Diff of the two buildlogs:
--
--- b1/build.log 2025-03-05 18:28:34.691151838 +0000
+++ b2/build.log 2025-03-05 18:29:28.708711929 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Wed Mar 5 06:27:50 -12 2025
-I: pbuilder-time-stamp: 1741199270
+I: Current time: Wed Apr 8 14:51:37 +14 2026
+I: pbuilder-time-stamp: 1775609497
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
@@ -29,52 +29,84 @@
dpkg-source: info: applying gcc-15.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/1089113/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/3123384/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink03-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Apr 8 00:51 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/3123384/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/3123384/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='arm64'
- DEBIAN_FRONTEND='noninteractive'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=arm64
+ DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
- DISTRIBUTION='trixie'
- HOME='/root'
- HOST_ARCH='arm64'
+ DIRSTACK=()
+ DISTRIBUTION=trixie
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=aarch64
+ HOST_ARCH=arm64
IFS='
'
- INVOCATION_ID='8007b5d3d99c4efc823fef5483cb5f58'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='1089113'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=b21c2b35cb104bd58bebbf3542a69fd1
+ LANG=C
+ LANGUAGE=nl_BE:nl
+ LC_ALL=C
+ MACHTYPE=aarch64-unknown-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=3123384
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4mbcqJ8T/pbuilderrc_unS0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4mbcqJ8T/b1 --logfile b1/build.log lucy_1.20-6.dsc'
- SUDO_GID='109'
- SUDO_UID='104'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://192.168.101.4:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4mbcqJ8T/pbuilderrc_ZfyG --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4mbcqJ8T/b2 --logfile b2/build.log lucy_1.20-6.dsc'
+ SUDO_GID=109
+ SUDO_UID=104
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://192.168.101.4:3128
I: uname -a
- Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/1089113/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/3123384/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -140,7 +172,7 @@
Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
-Fetched 20.1 MB in 0s (125 MB/s)
+Fetched 20.1 MB in 0s (91.1 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19914 files and directories currently installed.)
@@ -275,7 +307,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lucy_1.20-6_source.changes
+I: user script /srv/workspace/pbuilder/3123384/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/3123384/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lucy_1.20-6_source.changes
dpkg-buildpackage: info: source package lucy
dpkg-buildpackage: info: source version 1.20-6
dpkg-buildpackage: info: source distribution unstable
@@ -314,6 +350,8 @@
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qual_trim.o qual_trim.c
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abi.o abi.c
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c
+cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c
+cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c
qual_trim.c:10:1: warning: "/*" within comment [-Wcomment]
10 | /* qual_trim.c - Quality trimming algorithm which determines a "clean"
qual_trim.c:11:1: warning: "/*" within comment [-Wcomment]
@@ -392,8 +430,7 @@
47 | /*
qual_trim.c:48:1: warning: "/*" within comment [-Wcomment]
48 | /**************************************************************************/
-cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c
-cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c
+lucy.c: In function 'hashstring':
abi.c: In function 'abi_align':
abi.c:196:18: warning: array subscript has type 'char' [-Wchar-subscripts]
196 | if (badness[a[i]][b[j]]) {
@@ -422,6 +459,9 @@
abi.c:246:46: warning: array subscript has type 'char' [-Wchar-subscripts]
246 | l<width && r<height && badness[a[l]][b[r]]==0
| ~^~~
+lucy.c:112:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
+ 112 | if (g = value&0xF0000000) {
+ | ^
abi.c:246:52: warning: array subscript has type 'char' [-Wchar-subscripts]
246 | l<width && r<height && badness[a[l]][b[r]]==0
| ~^~~
@@ -431,9 +471,14 @@
abi.c:253:36: warning: array subscript has type 'char' [-Wchar-subscripts]
253 | if ((count+=badness[a[l]][b[r]])<VERYBAD) {
| ~^~~
+lucy.c: In function 'worker':
+lucy.c:173:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
+ 173 | int id=(int)arg;
+ | ^
abi.c:267:46: warning: array subscript has type 'char' [-Wchar-subscripts]
267 | l<width && r<height && badness[a[l]][b[r]]==0
| ~^~~
+done!
abi.c:267:52: warning: array subscript has type 'char' [-Wchar-subscripts]
267 | l<width && r<height && badness[a[l]][b[r]]==0
| ~^~~
@@ -485,17 +530,11 @@
abi.c:342:36: warning: array subscript has type 'char' [-Wchar-subscripts]
342 | if ((count+=badness[a[l]][b[r]])<VERYBAD) {
| ~^~~
-done!
