Diff of the two buildlogs: -- --- b1/build.log 2024-05-13 14:13:27.074887840 +0000 +++ b2/build.log 2024-05-13 14:31:04.093917824 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 15 08:30:43 -12 2025 -I: pbuilder-time-stamp: 1750019443 +I: Current time: Mon Jun 16 10:36:30 +14 2025 +I: pbuilder-time-stamp: 1750019790 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1950830/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1415609/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 15 20:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1415609/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1415609/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='512c187ee52345648a93d38845ead439' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1950830' - PS1='# ' - PS2='> ' + INVOCATION_ID=3c9049b5e9a84096843c4f6fe0ebb243 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1415609 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.x4ewUR1G/pbuilderrc_q8fX --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.x4ewUR1G/b1 --logfile b1/build.log seqan-needle_1.0.2+ds-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.x4ewUR1G/pbuilderrc_qodp --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.x4ewUR1G/b2 --logfile b2/build.log seqan-needle_1.0.2+ds-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 13 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1950830/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 15 17:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1415609/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -197,7 +229,7 @@ Get: 71 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-1+b2 [29.3 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-1+b2 [26.2 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-1+b2 [14.0 kB] -Fetched 84.9 MB in 1s (142 MB/s) +Fetched 84.9 MB in 1s (81.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) @@ -504,7 +536,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqan-needle-1.0.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.2+ds-2_source.changes +I: user script /srv/workspace/pbuilder/1415609/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1415609/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqan-needle-1.0.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-needle_1.0.2+ds-2_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.2+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -542,7 +578,7 @@ -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- You can run `make test` to build and run tests. --- Configuring done (7.2s) +-- Configuring done (15.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -787,8 +823,8 @@ Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile api_test gmake[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/test' -gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/rule +gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.2+ds -B/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/CMakeFiles 15 @@ -902,8 +938,8 @@ Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile cli_test gmake[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/test' -gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule +gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.2+ds -B/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/CMakeFiles 70 @@ -1350,12 +1386,12 @@ 1: [----------] Global test environment set-up. 1: [----------] 3 tests from count 1: [ RUN ] count.small_example -1: [ OK ] count.small_example (2 ms) +1: [ OK ] count.small_example (13 ms) 1: [ RUN ] count.small_example_paired 1: [ OK ] count.small_example_paired (1 ms) 1: [ RUN ] count.small_example_exclude 1: [ OK ] count.small_example_exclude (0 ms) -1: [----------] 3 tests from count (4 ms total) +1: [----------] 3 tests from count (14 ms total) 1: 1: [----------] 1 test from genome 1: [ RUN ] genome.small_example @@ -1363,52 +1399,52 @@ 1: [----------] 1 test from genome (0 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 4 tests from 2 test suites ran. (4 ms total) +1: [==========] 4 tests from 2 test suites ran. (14 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete 