentp/vcfgo vendor/golang.org/x/text/unicode/bidi -github.com/yuin/gopher-lua/parse mime/quotedprintable net/http/internal os/user compress/gzip github.com/klauspost/compress/flate -vendor/golang.org/x/text/secure/bidirule github.com/biogo/hts/bgzf +vendor/golang.org/x/text/secure/bidirule github.com/yuin/gopher-lua -github.com/BurntSushi/toml -vendor/golang.org/x/net/idna github.com/biogo/hts/bgzf/index github.com/biogo/hts/csi github.com/biogo/hts/internal +github.com/BurntSushi/toml +vendor/golang.org/x/net/idna +github.com/biogo/hts/tabix +github.com/biogo/hts/sam crypto/rand crypto/elliptic crypto/internal/bigmod crypto/internal/boring/bbig encoding/asn1 -github.com/biogo/hts/tabix -github.com/biogo/hts/sam -crypto/ed25519 crypto/dsa +crypto/ed25519 crypto/rsa -github.com/klauspost/pgzip vendor/golang.org/x/crypto/cryptobyte crypto/x509/pkix github.com/biogo/hts/bam +github.com/klauspost/pgzip crypto/ecdsa github.com/brentp/irelate/parsers github.com/brentp/bix @@ -754,9 +790,9 @@ github.com/yuin/gluare github.com/brentp/goluaez github.com/brentp/vcfanno/api -vendor/golang.org/x/net/http/httpproxy -net/textproto crypto/x509 +net/textproto +vendor/golang.org/x/net/http/httpproxy vendor/golang.org/x/net/http/httpguts mime/multipart crypto/tls @@ -770,10 +806,10 @@ ? github.com/brentp/vcfanno/shared [no test files] testing: warning: no tests to run PASS -ok github.com/brentp/vcfanno 0.016s [no tests to run] +ok github.com/brentp/vcfanno 0.015s [no tests to run] === RUN Test OK: 13 passed ---- PASS: Test (0.03s) +--- PASS: Test (0.02s) === RUN TestHandleA --- PASS: TestHandleA (0.00s) === RUN TestHandlAMulti @@ -781,7 +817,7 @@ === RUN TestByAlt --- PASS: TestByAlt (0.00s) PASS -ok github.com/brentp/vcfanno/api 0.041s +ok github.com/brentp/vcfanno/api 0.029s create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang @@ -898,9 +934,9 @@ dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--buildsystem=golang dh_builddeb -O--buildsystem=golang -dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-2_arm64.deb'. dpkg-deb: building package 'vcfanno-dbgsym' in '../vcfanno-dbgsym_0.3.5+ds-2_arm64.deb'. dpkg-deb: building package 'vcfanno-examples' in '../vcfanno-examples_0.3.5+ds-2_all.deb'. +dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../vcfanno_0.3.5+ds-2_arm64.buildinfo dpkg-genchanges --build=binary -O../vcfanno_0.3.5+ds-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -908,12 +944,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3228464/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3228464/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/361456 and its subdirectories -I: Current time: Thu May 9 23:22:54 -12 2024 -I: pbuilder-time-stamp: 1715340174 +I: removing directory /srv/workspace/pbuilder/3228464 and its subdirectories +I: Current time: Fri Jun 13 07:47:04 +14 2025 +I: pbuilder-time-stamp: 1749750424