-lucy.c: In function 'hashstring':
-lucy.c:112:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
- 112 | if (g = value&0xF0000000) {
- | ^
-lucy.c: In function 'worker':
-lucy.c:173:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
- 173 | int id=(int)arg;
- | ^
-vector.c: In function 'construct_vector_tags':
splice.c: In function 'splice_align_left':
+lucy.c: In function 'main':
+lucy.c:532:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
+ 532 | if (pthread_create(&threads[i], NULL, worker, (void*)i))
+ | ^
splice.c:69:32: warning: array subscript has type 'char' [-Wchar-subscripts]
69 | Score(0,0)=max_score=match[*a][*b];
| ^~
@@ -514,64 +553,37 @@
splice.c:77:38: note: in expansion of macro 'Direc'
77 | left=Score(i-1,0)+left_penalty[Direc(i-1,0)];
| ^~~~~
-qual_trim.c:215:1: warning: "/*" within comment [-Wcomment]
- 215 | /* Determines some number of candidate clean ranges using a particular
splice.c:91:19: warning: array subscript has type 'char' [-Wchar-subscripts]
91 | score=match[*a][b[j]];
| ^~
-qual_trim.c:216:1: warning: "/*" within comment [-Wcomment]
- 216 | /* window size.
splice.c:91:24: warning: array subscript has type 'char' [-Wchar-subscripts]
91 | score=match[*a][b[j]];
| ~^~~
-qual_trim.c:217:1: warning: "/*" within comment [-Wcomment]
- 217 | /*
-qual_trim.c:218:1: warning: "/*" within comment [-Wcomment]
- 218 | /* Globals used:
-qual_trim.c:219:1: warning: "/*" within comment [-Wcomment]
- 219 | /* double end_limit, (maximum allowed probability of error for bases)
splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts]
17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)]
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
splice.c:92:36: note: in expansion of macro 'Direc'
92 | top=Score(0,j-1)+top_penalty[Direc(0,j-1)];
| ^~~~~
-qual_trim.c:220:1: warning: "/*" within comment [-Wcomment]
- 220 | /* ( at each end of clean range)
-qual_trim.c:221:1: warning: "/*" within comment [-Wcomment]
- 221 | /*
-lucy.c: In function 'main':
splice.c:108:25: warning: array subscript has type 'char' [-Wchar-subscripts]
108 | score+=match[a[i]][b[j]];
| ~^~~
+lucy.c:793:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
+ 793 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) {
+ | ^
+vector.c: In function 'construct_vector_tags':
+vector.c:86:34: warning: array subscript has type 'char' [-Wchar-subscripts]
+ 86 | accr|=tag_code(rev_code[seq[len-k%len-1]]);
+ | ~~~^~~~~~~~~~~~~
splice.c:108:31: warning: array subscript has type 'char' [-Wchar-subscripts]
108 | score+=match[a[i]][b[j]];
| ~^~~
splice.c:111:24: warning: array subscript has type 'char' [-Wchar-subscripts]
111 | score=match[a[i]][b[j]];
| ~^~~
-qual_trim.c:333:1: warning: "/*" within comment [-Wcomment]
- 333 | /* Finds the largest subsequence of a sequence whose average probability
-qual_trim.c:334:1: warning: "/*" within comment [-Wcomment]
- 334 | /* of error does not exceed a specified maximum.
