Diff of the two buildlogs: -- --- b1/build.log 2024-11-15 14:08:21.152068973 +0000 +++ b2/build.log 2024-11-15 14:10:19.090753166 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 18 08:29:26 -12 2025 -I: pbuilder-time-stamp: 1766089766 +I: Current time: Fri Dec 19 10:31:23 +14 2025 +I: pbuilder-time-stamp: 1766089883 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1190894/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/140539/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 18 20:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/140539/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/140539/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='123b1f95ceb444d4960fc1048e61ca57' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1190894' - PS1='# ' - PS2='> ' + INVOCATION_ID=a9d0e49df1354e1d8c5b11d1735c5ef1 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=140539 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ozDtK8JJ/pbuilderrc_oty0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ozDtK8JJ/b1 --logfile b1/build.log libslow5lib_0.7.0+dfsg-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ozDtK8JJ/pbuilderrc_wN18 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ozDtK8JJ/b2 --logfile b2/build.log libslow5lib_0.7.0+dfsg-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1190894/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/140539/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -236,7 +268,7 @@ Get: 100 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 101 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.44.0-2 [53.4 kB] -Fetched 59.7 MB in 0s (198 MB/s) +Fetched 59.7 MB in 0s (184 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20092 files and directories currently installed.) @@ -583,8 +615,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Dec 18 20:29:47 UTC 2025. -Universal Time is now: Thu Dec 18 20:29:47 UTC 2025. +Local time is now: Thu Dec 18 20:31:45 UTC 2025. +Universal Time is now: Thu Dec 18 20:31:45 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -675,7 +707,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libslow5lib_0.7.0+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/140539/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/140539/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libslow5lib_0.7.0+dfsg-3_source.changes dpkg-buildpackage: info: source package libslow5lib dpkg-buildpackage: info: source version 0.7.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -738,7 +774,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (1.1s) +-- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -780,39 +816,39 @@ cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/slow5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/build -make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/build make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' -[ 10%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o -[ 20%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o -[ 30%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o -[ 40%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o -/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c +make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' +[ 10%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o +/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c +[ 30%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o +[ 20%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o +[ 60%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o +[ 60%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o +[ 60%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c -/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c +/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c +/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_press.c.o -MF CMakeFiles/slow5.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c -[ 50%] Building C object CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -[ 60%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o -[ 70%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o -[ 80%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c +/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c +[ 80%] Building C object CMakeFiles/slow5_static.dir/src/slow5_misc.c.o +[ 80%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_press.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c -/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c -/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c -[ 90%] Linking C shared library libslow5.so -/usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1 -/usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd -/usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so -make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' -[100%] Linking C static library libslow5_static.a +/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c +[ 90%] Linking C static library libslow5_static.a /usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake -[100%] Built target slow5 /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 +[100%] Linking C shared library libslow5.so +/usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1 /usr/bin/ar qc libslow5_static.a CMakeFiles/slow5_static.dir/src/slow5.c.o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/ranlib libslow5_static.a make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' +/usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd [100%] Built target slow5_static +/usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so +make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' +[100%] Built target slow5 make[3]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-aarch64-linux-gnu' @@ -919,13 +955,13 @@ python3.12 lib.linux-aarch64-cpython-312 test_nonExistant_aux (python.test.TestAUX.test_nonExistant_aux) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example2.slow5.idx'. -18-Dec-25 08:31:07 - [WARNING]: get_read unknown aux name: noExistTest +19-Dec-25 10:33:07 - [WARNING]: get_read unknown aux name: noExistTest ok -test_read_id (python.test.TestAUX.test_read_id) ... 18-Dec-25 08:31:07 - [WARNING]: get_read unknown aux name: noExistTest +test_read_id (python.test.TestAUX.test_read_id) ... 19-Dec-25 10:33:07 - [WARNING]: get_read unknown aux name: noExistTest ok -test_read_number (python.test.TestAUX.test_read_number) ... 18-Dec-25 08:31:07 - [WARNING]: get_read unknown aux name: noExistTest +test_read_number (python.test.TestAUX.test_read_number) ... 19-Dec-25 10:33:07 - [WARNING]: get_read unknown aux name: noExistTest ok -test_start_mux (python.test.TestAUX.test_start_mux) ... 18-Dec-25 08:31:07 - [WARNING]: get_read unknown aux name: noExistTest +test_start_mux (python.test.TestAUX.test_start_mux) ... 19-Dec-25 10:33:07 - [WARNING]: get_read unknown aux name: noExistTest ok test_get_aux_names (python.test.TestAuxAll.test_get_aux_names) ... ok test_get_aux_types (python.test.TestAuxAll.test_get_aux_types) ... ok @@ -970,7 +1006,7 @@ test_get_reads_multi (python.test.testMultiThreadingRandom.test_get_reads_multi) ... ok ---------------------------------------------------------------------- -Ran 42 tests in 0.812s +Ran 42 tests in 0.394s OK r0 @@ -1069,16 +1105,16 @@ diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged -dpkg-shlibdeps: warning: symbol inflate used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol streamvbyte_decode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflate used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol streamvbyte_decode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateInit2_ used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake @@ -1089,11 +1125,11 @@ dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'python3-slow5' in '../python3-slow5_0.7.0+dfsg-3_arm64.deb'. dpkg-deb: building package 'libslow5-0t64' in '../libslow5-0t64_0.7.0+dfsg-3_arm64.deb'. dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_0.7.0+dfsg-3_arm64.deb'. -dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_0.7.0+dfsg-3_arm64.deb'. dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_0.7.0+dfsg-3_arm64.deb'. +dpkg-deb: building package 'python3-slow5' in '../python3-slow5_0.7.0+dfsg-3_arm64.deb'. +dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_0.7.0+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libslow5lib_0.7.0+dfsg-3_arm64.buildinfo dpkg-genchanges --build=binary -O../libslow5lib_0.7.0+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1101,12 +1137,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/140539/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/140539/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1190894 and its subdirectories -I: Current time: Thu Dec 18 08:31:19 -12 2025 -I: pbuilder-time-stamp: 1766089879 +I: removing directory /srv/workspace/pbuilder/140539 and its subdirectories +I: Current time: Fri Dec 19 10:33:17 +14 2025 +I: pbuilder-time-stamp: 1766089997