Diff of the two buildlogs: -- --- b1/build.log 2024-05-21 08:14:10.558527693 +0000 +++ b2/build.log 2024-05-21 08:24:30.696146914 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 20 20:05:25 -12 2024 -I: pbuilder-time-stamp: 1716278725 +I: Current time: Tue May 21 22:14:14 +14 2024 +I: pbuilder-time-stamp: 1716279254 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying drop_deprecated_nisext_for_python3.12_compatibility.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3235962/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2412602/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 21 08:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2412602/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2412602/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='83bd9bfa5b104299993156b80deefdde' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3235962' - PS1='# ' - PS2='> ' + INVOCATION_ID=d906519ec0a84fc1ada3ff870f11bfac + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2412602 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wcCCoKuy/pbuilderrc_jDTH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wcCCoKuy/b1 --logfile b1/build.log nibabel_5.2.1-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wcCCoKuy/pbuilderrc_pmrb --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wcCCoKuy/b2 --logfile b2/build.log nibabel_5.2.1-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 18 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3235962/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 20 11:23 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2412602/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -333,7 +365,7 @@ Get: 182 http://deb.debian.org/debian trixie/main arm64 python3-werkzeug all 3.0.3-1 [207 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 python3-pytest-httpserver all 1.0.10-1 [21.1 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 python3-texext all 0.6.7-5 [22.5 kB] -Fetched 117 MB in 1s (101 MB/s) +Fetched 117 MB in 1s (133 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19746 files and directories currently installed.) @@ -931,8 +963,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue May 21 08:05:56 UTC 2024. -Universal Time is now: Tue May 21 08:05:56 UTC 2024. +Local time is now: Tue May 21 08:15:25 UTC 2024. +Universal Time is now: Tue May 21 08:15:25 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1112,7 +1144,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/nibabel-5.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nibabel_5.2.1-1_source.changes +I: user script /srv/workspace/pbuilder/2412602/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2412602/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nibabel-5.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nibabel_5.2.1-1_source.changes dpkg-buildpackage: info: source package nibabel dpkg-buildpackage: info: source version 5.2.1-1 dpkg-buildpackage: info: source distribution unstable @@ -1129,8 +1165,8 @@ make[1]: Entering directory '/build/reproducible-path/nibabel-5.2.1' /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/nibabel-5.2.1' -/bin/sh: 1: python: not found -/bin/sh: 1: git: not found +/bin/sh: line 1: python: command not found +/bin/sh: line 1: git: command not found /usr/bin/make -C doc clean make[3]: Entering directory '/build/reproducible-path/nibabel-5.2.1/doc' rm -rf source/reference/*.rst @@ -1352,17 +1388,17 @@ /usr/share/sphinx/scripts/python3/sphinx-build -b html -d ../build/doctrees source ../build/html Running Sphinx v7.2.6 loading intersphinx inventory from https://docs.python.org/3/objects.inv... -loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... -loading intersphinx inventory from https://docs.scipy.org/doc/scipy/objects.inv... -loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +loading intersphinx inventory from https://docs.scipy.org/doc/scipy/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 127 source files that are out of date @@ -1427,10 +1463,10 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nibabel-5.2.1' PYBUILD_SYSTEM=custom \ -PYBUILD_TEST_ARGS="PATH={dir}/.pybuild/cpython3_{version}/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" \ +PYBUILD_TEST_ARGS="PATH={dir}/.pybuild/cpython3_{version}/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. -I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/build LC_ALL=C.UTF-8 python3.12 -m pytest --verbose +I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/build LC_ALL=C.UTF-8 python3.12 -m pytest --verbose ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache @@ -7233,8 +7269,8 @@ if checker(have_version) < checker(version): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 5457 passed, 96 skipped, 40 xfailed, 4 xpassed, 3102 warnings in 171.69s (0:02:51) = -I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/build LC_ALL=C.UTF-8 python3.11 -m pytest --verbose += 5457 passed, 96 skipped, 40 xfailed, 4 xpassed, 3102 warnings in 157.47s (0:02:37) = +I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/build LC_ALL=C.UTF-8 python3.11 -m pytest --verbose ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache @@ -13004,23 +13040,12 @@ /build/reproducible-path/nibabel-5.2.1/nibabel/tests/test_scaling.py:133: RuntimeWarning: invalid value encountered in cast assert_array_equal(data_back, [np.array(np.nan).astype(np.int32), 99]) -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters - /build/reproducible-path/nibabel-5.2.1/nibabel/volumeutils.py:1174: RuntimeWarning: overflow encountered in multiply - tst_trans = tst_trans * slope - nisext/tests/test_sexts.py: 18 warnings /build/reproducible-path/nibabel-5.2.1/nisext/sexts.py:199: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if checker(have_version) < checker(version): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 5463 passed, 96 skipped, 35 xfailed, 3 xpassed, 315 warnings in 161.22s (0:02:41) = += 5463 passed, 96 skipped, 35 xfailed, 3 xpassed, 307 warnings in 162.38s (0:02:42) = make[1]: Leaving directory '/build/reproducible-path/nibabel-5.2.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=build @@ -13091,12 +13116,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2412602/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2412602/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3235962 and its subdirectories -I: Current time: Mon May 20 20:14:09 -12 2024 -I: pbuilder-time-stamp: 1716279249 +I: removing directory /srv/workspace/pbuilder/2412602 and its subdirectories +I: Current time: Tue May 21 22:24:29 +14 2024 +I: pbuilder-time-stamp: 1716279869