-qual_trim.c:335:1: warning: "/*" within comment [-Wcomment]
- 335 | /*
-vector.c:86:34: warning: array subscript has type 'char' [-Wchar-subscripts]
- 86 | accr|=tag_code(rev_code[seq[len-k%len-1]]);
- | ~~~^~~~~~~~~~~~~
-qual_trim.c:336:1: warning: "/*" within comment [-Wcomment]
- 336 | /* Globals used:
-qual_trim.c:337:1: warning: "/*" within comment [-Wcomment]
- 337 | /* double max_avg_error, (maximum allowed average probability of error)
-qual_trim.c:338:1: warning: "/*" within comment [-Wcomment]
- 338 | /* double end_limit, (maximum allowed probability of error for bases)
-qual_trim.c:339:1: warning: "/*" within comment [-Wcomment]
- 339 | /* ( at each end of clean range)
splice.c:111:30: warning: array subscript has type 'char' [-Wchar-subscripts]
111 | score=match[a[i]][b[j]];
| ~^~~
-qual_trim.c:340:1: warning: "/*" within comment [-Wcomment]
- 340 | /*
splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts]
17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)]
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
@@ -584,8 +596,6 @@
splice.c:115:40: note: in expansion of macro 'Direc'
115 | left=Score(i-1,j)+left_penalty[Direc(i-1,j)];
| ^~~~~
-qual_trim.c:435:1: warning: "/*" within comment [-Wcomment]
- 435 | /* Determines a single clean range, after recursively considering all of
splice.c:140:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
140 | while (direc=Direc(i,j))
| ^~~~~
@@ -593,30 +603,9 @@
splice.c:190:30: warning: array subscript has type 'char' [-Wchar-subscripts]
190 | Score(0,0)=max_score=match[*a][*b];
| ^~
-qual_trim.c:436:1: warning: "/*" within comment [-Wcomment]
- 436 | /* the specified window sizes. Calls average_error_trim to trim the
-qual_trim.c:437:1: warning: "/*" within comment [-Wcomment]
- 437 | /* results of the final window based on overall average probability of
-qual_trim.c:438:1: warning: "/*" within comment [-Wcomment]
- 438 | /* error.
-lucy.c:532:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
- 532 | if (pthread_create(&threads[i], NULL, worker, (void*)i))
- | ^
-qual_trim.c:439:1: warning: "/*" within comment [-Wcomment]
- 439 | /*
-qual_trim.c:440:1: warning: "/*" within comment [-Wcomment]
- 440 | /* Globals used:
-qual_trim.c:441:1: warning: "/*" within comment [-Wcomment]
- 441 | /* double max_avg_error, (maximum allowed average probability of error)
splice.c:190:34: warning: array subscript has type 'char' [-Wchar-subscripts]
190 | Score(0,0)=max_score=match[*a][*b];
| ^~
-qual_trim.c:442:1: warning: "/*" within comment [-Wcomment]
- 442 | /* double end_limit, (maximum allowed probability of error for bases)
-qual_trim.c:443:1: warning: "/*" within comment [-Wcomment]
- 443 | /* ( at each end of clean range)
-qual_trim.c:444:1: warning: "/*" within comment [-Wcomment]
- 444 | /*
splice.c:197:18: warning: array subscript has type 'char' [-Wchar-subscripts]
197 | score=match[a[i]][*b];
| ~^~~
@@ -632,59 +621,131 @@
splice.c:212:17: warning: array subscript has type 'char' [-Wchar-subscripts]
212 | score=match[*a][b[j]];
| ^~
-qual_trim.c:570:1: warning: "/*" within comment [-Wcomment]
- 570 | /* Sets the window size and average probability of error allowed for the
splice.c:212:22: warning: array subscript has type 'char' [-Wchar-subscripts]
212 | score=match[*a][b[j]];
| ~^~~
-qual_trim.c:571:1: warning: "/*" within comment [-Wcomment]
- 571 | /* terminal windows that "bracket" the candidate clean range.
