Diff of the two buildlogs: -- --- b1/build.log 2024-04-27 17:54:52.576186808 +0000 +++ b2/build.log 2024-04-27 17:55:49.769747081 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 27 05:54:21 -12 2024 -I: pbuilder-time-stamp: 1714240461 +I: Current time: Sat May 31 14:17:54 +14 2025 +I: pbuilder-time-stamp: 1748650674 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: unpacking packmol_20.14.3-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/240142/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14565/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 31 00:18 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14565/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14565/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='a84a3a26803a4f4c954bf68c68da7df9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='240142' - PS1='# ' - PS2='> ' + INVOCATION_ID=dac4c09b8a434de8870e57d9013ced59 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14565 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iVdrs9R3/pbuilderrc_RURp --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iVdrs9R3/b1 --logfile b1/build.log packmol_20.14.3-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iVdrs9R3/pbuilderrc_LSCU --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iVdrs9R3/b2 --logfile b2/build.log packmol_20.14.3-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 21 07:15 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/240142/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 26 17:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/14565/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -203,7 +235,7 @@ Get: 53 http://deb.debian.org/debian trixie/main arm64 gfortran-13 arm64 13.2.0-23 [11.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7 [1288 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:13.2.0-7 [1428 B] -Fetched 45.3 MB in 0s (115 MB/s) +Fetched 45.3 MB in 0s (147 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). @@ -452,7 +484,11 @@ fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/packmol-20.14.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../packmol_20.14.3-1_source.changes +I: user script /srv/workspace/pbuilder/14565/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/14565/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/packmol-20.14.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../packmol_20.14.3-1_source.changes dpkg-buildpackage: info: source package packmol dpkg-buildpackage: info: source version 1:20.14.3-1 dpkg-buildpackage: info: source distribution unstable @@ -482,7 +518,7 @@ -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/f95 - skipped --- Configuring done (0.6s) +-- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -514,38 +550,28 @@ make[3]: Leaving directory '/build/reproducible-path/packmol-20.14.3/obj-aarch64-linux-gnu' make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/build make[3]: Entering directory '/build/reproducible-path/packmol-20.14.3/obj-aarch64-linux-gnu' -[ 2%] Building Fortran object CMakeFiles/packmol.dir/src/sizes.f90.o -[ 5%] Building Fortran object CMakeFiles/packmol.dir/src/swaptypemod.f90.o -[ 7%] Building Fortran object CMakeFiles/packmol.dir/src/gencan.f.o -[ 10%] Building Fortran object CMakeFiles/packmol.dir/src/ahestetic.f90.o -[ 12%] Building Fortran object CMakeFiles/packmol.dir/src/exit_codes.f90.o +[ 2%] Building Fortran object CMakeFiles/packmol.dir/src/ahestetic.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/ahestetic.f90 -o CMakeFiles/packmol.dir/src/ahestetic.f90.o +[ 5%] Building Fortran object CMakeFiles/packmol.dir/src/sizes.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/sizes.f90 -o CMakeFiles/packmol.dir/src/sizes.f90.o +[ 7%] Building Fortran object CMakeFiles/packmol.dir/src/exit_codes.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c 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-ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/flashsort.f90 -o CMakeFiles/packmol.dir/src/flashsort.f90.o [ 25%] Building Fortran object CMakeFiles/packmol.dir/src/random.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/jacobi.f90 -o CMakeFiles/packmol.dir/src/jacobi.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/random.f90 -o CMakeFiles/packmol.dir/src/random.f90.o -/usr/bin/cmake -E cmake_copy_f90_mod swaptypemod.mod CMakeFiles/packmol.dir/swaptypemod.mod.stamp GNU -/usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/ahestetic.f90.o.provides.build -/usr/bin/cmake -E cmake_copy_f90_mod exit_codes.mod CMakeFiles/packmol.dir/exit_codes.mod.stamp GNU -[ 27%] Building Fortran object CMakeFiles/packmol.dir/src/flashmod.f90.o -/usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/sizes.f90.o.provides.build -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/flashmod.f90 -o CMakeFiles/packmol.dir/src/flashmod.f90.o -/usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/swaptypemod.f90.o.provides.build -[ 30%] Building Fortran object CMakeFiles/packmol.dir/src/input.