2: [ RUN ] delete.no_given_thresholds -2: [ OK ] delete.no_given_thresholds (2 ms) -2: [----------] 1 test from delete (2 ms total) +2: [ OK ] delete.no_given_thresholds (5 ms) +2: [----------] 1 test from delete (5 ms total) 2: 2: [----------] 8 tests from insert 2: [ RUN ] insert.ibf -2: [ OK ] insert.ibf (1 ms) +2: [ OK ] insert.ibf (0 ms) 2: [ RUN ] insert.ibf_no_given_thresholds 2: [ OK ] insert.ibf_no_given_thresholds (0 ms) 2: [ RUN ] insert.ibf_delete -2: [ OK ] insert.ibf_delete (1 ms) +2: [ OK ] insert.ibf_delete (0 ms) 2: [ RUN ] insert.ibf_delete_no_given_threshold -2: [ OK ] insert.ibf_delete_no_given_threshold (2 ms) +2: [ OK ] insert.ibf_delete_no_given_threshold (0 ms) 2: [ RUN ] insert.ibfmin -2: [ OK ] insert.ibfmin (1 ms) +2: [ OK ] insert.ibfmin (0 ms) 2: [ RUN ] insert.ibfmin_delete 2: [ OK ] insert.ibfmin_delete (0 ms) 2: [ RUN ] insert.ibfmin_no_given_thresholds 2: [ OK ] insert.ibfmin_no_given_thresholds (0 ms) 2: [ RUN ] insert.delete_ibfmin_no_given_thresholds 2: [ OK ] insert.delete_ibfmin_no_given_thresholds (0 ms) -2: [----------] 8 tests from insert (9 ms total) +2: [----------] 8 tests from insert (3 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 9 tests from 2 test suites ran. (13 ms total) +2: [==========] 9 tests from 2 test suites ran. (8 ms total) 2: [ PASSED ] 9 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate 3: [ RUN ] estimate.small_example -3: [ OK ] estimate.small_example (2 ms) +3: [ OK ] estimate.small_example (5 ms) 3: [ RUN ] estimate.small_example_uncompressed 3: [ OK ] estimate.small_example_uncompressed (0 ms) 3: [ RUN ] estimate.small_example_gene_not_found -3: [ OK ] estimate.small_example_gene_not_found (1 ms) +3: [ OK ] estimate.small_example_gene_not_found (0 ms) 3: [ RUN ] estimate.small_example_different_expressions_per_level -3: [ OK ] estimate.small_example_different_expressions_per_level (1 ms) +3: [ OK ] estimate.small_example_different_expressions_per_level (0 ms) 3: [ RUN ] estimate.small_example_different_expressions_per_level_normalization_1 -3: [ OK ] estimate.small_example_different_expressions_per_level_normalization_1 (1 ms) +3: [ OK ] estimate.small_example_different_expressions_per_level_normalization_1 (0 ms) 3: [ RUN ] estimate.small_example_different_expressions_per_level_normalization_1_uncompressed 3: [ OK ] estimate.small_example_different_expressions_per_level_normalization_1_uncompressed (0 ms) 3: [ RUN ] estimate.example @@ -1417,9 +1453,9 @@ 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf 4: [ RUN ] ibf.given_expression_thresholds -4: [ OK ] ibf.given_expression_thresholds (1 ms) +4: [ OK ] ibf.given_expression_thresholds (3 ms) 4: [ RUN ] ibf.given_expression_thresholds_include_file -4: [ OK ] ibf.given_expression_thresholds_include_file (1 ms) +4: [ OK ] ibf.given_expression_thresholds_include_file (0 ms) 4: [ RUN ] ibf.given_expression_thresholds_exclude_file 4: [ OK ] ibf.given_expression_thresholds_exclude_file (0 ms) 4: [ RUN ] ibf.no_given_expression_thresholds @@ -1436,24 +1472,24 @@ 5: [----------] Global test environment set-up. 5: [----------] 4 tests from ibfmin 5: [ RUN ] ibfmin.given_expression_thresholds -5: [ OK ] ibfmin.given_expression_thresholds (0 ms) +5: [ OK ] ibfmin.given_expression_thresholds (8 ms) 5: [ RUN ] ibfmin.no_given_expression_thresholds 5: [ OK ] ibfmin.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin.expression_thresholds_by_genome -5: [ OK ] ibfmin.expression_thresholds_by_genome (1 ms) +5: [ OK ] ibfmin.expression_thresholds_by_genome (0 ms) 5: [ RUN ] ibfmin.different_shape 5: [ OK ] ibfmin.different_shape (0 ms) -5: [----------] 4 tests from ibfmin (3 ms total) +5: [----------] 4 tests from ibfmin (10 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 4 tests from 1 test suite ran. (3 ms total) +5: [==========] 4 tests from 1 test suite ran. (10 ms total) 5: [ PASSED ] 4 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser 6: [ RUN ] minimiser.small_example -6: [ OK ] minimiser.small_example (2 ms) +6: [ OK ] minimiser.small_example (1 ms) 6: [ RUN ] minimiser.small_example_different_shape 6: [ OK ] minimiser.small_example_different_shape (0 ms) 6: [ RUN ] minimiser.small_example_samplewise @@ -1461,219 +1497,219 @@ 6: [ RUN ] minimiser.cutoff_by_filesize 6: [ OK ] minimiser.cutoff_by_filesize (0 ms) 6: [ RUN ] minimiser.small_example_two_threads -6: [ OK ] minimiser.small_example_two_threads (2 ms) +6: [ OK ] minimiser.small_example_two_threads (11 ms) 6: [ RUN ] minimiser.small_example_include 6: [ OK ] minimiser.small_example_include (0 ms) 6: [ RUN ] minimiser.small_example_exclude 6: [ OK ] minimiser.small_example_exclude (0 ms) 6: [ RUN ] minimiser.small_example_shape 6: [ OK ] minimiser.small_example_shape (0 ms) -6: [----------] 8 tests from minimiser (7 ms total) +6: [----------] 8 tests from minimiser (14 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 8 tests from 1 test suite ran. (7 ms total) +6: [==========] 8 tests from 1 test suite ran. (14 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options -7: [ OK ] needle_options_test.no_options (6 ms) +7: [ OK ] needle_options_test.no_options (13 ms) 7: [ RUN ] needle_options_test.fail_no_argument -7: [ OK ] needle_options_test.fail_no_argument (10 ms) -7: [----------] 2 tests from needle_options_test (17 ms total) +7: [ OK ] needle_options_test.fail_no_argument (16 ms) +7: [----------] 2 tests from needle_options_test (29 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 2 tests from 1 test suite ran. (17 ms total) +7: [==========] 2 tests from 1 test suite ran. (29 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options -8: [ OK ] ibf_options_test.ibf_no_options (5 ms) +8: [ OK ] ibf_options_test.ibf_no_options (12 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument -8: [ OK ] ibf_options_test.ibf_fail_no_argument (7 ms) +8: [ OK ] ibf_options_test.ibf_fail_no_argument (24 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction -8: [ OK ] ibf_options_test.ibf_fail_contradiction (7 ms) +8: [ OK ] ibf_options_test.ibf_fail_contradiction (23 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 -8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (7 ms) -8: [ RUN ] ibf_options_test.ibf_fail_no_fpr 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options -9: [ OK ] insert_options_test.insert_no_options (7 ms) +9: [ OK ] insert_options_test.insert_no_options (32 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument -9: [ OK ] insert_options_test.insert_fail_no_argument (7 ms) +9: [ OK ] insert_options_test.insert_fail_no_argument (11 ms) 9: [ RUN ] insert_options_test.with_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options -10: [ OK ] minimiser_options_test.no_options (6 ms) -10: [ RUN ] minimiser_options_test.fail_no_argument -10: [ OK ] minimiser_options_test.fail_no_argument (6 ms) -10: [ RUN ] minimiser_options_test.with_arguments 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options - 1/13 Test #1: test/api/count_test ............... Passed 0.06 sec - 2/13 Test #2: test/api/insert_delete_test ....... Passed 0.06 sec - 3/13 Test #5: test/api/ibfmin_test .............. Passed 0.05 sec - 4/13 Test #6: test/api/minimiser_test ........... Passed 0.04 sec - 5/13 Test #7: test/cli/needle_options_test ...... Passed 0.04 sec +12: Running main() from ./googletest/src/gtest_main.cc +12: [==========] Running 8 tests from 2 test suites. +12: [----------] Global test environment set-up. +12: [----------] 5 tests from count_options_test +12: [ RUN ] count_options_test.no_options + 1/13 Test #1: test/api/count_test ............... Passed 0.20 sec + 2/13 Test #2: test/api/insert_delete_test ....... Passed 0.18 sec + 3/13 Test #5: test/api/ibfmin_test .............. Passed 0.14 sec + 4/13 Test #6: test/api/minimiser_test ........... Passed 0.13 sec + 5/13 Test #7: test/cli/needle_options_test ...... Passed 0.10 sec test 13 Start 13: test/cli/delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/test/cli/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 -8: [ OK ] ibf_options_test.ibf_fail_no_fpr (7 ms) -8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs -8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (5 ms) -8: [ RUN ] ibf_options_test.ibf_with_argument -10: [ OK ] minimiser_options_test.with_arguments (28 ms) -10: [ RUN ] minimiser_options_test.cutoff -11: [ OK ] estimate_options_test.no_options (15 ms) +8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (19 ms) +8: [ RUN ] ibf_options_test.ibf_fail_no_fpr +10: [ OK ] minimiser_options_test.no_options (45 ms) +10: [ RUN ] minimiser_options_test.fail_no_argument +11: [ OK ] estimate_options_test.no_options (45 ms) 11: [ RUN ] estimate_options_test.fail_no_argument -11: [ OK ] estimate_options_test.fail_no_argument (6 ms) -11: [ RUN ] estimate_options_test.with_argument -12: Running main() from ./googletest/src/gtest_main.cc -12: [==========] Running 8 tests from 2 test suites. -12: [----------] Global test environment set-up. -12: [----------] 5 tests from count_options_test -12: [ RUN ] count_options_test.no_options -12: [ OK ] count_options_test.no_options (8 ms) +12: [ OK ] count_options_test.no_options (26 ms) 12: [ RUN ] count_options_test.fail_no_argument -12: [ OK ] count_options_test.fail_no_argument (7 ms) -12: [ RUN ] count_options_test.with_arguments 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options -12: [ OK ] count_options_test.with_arguments (11 ms) -12: [ RUN ] count_options_test.multithreads -13: [ OK ] delete_options_test.delete_no_options (9 ms) +10: [ OK ] minimiser_options_test.fail_no_argument (32 ms) +10: [ RUN ] minimiser_options_test.with_arguments +12: [ OK ] count_options_test.fail_no_argument (20 ms) +12: [ RUN ] count_options_test.with_arguments +8: [ OK ] ibf_options_test.ibf_fail_no_fpr (27 ms) +8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs +11: [ OK ] estimate_options_test.fail_no_argument (27 ms) +11: [ RUN ] estimate_options_test.with_argument +13: [ OK ] delete_options_test.delete_no_options (33 ms) 13: [ RUN ] delete_options_test.with_argument -12: [ OK ] count_options_test.multithreads (10 ms) +10: [ OK ] minimiser_options_test.with_arguments (34 ms) +10: [ RUN ] minimiser_options_test.cutoff +12: [ OK ] count_options_test.with_arguments (35 ms) +12: [ RUN ] count_options_test.multithreads +8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (40 ms) +8: [ RUN ] ibf_options_test.ibf_with_argument +12: [ OK ] count_options_test.multithreads (21 ms) 12: [ RUN ] count_options_test.paired -12: [ OK ] count_options_test.paired (13 ms) -12: [----------] 5 tests from count_options_test (51 ms total) +10: [ OK ] minimiser_options_test.cutoff (27 ms) +10: [ RUN ] minimiser_options_test.multiple_sample +12: [ OK ] count_options_test.paired (23 ms) +12: [----------] 5 tests from count_options_test (127 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options -10: [ OK ] minimiser_options_test.cutoff (31 ms) -10: [ RUN ] minimiser_options_test.multiple_sample -12: [ OK ] genome_options_test.no_options (8 ms) +10: [ OK ] minimiser_options_test.multiple_sample (24 ms) +10: [ RUN ] minimiser_options_test.multithreads +12: [ OK ] genome_options_test.no_options (16 ms) 12: [ RUN ] genome_options_test.fail_no_argument -12: [ OK ] genome_options_test.fail_no_argument (9 ms) +12: [ OK ] genome_options_test.fail_no_argument (17 ms) 12: [ RUN ] genome_options_test.with_arguments -10: [ OK ] minimiser_options_test.multiple_sample (27 ms) -10: [ RUN ] minimiser_options_test.multithreads -12: [ OK ] genome_options_test.with_arguments (23 ms) -12: [----------] 3 tests from genome_options_test (41 ms total) +12: [ OK ] genome_options_test.with_arguments (16 ms) +12: [----------] 3 tests from genome_options_test (51 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 8 tests from 2 test suites ran. (92 ms total) +12: [==========] 8 tests from 2 test suites ran. (178 ms total) 12: [ PASSED ] 8 tests. - 6/13 Test #12: test/cli/count_options_test ....... Passed 0.10 sec -10: [ OK ] minimiser_options_test.multithreads (11 ms) + 6/13 Test #12: test/cli/count_options_test ....... Passed 0.20 sec +10: [ OK ] minimiser_options_test.multithreads (53 ms) 10: [ RUN ] minimiser_options_test.paired -10: [ OK ] minimiser_options_test.paired (29 ms) +10: [ OK ] minimiser_options_test.paired (19 ms) 10: [ RUN ] minimiser_options_test.invalid_argument -10: [ OK ] minimiser_options_test.invalid_argument (4 ms) -10: [----------] 8 tests from minimiser_options_test (147 ms total) +10: [ OK ] minimiser_options_test.invalid_argument (20 ms) +10: [----------] 8 tests from minimiser_options_test (257 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 8 tests from 1 test suite ran. (147 ms total) +10: [==========] 8 tests from 1 test suite ran. (257 ms total) 10: [ PASSED ] 8 tests. - 7/13 Test #10: test/cli/minimiser_options_test ... Passed 0.15 sec -4: [ OK ] ibf.different_file_sizes (1280 ms) -4: [----------] 8 tests from ibf (1285 ms total) + 7/13 Test #10: test/cli/minimiser_options_test ... Passed 0.27 sec +4: [ OK ] ibf.different_file_sizes (4238 ms) +4: [----------] 8 tests from ibf (4243 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 8 tests from 1 test suite ran. (1286 ms total) +4: [==========] 8 tests from 1 test suite ran. (4243 ms total) 4: [ PASSED ] 8 tests. - 8/13 Test #4: test/api/ibf_test ................. Passed 1.29 sec -8: [ OK ] ibf_options_test.ibf_with_argument (1407 ms) -8: [ RUN ] ibf_options_test.ibf_with_argument_with_options -3: [ OK ] estimate.example (2164 ms) + 8/13 Test #4: test/api/ibf_test ................. Passed 4.25 sec +3: [ OK ] estimate.example (5037 ms) 3: [ RUN ] estimate.example_multiple_threads -11: [ OK ] estimate_options_test.with_argument (2485 ms) -11: [ RUN ] estimate_options_test.with_argument_normalization_method -9: [ OK ] insert_options_test.with_argument (2546 ms) -9: [----------] 3 tests from insert_options_test (2561 ms total) +8: [ OK ] ibf_options_test.ibf_with_argument (5023 ms) +8: [ RUN ] ibf_options_test.ibf_with_argument_with_options +9: [ OK ] insert_options_test.with_argument (6564 ms) +9: [----------] 3 tests from insert_options_test (6608 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 3 tests from 1 test suite ran. (2561 ms total) +9: [==========] 3 tests from 1 test suite ran. (6608 ms total) 9: [ PASSED ] 3 tests. - 9/13 Test #9: test/cli/insert_options_test ...... Passed 2.57 sec -8: [ OK ] ibf_options_test.ibf_with_argument_with_options (1191 ms) + 9/13 Test #9: test/cli/insert_options_test ...... Passed 6.63 sec +11: [ OK ] estimate_options_test.with_argument (7223 ms) +11: [ RUN ] estimate_options_test.with_argument_normalization_method +8: [ OK ] ibf_options_test.ibf_with_argument_with_options (3651 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape -8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (1180 ms) +3: [ OK ] estimate.example_multiple_threads (6299 ms) +3: [ RUN ] estimate.example_different_expressions_per_level +8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (4269 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options -8: [ OK ] ibf_options_test.ibfmin_no_options (5 ms) +8: [ OK ] ibf_options_test.ibfmin_no_options (14 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument -8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (5 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (8 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction -8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (6 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (20 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 -8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (6 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (19 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr -8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (6 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (20 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs -8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (6 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (36 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument -8: [ OK ] ibf_options_test.ibfmin_with_argument (7 ms) +8: [ OK ] ibf_options_test.ibfmin_with_argument (15 ms) 8: [ RUN ] ibf_options_test.compressed -8: [ OK ] ibf_options_test.compressed (6 ms) +8: [ OK ] ibf_options_test.compressed (28 ms) 8: [ RUN ] ibf_options_test.more_hash_functions -8: [ OK ] ibf_options_test.more_hash_functions (6 ms) +8: [ OK ] ibf_options_test.more_hash_functions (19 ms) 8: [ RUN ] ibf_options_test.expression_thresholds -8: [ OK ] ibf_options_test.expression_thresholds (6 ms) -8: [----------] 19 tests from ibf_options_test (3885 ms total) +8: [ OK ] ibf_options_test.expression_thresholds (24 ms) +8: [----------] 19 tests from ibf_options_test (13300 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 19 tests from 1 test suite ran. (3885 ms total) +8: [==========] 19 tests from 1 test suite ran. (13300 ms total) 8: [ PASSED ] 19 tests. -10/13 Test #8: test/cli/ibf_options_test ......... Passed 3.90 sec -3: [ OK ] estimate.example_multiple_threads (1819 ms) -3: [ RUN ] estimate.example_different_expressions_per_level -13: [ OK ] delete_options_test.with_argument (3986 ms) -13: [----------] 2 tests from delete_options_test (3995 ms total) +10/13 Test #8: test/cli/ibf_options_test ......... Passed 13.31 sec +3: [ OK ] estimate.example_different_expressions_per_level (2942 ms) +3: [ RUN ] estimate.example_different_expressions_per_level_multiple_threads +11: [ OK ] estimate_options_test.with_argument_normalization_method (7611 ms) +11: [ RUN ] estimate_options_test.with_argument_out +13: [ OK ] delete_options_test.with_argument (14827 ms) +13: [----------] 2 tests from delete_options_test (14861 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 2 tests from 1 test suite ran. (3995 ms total) +13: [==========] 2 tests from 1 test suite ran. (14861 ms total) 13: [ PASSED ] 2 tests. -11/13 Test #13: test/cli/delete_options_test ...... Passed 4.02 sec -11: [ OK ] estimate_options_test.with_argument_normalization_method (1948 ms) -11: [ RUN ] estimate_options_test.with_argument_out -3: [ OK ] estimate.example_different_expressions_per_level (984 ms) -3: [ RUN ] estimate.example_different_expressions_per_level_multiple_threads -3: [ OK ] estimate.example_different_expressions_per_level_multiple_threads (929 ms) -3: [----------] 10 tests from estimate (5907 ms total) +11/13 Test #13: test/cli/delete_options_test ...... Passed 14.89 sec +3: [ OK ] estimate.example_different_expressions_per_level_multiple_threads (2482 ms) +3: [----------] 10 tests from estimate (16770 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 10 tests from 1 test suite ran. (5907 ms total) +3: [==========] 10 tests from 1 test suite ran. (16770 ms total) 3: [ PASSED ] 10 tests. -12/13 Test #3: test/api/estimate_test ............ Passed 5.91 sec -11: [ OK ] estimate_options_test.with_argument_out (1865 ms) -11: [----------] 5 tests from estimate_options_test (6322 ms total) +12/13 Test #3: test/api/estimate_test ............ Passed 16.79 sec +11: [ OK ] estimate_options_test.with_argument_out (6791 ms) +11: [----------] 5 tests from estimate_options_test (21700 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 5 tests from 1 test suite ran. (6322 ms total) +11: [==========] 5 tests from 1 test suite ran. (21700 ms total) 11: [ PASSED ] 5 tests. -13/13 Test #11: test/cli/estimate_options_test .... Passed 6.33 sec +13/13 Test #11: test/cli/estimate_options_test .... Passed 21.72 sec 100% tests passed, 0 tests failed out of 13 -Total Test time (real) = 194.46 sec +Total Test time (real) = 647.03 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -1697,8 +1733,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.2+ds-2_arm64.deb'. -dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.2+ds-2_arm64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.2+ds-2_all.deb'. +dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.2+ds-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.2+ds-2_arm64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.2+ds-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1706,12 +1742,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1415609/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1415609/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1950830 and its subdirectories -I: Current time: Sun Jun 15 08:36:25 -12 2025 -I: pbuilder-time-stamp: 1750019785 +I: removing directory /srv/workspace/pbuilder/1415609 and its subdirectories +I: Current time: Mon Jun 16 10:54:02 +14 2025 +I: pbuilder-time-stamp: 1750020842