-qual_trim.c:572:1: warning: "/*" within comment [-Wcomment]
- 572 | /*
-qual_trim.c:573:1: warning: "/*" within comment [-Wcomment]
- 573 | /* Globals used:
splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts]
17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)]
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
splice.c:213:34: note: in expansion of macro 'Direc'
213 | top=Score(0,j-1)+top_penalty[Direc(0,j-1)];
| ^~~~~
-qual_trim.c:574:1: warning: "/*" within comment [-Wcomment]
- 574 | /* int bracket_window, (size of terminal window)
-qual_trim.c:575:1: warning: "/*" within comment [-Wcomment]
- 575 | /* double bracket_error (allowable average prob. error in window)
-qual_trim.c:576:1: warning: "/*" within comment [-Wcomment]
- 576 | /*
-qual_trim.c:588:1: warning: "/*" within comment [-Wcomment]
- 588 | /* Finds the leftmost window, and the rightmost window, which meet the
splice.c:229:23: warning: array subscript has type 'char' [-Wchar-subscripts]
229 | score+=match[a[i]][b[j]];
| ~^~~
-qual_trim.c:589:1: warning: "/*" within comment [-Wcomment]
- 589 | /* specified error criterion. The purpose of this function is to bracket
splice.c:229:29: warning: array subscript has type 'char' [-Wchar-subscripts]
229 | score+=match[a[i]][b[j]];
| ~^~~
-qual_trim.c:590:1: warning: "/*" within comment [-Wcomment]
- 590 | /* the portion of the sequence that is of decent quality -- i.e. to
splice.c:232:22: warning: array subscript has type 'char' [-Wchar-subscripts]
232 | score=match[a[i]][b[j]];
| ~^~~
-qual_trim.c:591:1: warning: "/*" within comment [-Wcomment]
- 591 | /* eliminate the really bad quality stuff that is often found on either
-qual_trim.c:592:1: warning: "/*" within comment [-Wcomment]
- 592 | /* end. The beginning of the first matching window, and the end of the
splice.c:232:28: warning: array subscript has type 'char' [-Wchar-subscripts]
232 | score=match[a[i]][b[j]];
| ~^~~
-qual_trim.c:593:1: warning: "/*" within comment [-Wcomment]
- 593 | /* last, bracket the sequence range that will be looked at to find the
splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts]
17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)]
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
splice.c:235:36: note: in expansion of macro 'Direc'
235 | top=Score(i,j-1)+top_penalty[Direc(i,j-1)];
| ^~~~~
+splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts]
+ 17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)]
+ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
+splice.c:236:38: note: in expansion of macro 'Direc'
+ 236 | left=Score(i-1,j)+left_penalty[Direc(i-1,j)];
+ | ^~~~~
+splice.c:261:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
+ 261 | while (direc=Direc(i,j))
+ | ^~~~~
+splice.c:277:15: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
+ 277 | if (j>=span && j>=width-max_i || j>height/2)
+ | ~~~~~~~~^~~~~~~~~~~~~~~~~
+lucy.c:632:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 632 | fgets(buf, BUFFER_LENGTH, qul_file);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+vector.c: In function 'tag_code':
+vector.c:45:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
+ 45 | return tmp;
+ | ^~~
+vector.c:23:16: note: 'tmp' was declared here
+ 23 | register int tmp;
+ | ^~~
+qual_trim.c:215:1: warning: "/*" within comment [-Wcomment]
+ 215 | /* Determines some number of candidate clean ranges using a particular
+qual_trim.c:216:1: warning: "/*" within comment [-Wcomment]
+ 216 | /* window size.
+qual_trim.c:217:1: warning: "/*" within comment [-Wcomment]
+ 217 | /*
+qual_trim.c:218:1: warning: "/*" within comment [-Wcomment]
+ 218 | /* Globals used:
+qual_trim.c:219:1: warning: "/*" within comment [-Wcomment]
+ 219 | /* double end_limit, (maximum allowed probability of error for bases)
+qual_trim.c:220:1: warning: "/*" within comment [-Wcomment]
+ 220 | /* ( at each end of clean range)
+qual_trim.c:221:1: warning: "/*" within comment [-Wcomment]
+ 221 | /*
+qual_trim.c:333:1: warning: "/*" within comment [-Wcomment]
+ 333 | /* Finds the largest subsequence of a sequence whose average probability
+qual_trim.c:334:1: warning: "/*" within comment [-Wcomment]
+ 334 | /* of error does not exceed a specified maximum.