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/input.f90 -o CMakeFiles/packmol.dir/src/input.f90.o -[ 32%] Building Fortran object CMakeFiles/packmol.dir/src/usegencan.f90.o +/usr/bin/cmake -E cmake_copy_f90_mod ahestetic.mod CMakeFiles/packmol.dir/ahestetic.mod.stamp GNU +/usr/bin/cmake -E cmake_copy_f90_mod sizes.mod CMakeFiles/packmol.dir/sizes.mod.stamp GNU /build/reproducible-path/packmol-20.14.3/src/gencan.f:62:37: 62 | subroutine evalnal(n,x,m,lambda,rho,g,flag) @@ -576,6 +602,7 @@ 2592 | +fmin,maxfc,iprint,fcnt,inform,xtrial,d,gamma,sigma1,sigma2,sterel, | 1 Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] +/usr/bin/cmake -E cmake_copy_f90_mod exit_codes.mod CMakeFiles/packmol.dir/exit_codes.mod.stamp GNU /build/reproducible-path/packmol-20.14.3/src/gencan.f:3827:61: 3827 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) @@ -586,8 +613,6 @@ 3827 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/usegencan.f90 -o CMakeFiles/packmol.dir/src/usegencan.f90.o -/usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/exit_codes.f90.o.provides.build /build/reproducible-path/packmol-20.14.3/src/gencan.f:4:36: 4 | subroutine evalal(n,x,m,lambda,rho,f,flag) @@ -633,67 +658,82 @@ 5186 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'xtmp' at (1) [-Wunused-dummy-argument] -[ 35%] Building Fortran object CMakeFiles/packmol.dir/src/title.f90.o /build/reproducible-path/packmol-20.14.3/src/gencan.f:125:25: 125 | subroutine evalhd(n) | 1 Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] -[ 37%] Building Fortran object CMakeFiles/packmol.dir/src/comparegrad.f90.o -/usr/bin/cmake -E cmake_copy_f90_mod flashsort.mod 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CMakeFiles/packmol.dir/src/cenmass.f90.o +[ 82%] Building Fortran object CMakeFiles/packmol.dir/src/initial.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/pgencan.f90 -o CMakeFiles/packmol.dir/src/pgencan.f90.o +[ 85%] Building Fortran object CMakeFiles/packmol.dir/src/setsizes.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/initial.f90 -o CMakeFiles/packmol.dir/src/initial.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/setsizes.f90 -o CMakeFiles/packmol.dir/src/setsizes.f90.o +[ 87%] Building Fortran object CMakeFiles/packmol.dir/src/getinp.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/getinp.f90 -o CMakeFiles/packmol.dir/src/getinp.f90.o +[ 90%] Building Fortran object CMakeFiles/packmol.dir/src/strlength.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/strlength.f90 -o CMakeFiles/packmol.dir/src/strlength.f90.o +[ 92%] Building Fortran object CMakeFiles/packmol.dir/src/output.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/output.f90 -o CMakeFiles/packmol.dir/src/output.f90.o +[ 95%] Building Fortran object CMakeFiles/packmol.dir/src/checkpoint.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/checkpoint.f90 -o CMakeFiles/packmol.dir/src/checkpoint.f90.o +[ 97%] Building Fortran object CMakeFiles/packmol.dir/src/writesuccess.f90.o +/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/writesuccess.f90 -o CMakeFiles/packmol.dir/src/writesuccess.f90.o /build/reproducible-path/packmol-20.14.3/src/getinp.f90:962:11: 962 | if(ires.ne.ireslast) then @@ -704,20 +744,6 @@ 947 | integer :: iread, ires, ireslast, nres, ioerr | ^ note: 'ireslast' was declared here -[ 95%] Building Fortran object CMakeFiles/packmol.dir/src/computeg.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/computeg.f90 -o CMakeFiles/packmol.dir/src/computeg.f90.o -[ 97%] Building Fortran object CMakeFiles/packmol.dir/src/computef.f90.o -/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.14.3=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-20.14.3/src/computef.f90 -o CMakeFiles/packmol.dir/src/computef.f90.o -/build/reproducible-path/packmol-20.14.3/src/output.f90:572:32: - - 572 | nres = ilres - ifres + 1 - | ^ -Warning: 'ilres' may be used uninitialized [-Wmaybe-uninitialized] -/build/reproducible-path/packmol-20.14.3/src/output.f90:18:53: - - 18 | irest, iimol, ichain, iatom, irec, ilres, ifres,& - | ^ -note: 'ilres' was declared here /build/reproducible-path/packmol-20.14.3/app/packmol.f90:346:44: 346 | iratom(icart,iratcount) = iirest @@ -728,6 +754,16 @@ 50 | integer :: i, iline, iiatom, iat, iirest, iratcount, ival | ^ note: 'iirest' was declared here +/build/reproducible-path/packmol-20.14.3/src/output.f90:572:32: + + 572 | nres = ilres - ifres + 1 + | ^ +Warning: 'ilres' may be used uninitialized [-Wmaybe-uninitialized] +/build/reproducible-path/packmol-20.14.3/src/output.f90:18:53: + + 18 | irest, iimol, ichain, iatom, irec, ilres, ifres,& + | ^ +note: 'ilres' was declared here /build/reproducible-path/packmol-20.14.3/src/gencan.f:3361:72: 3361 | + beta ** 2 * dnorm2 @@ -893,12 +929,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/14565/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14565/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/240142 and its subdirectories -I: Current time: Sat Apr 27 05:54:51 -12 2024 -I: pbuilder-time-stamp: 1714240491 +I: removing directory /srv/workspace/pbuilder/14565 and its subdirectories +I: Current time: Sat May 31 14:18:47 +14 2025 +I: pbuilder-time-stamp: 1748650727