Diff of the two buildlogs: -- --- b1/build.log 2024-05-05 16:53:36.633053451 +0000 +++ b2/build.log 2024-05-05 16:57:02.096309228 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jun 7 11:15:02 -12 2025 -I: pbuilder-time-stamp: 1749338102 +I: Current time: Sun Jun 8 13:16:39 +14 2025 +I: pbuilder-time-stamp: 1749338199 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying no-sphinx-sitemap.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3540701/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3496404/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 7 23:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3496404/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3496404/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='55631827e8b34d209691d2bdded4dbe1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3540701' - PS1='# ' - PS2='> ' + INVOCATION_ID=0004ca9bf6bb432680f5532e412e7b07 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3496404 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DLJ41QEL/pbuilderrc_1VRB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DLJ41QEL/b1 --logfile b1/build.log propka_3.5.1-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DLJ41QEL/pbuilderrc_RtHd --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DLJ41QEL/b2 --logfile b2/build.log propka_3.5.1-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 5 14:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3540701/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 7 17:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3496404/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -221,7 +253,7 @@ Get: 94 http://deb.debian.org/debian trixie/main arm64 sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1021 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 96 http://deb.debian.org/debian trixie/main arm64 python3-sphinx-rtd-theme all 2.0.0+dfsg-1 [28.3 kB] -Fetched 53.3 MB in 0s (121 MB/s) +Fetched 53.3 MB in 1s (76.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19735 files and directories currently installed.) @@ -540,8 +572,8 @@ Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Jun 7 23:15:22 UTC 2025. -Universal Time is now: Sat Jun 7 23:15:22 UTC 2025. +Local time is now: Sat Jun 7 23:17:21 UTC 2025. +Universal Time is now: Sat Jun 7 23:17:21 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -645,7 +677,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/propka-3.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../propka_3.5.1-1_source.changes +I: user script /srv/workspace/pbuilder/3496404/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3496404/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/propka-3.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../propka_3.5.1-1_source.changes dpkg-buildpackage: info: source package propka dpkg-buildpackage: info: source version 3.5.1-1 dpkg-buildpackage: info: source distribution unstable @@ -781,7 +817,7 @@ WARNING: html_static_path entry '_static' does not exist loading intersphinx inventory from https://docs.python.org/3/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) [autosummary] generating autosummary for: api.rst, changelog.rst, command.rst, index.rst, installation.rst, quickstart.rst, references.rst [autosummary] generating autosummary for: /build/reproducible-path/propka-3.5.1/docs/source/api/propka.atom.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.bonds.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.calculations.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.conformation_container.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.coupled_groups.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.determinant.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.determinants.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.energy.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.group.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.hybrid36.rst, ..., /build/reproducible-path/propka-3.5.1/docs/source/api/propka.lib.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.ligand.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.ligand_pka_values.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.molecular_container.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.output.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.parameters.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.protonate.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.run.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.vector_algebra.rst, /build/reproducible-path/propka-3.5.1/docs/source/api/propka.version.rst building [mo]: targets for 0 po files that are out of date @@ -811,7 +847,7 @@ WARNING: html_static_path entry '_static' does not exist loading intersphinx inventory from https://docs.python.org/3/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) [autosummary] generating autosummary for: api.rst, api/propka.atom.rst, api/propka.bonds.rst, api/propka.calculations.rst, api/propka.conformation_container.rst, api/propka.coupled_groups.rst, api/propka.determinant.rst, api/propka.determinants.rst, api/propka.energy.rst, api/propka.group.rst, ..., api/propka.protonate.rst, api/propka.run.rst, api/propka.vector_algebra.rst, api/propka.version.rst, changelog.rst, command.rst, index.rst, installation.rst, quickstart.rst, references.rst building [mo]: targets for 0 po files that are out of date writing output... @@ -844,7 +880,7 @@ tests/test_vector_algebra.py ............... [ 95%] tests/test_version.py .. [100%] -======================= 47 passed, 2 deselected in 6.27s ======================= +====================== 47 passed, 2 deselected in 12.51s ======================= I: pybuild base:311: cd /build/reproducible-path/propka-3.5.1/.pybuild/cpython3_3.11_propka/build; python3.11 -m pytest -k 'not test_molecular_container' ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 @@ -861,7 +897,7 @@ tests/test_vector_algebra.py ............... [ 95%] tests/test_version.py .. [100%] -======================= 47 passed, 2 deselected in 6.73s ======================= +====================== 47 passed, 2 deselected in 12.08s ======================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1205,8 +1241,8 @@ dpkg-gencontrol: warning: package python-propka-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python-propka-doc' in '../python-propka-doc_3.5.1-1_all.deb'. dpkg-deb: building package 'python3-propka' in '../python3-propka_3.5.1-1_all.deb'. +dpkg-deb: building package 'python-propka-doc' in '../python-propka-doc_3.5.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../propka_3.5.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../propka_3.5.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1215,12 +1251,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3496404/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3496404/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3540701 and its subdirectories -I: Current time: Sat Jun 7 11:16:35 -12 2025 -I: pbuilder-time-stamp: 1749338195 +I: removing directory /srv/workspace/pbuilder/3496404 and its subdirectories +I: Current time: Sun Jun 8 13:20:00 +14 2025 +I: pbuilder-time-stamp: 1749338400