+qual_trim.c:335:1: warning: "/*" within comment [-Wcomment]
+ 335 | /*
+qual_trim.c:336:1: warning: "/*" within comment [-Wcomment]
+ 336 | /* Globals used:
+qual_trim.c:337:1: warning: "/*" within comment [-Wcomment]
+ 337 | /* double max_avg_error, (maximum allowed average probability of error)
+qual_trim.c:338:1: warning: "/*" within comment [-Wcomment]
+ 338 | /* double end_limit, (maximum allowed probability of error for bases)
+qual_trim.c:339:1: warning: "/*" within comment [-Wcomment]
+ 339 | /* ( at each end of clean range)
+qual_trim.c:340:1: warning: "/*" within comment [-Wcomment]
+ 340 | /*
+qual_trim.c:435:1: warning: "/*" within comment [-Wcomment]
+ 435 | /* Determines a single clean range, after recursively considering all of
+qual_trim.c:436:1: warning: "/*" within comment [-Wcomment]
+ 436 | /* the specified window sizes. Calls average_error_trim to trim the
+qual_trim.c:437:1: warning: "/*" within comment [-Wcomment]
+ 437 | /* results of the final window based on overall average probability of
+qual_trim.c:438:1: warning: "/*" within comment [-Wcomment]
+ 438 | /* error.
+qual_trim.c:439:1: warning: "/*" within comment [-Wcomment]
+ 439 | /*
+qual_trim.c:440:1: warning: "/*" within comment [-Wcomment]
+ 440 | /* Globals used:
+qual_trim.c:441:1: warning: "/*" within comment [-Wcomment]
+ 441 | /* double max_avg_error, (maximum allowed average probability of error)
+qual_trim.c:442:1: warning: "/*" within comment [-Wcomment]
+ 442 | /* double end_limit, (maximum allowed probability of error for bases)
+qual_trim.c:443:1: warning: "/*" within comment [-Wcomment]
+ 443 | /* ( at each end of clean range)
+qual_trim.c:444:1: warning: "/*" within comment [-Wcomment]
+ 444 | /*
+qual_trim.c:570:1: warning: "/*" within comment [-Wcomment]
+ 570 | /* Sets the window size and average probability of error allowed for the
+qual_trim.c:571:1: warning: "/*" within comment [-Wcomment]
+ 571 | /* terminal windows that "bracket" the candidate clean range.
+qual_trim.c:572:1: warning: "/*" within comment [-Wcomment]
+ 572 | /*
+qual_trim.c:573:1: warning: "/*" within comment [-Wcomment]
+ 573 | /* Globals used:
+qual_trim.c:574:1: warning: "/*" within comment [-Wcomment]
+ 574 | /* int bracket_window, (size of terminal window)
+qual_trim.c:575:1: warning: "/*" within comment [-Wcomment]
+ 575 | /* double bracket_error (allowable average prob. error in window)
+qual_trim.c:576:1: warning: "/*" within comment [-Wcomment]
+ 576 | /*
+qual_trim.c:588:1: warning: "/*" within comment [-Wcomment]
+ 588 | /* Finds the leftmost window, and the rightmost window, which meet the
+qual_trim.c:589:1: warning: "/*" within comment [-Wcomment]
+ 589 | /* specified error criterion. The purpose of this function is to bracket
+qual_trim.c:590:1: warning: "/*" within comment [-Wcomment]
+ 590 | /* the portion of the sequence that is of decent quality -- i.e. to
+qual_trim.c:591:1: warning: "/*" within comment [-Wcomment]
+ 591 | /* eliminate the really bad quality stuff that is often found on either
+qual_trim.c:592:1: warning: "/*" within comment [-Wcomment]
+ 592 | /* end. The beginning of the first matching window, and the end of the
+qual_trim.c:593:1: warning: "/*" within comment [-Wcomment]
+ 593 | /* last, bracket the sequence range that will be looked at to find the
qual_trim.c:594:1: warning: "/*" within comment [-Wcomment]
594 | /* final clean range.
qual_trim.c:595:1: warning: "/*" within comment [-Wcomment]
@@ -693,26 +754,15 @@
596 | /* This function is called before the multi_window_trim function, and
qual_trim.c:597:1: warning: "/*" within comment [-Wcomment]
597 | /* its results are used to limit the range of sequence that will be
-splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts]
- 17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)]
- | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
-splice.c:236:38: note: in expansion of macro 'Direc'
- 236 | left=Score(i-1,j)+left_penalty[Direc(i-1,j)];
- | ^~~~~
qual_trim.c:598:1: warning: "/*" within comment [-Wcomment]
598 | /* considered by that function.
qual_trim.c:599:1: warning: "/*" within comment [-Wcomment]
599 | /*
-splice.c:261:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
- 261 | while (direc=Direc(i,j))
- | ^~~~~
+abi.c: In function 'abi_code':
qual_trim.c:679:1: warning: "/*" within comment [-Wcomment]
679 | /* Determines the clean range. Calls multi_window_trim, which calls both
qual_trim.c:680:1: warning: "/*" within comment [-Wcomment]
680 | /* window_trim and average_error_trim.
