Diff of the two buildlogs: -- --- b1/build.log 2024-12-15 07:04:39.185953966 +0000 +++ b2/build.log 2024-12-15 07:06:53.335859469 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Dec 14 19:02:36 -12 2024 -I: pbuilder-time-stamp: 1734246156 +I: Current time: Sun Jan 18 03:27:41 +14 2026 +I: pbuilder-time-stamp: 1768656461 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1997026/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1649938/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 17 13:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1649938/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1649938/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='6ddd20a5a99b4d6185e3a51ef82e1bae' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1997026' - PS1='# ' - PS2='> ' + INVOCATION_ID=8249c7aac356439386d29f8b8784e191 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1649938 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eDNshFv7/pbuilderrc_9Rcx --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eDNshFv7/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-10.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eDNshFv7/pbuilderrc_rGm3 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eDNshFv7/b2 --logfile b2/build.log python-csb_1.2.5+dfsg-10.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1997026/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1649938/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -264,7 +296,7 @@ Get: 137 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3+b1 [5586 kB] -Fetched 89.9 MB in 0s (199 MB/s) +Fetched 89.9 MB in 0s (190 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20082 files and directories currently installed.) @@ -730,8 +762,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Dec 15 07:03:02 UTC 2024. -Universal Time is now: Sun Dec 15 07:03:02 UTC 2024. +Local time is now: Sat Jan 17 13:28:07 UTC 2026. +Universal Time is now: Sat Jan 17 13:28:07 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -854,7 +886,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes +I: user script /srv/workspace/pbuilder/1649938/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1649938/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-10 dpkg-buildpackage: info: source distribution unstable @@ -1274,7 +1310,7 @@ testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdxpa2slp' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjulgdwzn' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1395,27 +1431,27 @@ content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxri1a71t' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd83td3ge' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpx14scgcx' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsbps8ai3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuiu88tf7' mode='r' encoding='UTF-8'> +testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbw9g1q4c' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp99iph21e' mode='r' encoding='UTF-8'> +testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpy0f1xilh' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpaqzcfg0v' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj7k1nxhd' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzn8dabgl' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4x0gxzqb' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1427,11 +1463,11 @@ testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpa7mmaut4' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpauis3i2_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8gbgu8ya' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzmxtmhar' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1461,14 +1497,14 @@ testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpky1sotho' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmponjm13z6' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxxrxc2ee' mode='r' encoding='UTF-8'> +@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6p3ko3gv' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1651,10 +1687,10 @@ testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprbo7wfwd' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjwt_daak' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfqlla53f' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5wncc2y_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1670,10 +1706,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpn471_jlb' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpltq8xep5' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbh9pk63z' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp20fkdwiw' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1689,10 +1725,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpb7sl4k9x' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpg4b4ft6v' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnjx5lelx' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqoi2chpc' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1719,10 +1755,10 @@ testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzm0clbu4' mode='r' encoding='UTF-8'> +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph7zknr4w' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7fggxwhw' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6bnyoyc_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1831,10 +1867,10 @@ testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp013w5qp8' mode='r' encoding='UTF-8'> +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp71la2x7k' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpps2vohm6' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3xuag0wl' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1900,7 +1936,7 @@ testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4l23vnv7' mode='r' encoding='UTF-8'> +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_4idsu58' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1917,15 +1953,15 @@ testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3vxrr9xv' mode='r' encoding='UTF-8'> +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2gsk2g8t' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpa_r3pgc6' mode='r' encoding='UTF-8'> +testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpminyc8x0' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm7_ojh21' mode='r' encoding='UTF-8'> +testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqpmiawxe' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1941,7 +1977,7 @@ testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyj0ihw3n' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplcwfyk97' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1956,7 +1992,7 @@ testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_qh8swaf' mode='r' encoding='UTF-8'> +testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4tufoyta' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2189,7 +2225,7 @@ AssertionError: RuntimeError not raised ---------------------------------------------------------------------- -Ran 697 tests in 48.888s +Ran 697 tests in 49.111s FAILED (failures=2, errors=5, skipped=6) make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg' @@ -2785,12 +2821,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1649938/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1649938/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1997026 and its subdirectories -I: Current time: Sat Dec 14 19:04:37 -12 2024 -I: pbuilder-time-stamp: 1734246277 +I: removing directory /srv/workspace/pbuilder/1649938 and its subdirectories +I: Current time: Sun Jan 18 03:29:51 +14 2026 +I: pbuilder-time-stamp: 1768656591