Diff of the two buildlogs: -- --- b1/build.log 2024-11-21 12:17:49.472144768 +0000 +++ b2/build.log 2024-11-21 12:21:24.970411822 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Nov 21 00:14:10 -12 2024 -I: pbuilder-time-stamp: 1732191250 +I: Current time: Fri Nov 22 02:18:03 +14 2024 +I: pbuilder-time-stamp: 1732191483 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3844131/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2634068/tmp/hooks/D01_modify_environment starting +debug: Running on codethink02-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 21 12:18 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2634068/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2634068/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='5a7d0c2612744ffba48a33418f41bd59' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3844131' - PS1='# ' - PS2='> ' + INVOCATION_ID=832c688ba1a3491b9aa7154096cae528 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2634068 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.x7zCwBJB/pbuilderrc_XSem --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.x7zCwBJB/b1 --logfile b1/build.log mmseqs2_15-6f452+ds-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.x7zCwBJB/pbuilderrc_Cwfq --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.x7zCwBJB/b2 --logfile b2/build.log mmseqs2_15-6f452+ds-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3844131/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2634068/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -184,7 +216,7 @@ Get: 58 http://deb.debian.org/debian trixie/main arm64 libxxhash-dev arm64 0.8.2-2+b2 [81.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 36.4 MB in 0s (215 MB/s) +Fetched 36.4 MB in 0s (174 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) @@ -439,7 +471,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes +I: user script /srv/workspace/pbuilder/2634068/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2634068/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 15-6f452+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -515,7 +551,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (5.6s) +-- Configuring done (4.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -541,124 +577,121 @@ make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" make -f lib/cacode/CMakeFiles/cacode.dir/build.make 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/build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h +[ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h [ 6%] Generating ../generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide.out [ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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/build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp /usr/bin/ranlib libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f 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-MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp -[ 8%] Generating ../generated/PAM30.out.h +[ 7%] Generating ../generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +[ 7%] Built target version +[ 7%] Linking C static library libmicrotar.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp -[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ @@ -670,6 +703,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 367 | ret->value = s->value; @@ -680,6 +714,7 @@ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 446 | ret->value = NAN; | ^~ @@ -688,256 +723,257 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h -[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +/usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 10%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake [ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 11%] Built target microtar cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp [ 11%] Generating ../generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -[ 11%] Built target microtar cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp -[ 11%] Generating ../generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h +[ 13%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +[ 13%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +/usr/bin/ranlib libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' +[ 13%] Built target cacode +[ 13%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h.tmp -[ 11%] Generating ../generated/cs219.lib.h +[ 13%] Generating ../generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h -[ 12%] Generating ../generated/krona_prelude.html.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +[ 15%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' -[ 13%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h -[ 13%] Built target cacode -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h +[ 17%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h -[ 15%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp -[ 15%] Generating ../generated/K4000.crf.h -[ 15%] Generating ../generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h +[ 17%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' +[ 17%] Generating ../generated/easysearch.sh.h +[ 17%] Built target ksw2 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp -[ 15%] Generating ../generated/easycluster.sh.h +[ 17%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp -[ 16%] Generating ../generated/easytaxonomy.sh.h +[ 18%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp -[ 18%] Generating ../generated/easyrbh.sh.h +[ 19%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +[ 20%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h -[ 19%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h -[ 19%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +[ 20%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp -[ 19%] Generating ../generated/map.sh.h +[ 20%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h -[ 19%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h +[ 20%] Generating ../generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp -[ 20%] Generating ../generated/linclust.sh.h +[ 21%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' -[ 20%] Generating ../generated/clustering.sh.h +[ 21%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -[ 20%] Built target ksw2 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -[ 21%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h +[ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h -[ 22%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h +[ 23%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp [ 24%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated [ 25%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h -[ 25%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp +[ 25%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h.tmp +[ 25%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h -[ 25%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h [ 26%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp -[ 27%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp +[ 27%] Generating ../generated/multihitdb.sh.h +[ 27%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h -[ 27%] Generating ../generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp [ 27%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h -[ 27%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp +[ 27%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +[ 27%] Generating ../generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp [ 27%] Generating ../generated/linsearch.sh.h -[ 27%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -[ 28%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h +[ 28%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -[ 28%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h [ 28%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' @@ -950,17 +986,17 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp @@ -1013,7 +1049,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1082,9 +1122,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1119,18 +1160,43 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1139,14 +1205,6 @@ 33 | NuclAA() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -1155,22 +1213,10 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ @@ -1179,24 +1225,15 @@ 100 | SeqProf(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1267,8 +1304,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1304,8 +1343,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1339,10 +1377,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1375,8 +1411,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -1415,12 +1449,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -1458,8 +1492,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/A3MReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -1497,14 +1531,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp -[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1538,8 +1573,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1572,13 +1606,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1611,10 +1645,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1647,10 +1687,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ExpressionParser.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1683,14 +1725,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Debug.cpp -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ExpressionParser.cpp -[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -1728,6 +1762,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/HeaderSummarizer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -1810,8 +1846,13 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1844,8 +1885,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { @@ -1879,18 +1918,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && 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object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1923,10 +1952,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1960,7 +1993,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1995,9 +2032,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2032,9 +2069,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2075,6 +2111,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: @@ -2110,8 +2150,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -2149,22 +2187,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2197,9 +2228,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2232,16 +2268,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /usr/include/string.h:548, from /usr/include/c++/14/cstring:43, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, @@ -2253,14 +2279,19 @@ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2294,8 +2325,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2328,8 +2362,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: @@ -2365,10 +2405,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -2409,6 +2445,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -2433,6 +2471,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -2446,8 +2485,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, @@ -2484,8 +2522,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -2528,6 +2564,8 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: @@ -2597,10 +2635,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2633,19 +2674,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2678,8 +2708,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2713,7 +2745,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2746,12 +2778,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2820,7 +2860,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2853,12 +2893,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp -[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2892,7 +2928,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2959,12 +2995,55 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9: +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: +/usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 952 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:418:14, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: +/usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified size between 18446743867551121408 and 18446744073709551520 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 952 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In member function ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:418:14: note: destination object allocated here + 418 | std::fill(profile, profile + (seqLen * (Sequence::PROFILE_AA_SIZE + 4)), 0.0); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: +/usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 952 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:418:14, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: +/usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified size between 18446743867551121408 and 18446744073709551520 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 952 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In member function ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:418:14: note: destination object allocated here + 418 | std::fill(profile, profile + (seqLen * (Sequence::PROFILE_AA_SIZE + 4)), 0.0); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3000,7 +3079,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3033,8 +3112,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3067,14 +3156,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3107,46 +3196,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp -In file included from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9: -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: -/usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 952 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:418:14, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: -/usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified size between 18446743867551121408 and 18446744073709551520 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 952 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In member function ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:418:14: note: destination object allocated here - 418 | std::fill(profile, profile + (seqLen * (Sequence::PROFILE_AA_SIZE + 4)), 0.0); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3180,8 +3232,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3251,29 +3302,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: -/usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 952 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:418:14, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: -/usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified size between 18446743867551121408 and 18446744073709551520 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 952 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In member function ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:418:14: note: destination object allocated here - 418 | std::fill(profile, profile + (seqLen * (Sequence::PROFILE_AA_SIZE + 4)), 0.0); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3341,12 +3384,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3380,8 +3418,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3414,10 +3451,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3452,11 +3488,14 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3489,14 +3528,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3563,6 +3599,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3597,12 +3635,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object 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src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3637,6 +3669,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3671,8 +3707,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3707,11 +3741,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3744,15 +3780,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3821,6 +3855,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated 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CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3895,10 +3931,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3931,6 +3967,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated 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CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -3967,10 +4007,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4005,8 +4043,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4039,16 +4079,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4082,7 +4114,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4115,8 +4147,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && 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object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4151,6 +4183,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4188,10 +4228,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4229,7 +4265,7 @@ [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4263,7 +4299,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4299,6 +4335,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { | ^~~~~~~~~~~~~~~~~~~~~ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated 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CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4333,8 +4373,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: @@ -4370,10 +4408,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4408,6 +4442,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4444,12 +4484,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4484,6 +4518,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -4525,7 +4563,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4558,16 +4596,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4600,15 +4632,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4641,10 +4672,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4679,8 +4715,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4717,6 +4751,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -4789,6 +4825,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -4825,10 +4865,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated 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CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4861,14 +4901,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4902,7 +4936,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4935,17 +4969,19 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -4971,6 +5007,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5005,10 +5045,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering 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/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5081,8 +5117,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -5119,8 +5153,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -5159,6 +5191,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -5195,14 +5229,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5236,7 +5270,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5269,8 +5307,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: @@ -5311,8 +5347,7 @@ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5345,8 +5380,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5379,12 +5419,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5419,8 +5453,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5456,10 +5495,7 @@ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5492,8 +5528,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5528,10 +5562,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5566,8 +5604,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5602,12 +5638,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5640,8 +5672,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5674,6 +5712,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5708,8 +5750,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5744,8 +5786,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5780,16 +5820,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5860,13 +5890,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5899,8 +5931,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5920,23 +5959,11 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -5945,6 +5972,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -5970,10 +6006,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6006,6 +6040,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o @@ -6120,8 +6156,7 @@ [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6154,12 +6189,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6192,6 +6224,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -6302,12 +6338,14 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6340,9 +6378,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6375,12 +6422,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6413,18 +6458,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6492,9 +6528,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6528,7 +6569,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6561,12 +6604,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6599,16 +6641,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6628,13 +6664,27 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -6642,23 +6692,11 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -6676,9 +6714,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6913,12 +6949,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2634068/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2634068/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3844131 and its subdirectories -I: Current time: Thu Nov 21 00:17:48 -12 2024 -I: pbuilder-time-stamp: 1732191468 +I: removing directory /srv/workspace/pbuilder/2634068 and its subdirectories +I: Current time: Fri Nov 22 02:21:23 +14 2024 +I: pbuilder-time-stamp: 1732191683