-splice.c:277:15: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
- 277 | if (j>=span && j>=width-max_i || j>height/2)
- | ~~~~~~~~^~~~~~~~~~~~~~~~~
qual_trim.c:681:1: warning: "/*" within comment [-Wcomment]
681 | /*
qual_trim.c:682:1: warning: "/*" within comment [-Wcomment]
@@ -721,17 +771,20 @@
683 | /* int num_windows, (number of windows)
qual_trim.c:684:1: warning: "/*" within comment [-Wcomment]
684 | /* int *windows, (array of window sizes (largest to smallest))
+abi.c:85:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
+ 85 | return tmp;
+ | ^~~
qual_trim.c:685:1: warning: "/*" within comment [-Wcomment]
685 | /* double *err_limits, (array of maximum allowed average probability)
+abi.c:63:16: note: 'tmp' was declared here
+ 63 | register int tmp;
+ | ^~~
qual_trim.c:686:1: warning: "/*" within comment [-Wcomment]
686 | /* ( for each window size)
qual_trim.c:687:1: warning: "/*" within comment [-Wcomment]
687 | /* double max_avg_error, (maximum allowed average probability of error)
qual_trim.c:688:1: warning: "/*" within comment [-Wcomment]
688 | /* double end_limit, (maximum allowed probability of error for bases)
-lucy.c:793:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
- 793 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) {
- | ^
qual_trim.c:689:1: warning: "/*" within comment [-Wcomment]
689 | /* ( at each end of clean range)
qual_trim.c:690:1: warning: "/*" within comment [-Wcomment]
@@ -792,28 +845,11 @@
837 | /* ( at each end of clean range)
qual_trim.c:838:1: warning: "/*" within comment [-Wcomment]
838 | /*
-lucy.c:632:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 632 | fgets(buf, BUFFER_LENGTH, qul_file);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-vector.c: In function 'tag_code':
-vector.c:45:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
- 45 | return tmp;
- | ^~~
-vector.c:23:16: note: 'tmp' was declared here
- 23 | register int tmp;
- | ^~~
-abi.c: In function 'abi_code':
-abi.c:85:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
- 85 | return tmp;
- | ^~~
-abi.c:63:16: note: 'tmp' was declared here
- 63 | register int tmp;
- | ^~~
rm -f lucy
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -o lucy lucy.o qual_trim.o abi.o vector.o splice.o poly.o -lpthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed
make[1]: Leaving directory '/build/reproducible-path/lucy-1.20'
dh_auto_test
- rm -fr -- /tmp/dh-xdg-rundir-jbPKKcKz
+ rm -fr -- /tmp/dh-xdg-rundir-r5__Gnix
create-stamp debian/debhelper-build-stamp
dh_prep
rm -f -- debian/lucy.substvars
@@ -912,10 +948,10 @@
cd debian/.debhelper/lucy/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/md5sums
dh_builddeb
- dpkg-deb --root-owner-group --build debian/.debhelper/lucy/dbgsym-root ..
dpkg-deb --root-owner-group --build debian/lucy ..
-dpkg-deb: building package 'lucy-dbgsym' in '../lucy-dbgsym_1.20-6_arm64.deb'.
+ dpkg-deb --root-owner-group --build debian/.debhelper/lucy/dbgsym-root ..
dpkg-deb: building package 'lucy' in '../lucy_1.20-6_arm64.deb'.
+dpkg-deb: building package 'lucy-dbgsym' in '../lucy-dbgsym_1.20-6_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../lucy_1.20-6_arm64.buildinfo
dpkg-genchanges --build=binary -O../lucy_1.20-6_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -923,12 +959,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/3123384/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/3123384/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/1089113 and its subdirectories
-I: Current time: Wed Mar 5 06:28:33 -12 2025
-I: pbuilder-time-stamp: 1741199313
+I: removing directory /srv/workspace/pbuilder/3123384 and its subdirectories
+I: Current time: Wed Apr 8 14:52:27 +14 2026
+I: pbuilder-time-stamp: 1775609547