Diff of the two buildlogs: -- --- b1/build.log 2024-10-26 12:05:51.438677874 +0000 +++ b2/build.log 2024-10-26 12:08:52.932236232 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Oct 26 00:04:02 -12 2024 -I: pbuilder-time-stamp: 1729944242 +I: Current time: Sat Nov 29 08:29:01 +14 2025 +I: pbuilder-time-stamp: 1764354541 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying python2to3_for_executables.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2273494/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/868379/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 28 18:29 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/868379/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/868379/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='abb6b01d740145bfa1cc0eae1d5cd18f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2273494' - PS1='# ' - PS2='> ' + INVOCATION_ID=60c38c45d4864e1e8a4eced2afda8af4 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=868379 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dG4za4fT/pbuilderrc_ENg5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dG4za4fT/b1 --logfile b1/build.log python-deeptools_3.5.5+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dG4za4fT/pbuilderrc_Q2Wo --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dG4za4fT/b2 --logfile b2/build.log python-deeptools_3.5.5+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2273494/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/868379/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -345,7 +377,7 @@ Get: 205 http://deb.debian.org/debian trixie/main arm64 python3-pybigwig arm64 0.3.22+dfsg-2 [42.9 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.22.1+ds-2+b1 [3244 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.3-1 [249 kB] -Fetched 108 MB in 1s (149 MB/s) +Fetched 108 MB in 1s (99.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20055 files and directories currently installed.) @@ -1020,8 +1052,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Oct 26 12:04:33 UTC 2024. -Universal Time is now: Sat Oct 26 12:04:33 UTC 2024. +Local time is now: Fri Nov 28 18:30:08 UTC 2025. +Universal Time is now: Fri Nov 28 18:30:08 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1217,7 +1249,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-deeptools-3.5.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-deeptools_3.5.5+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/868379/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/868379/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-deeptools-3.5.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-deeptools_3.5.5+dfsg-1_source.changes dpkg-buildpackage: info: source package python-deeptools dpkg-buildpackage: info: source version 3.5.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1372,7 +1408,7 @@ Copying deepTools.egg-info to build/bdist.linux-aarch64/wheel/./deepTools-3.5.5.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/deepTools-3.5.5.dist-info/WHEEL -creating '/build/reproducible-path/python-deeptools-3.5.5+dfsg/.pybuild/cpython3_3.12_deeptools/.tmp-_co4c5mk/deepTools-3.5.5-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/python-deeptools-3.5.5+dfsg/.pybuild/cpython3_3.12_deeptools/.tmp-6dgjjb24/deepTools-3.5.5-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'deeptools/SES_scaleFactor.py' adding 'deeptools/__init__.py' adding 'deeptools/alignmentSieve.py' @@ -1536,8 +1572,8 @@ ../../../deeptools/test/test_writeBedGraph.py::TestWriteBedGraph::test_writeBedGraph_cigar[bam] PASSED [ 99%] ../../../deeptools/test/test_writeBedGraph.py::TestWriteBedGraph::test_writeBedGraph_cigar[cram] PASSED [100%] -======================== 99 passed, 1 skipped in 18.73s ======================== - rm -fr -- /tmp/dh-xdg-rundir-xEqUIsP5 +======================== 99 passed, 1 skipped in 23.97s ======================== + rm -fr -- /tmp/dh-xdg-rundir-onwSQVWr create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1594,7 +1630,7 @@ D: dh_python3 pydist:173: trying to find dependency for scipy>=0.17.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-numpydoc', 'python3-matplotlib', 'python3-plotly', 'python3-py2bit', 'python3:any', 'python3-scipy', 'python3-pybigwig', 'python3-pysam', 'python3-deeptoolsintervals', 'python3-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3-pybigwig', 'python3-py2bit', 'python3:any', 'python3-pysam', 'python3-scipy', 'python3-numpy', 'python3-matplotlib', 'python3-numpydoc', 'python3-plotly', 'python3-deeptoolsintervals'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -1641,12 +1677,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/868379/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/868379/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2273494 and its subdirectories -I: Current time: Sat Oct 26 00:05:50 -12 2024 -I: pbuilder-time-stamp: 1729944350 +I: removing directory /srv/workspace/pbuilder/868379 and its subdirectories +I: Current time: Sat Nov 29 08:31:51 +14 2025 +I: pbuilder-time-stamp: 1764354711