Diff of the two buildlogs: -- --- b1/build.log 2024-12-13 11:44:43.802524359 +0000 +++ b2/build.log 2024-12-13 13:01:15.433524290 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 12 22:16:16 -12 2024 -I: pbuilder-time-stamp: 1734084976 +I: Current time: Sat Dec 14 01:45:44 +14 2024 +I: pbuilder-time-stamp: 1734090344 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -38,52 +38,84 @@ dpkg-source: info: applying doxygen_mathjax_path.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2881144/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2981070/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 13 11:45 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2981070/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2981070/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='1fcd02917542418b9eb02e276ecb13ea' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2881144' - PS1='# ' - PS2='> ' + INVOCATION_ID=2cc261fac89843608049588f0bf15869 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2981070 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D2TyIO1N/pbuilderrc_Jdzv --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D2TyIO1N/b1 --logfile b1/build.log libsbml_5.20.2+dfsg-8.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D2TyIO1N/pbuilderrc_Yhoh --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D2TyIO1N/b2 --logfile b2/build.log libsbml_5.20.2+dfsg-8.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2881144/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2981070/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -938,7 +970,7 @@ Get: 777 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 778 http://deb.debian.org/debian trixie/main arm64 rdfind arm64 1.6.0-1+b2 [39.1 kB] Get: 779 http://deb.debian.org/debian trixie/main arm64 swig arm64 4.2.1-1+b1 [1355 kB] -Fetched 467 MB in 4s (117 MB/s) +Fetched 467 MB in 2s (224 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libkrb5support0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20082 files and directories currently installed.) @@ -3437,8 +3469,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 13 10:17:29 UTC 2024. -Universal Time is now: Fri Dec 13 10:17:29 UTC 2024. +Local time is now: Fri Dec 13 11:47:07 UTC 2024. +Universal Time is now: Fri Dec 13 11:47:07 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -4615,7 +4647,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libsbml-5.20.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libsbml_5.20.2+dfsg-8_source.changes +I: user script /srv/workspace/pbuilder/2981070/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2981070/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libsbml-5.20.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libsbml_5.20.2+dfsg-8_source.changes dpkg-buildpackage: info: source package libsbml dpkg-buildpackage: info: source version 5.20.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable @@ -4784,7 +4820,7 @@ To contact the developers directly, email libsbml-team@googlegroups.com - Configured on host 'codethink02-arm64' + Configured on host 'i-capture-the-hostname' host type = Linux host operating system = Linux 6.1.0-28-cloud-arm64 host CPU architecture = aarch64 @@ -4838,8 +4874,8 @@ -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- --- Configuring done (6.1s) --- Generating done (0.4s) +-- Configuring done (5.8s) +-- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: @@ -79867,7 +79903,98 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:105: warning: Unsupported xml/html tag found /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:105: warning: Found unknown command '@_tsbmlconstant_t' /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:106: warning: Unsupported xml/html tag <_tli_t> found -/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:106: warning: Found unknown command '@_tsbmlconstant_t' +ator.h... +Generating docs for file MultiMathMLConsistencyValidator.cpp... +Generating docs for file MultiMathMLConsistencyValidator.h... +Generating docs for file MultiSBMLError.h... +Generating docs for file MultiSBMLErrorTable.h... +Generating docs for file MultiValidator.cpp... +Generating docs for file MultiValidator.h... +Generating docs for file QualExtensionTypes.h... +Generating docs for file qualfwd.h... +Generating docs for file QualExtension.cpp... +Generating docs for file QualExtension.h... +Generating docs for file QualModelPlugin.cpp... +Generating docs for file QualModelPlugin.h... +Generating docs for file QualSBMLDocumentPlugin.cpp... +Generating docs for file QualSBMLDocumentPlugin.h... +Generating docs for file DefaultTerm.cpp... +Generating docs for file DefaultTerm.h... +Generating docs for file FunctionTerm.cpp... +Generating docs for file FunctionTerm.h... +Generating docs for file Input.cpp... +Generating docs for file Input.h... +Generating docs for file Output.cpp... +Generating docs for file Output.h... +Generating docs for file QualitativeSpecies.cpp... +Generating docs for file QualitativeSpecies.h... +Generating docs for file Transition.cpp... +Generating docs for file Transition.h... +Generating docs for file QualConsistencyValidator.cpp... +Generating docs for file QualConsistencyValidator.h... +Generating docs for file QualIdentifierConsistencyValidator.cpp... +Generating docs for file QualIdentifierConsistencyValidator.h... +Generating docs for file QualMathConsistencyValidator.cpp... +Generating docs for file QualMathConsistencyValidator.h... +Generating docs for file QualSBMLError.h... +Generating docs for file QualSBMLErrorTable.h... +Generating docs for file QualValidator.cpp... +Generating docs for file QualValidator.h... +Generating docs for file Parameter.cpp... +Generating docs for file Parameter.h... +Generating docs for file Priority.cpp... +Generating docs for file Priority.h... +Generating docs for file RateRule.cpp... +Generating docs for file RateRule.h... +Generating docs for file Reaction.cpp... +Generating docs for file Reaction.h... +Generating docs for file Rule.cpp... +Generating docs for file Rule.h... +Generating docs for file SBase.cpp... +Generating docs for file SBase.h... +Generating docs for file SBMLConstructorException.cpp... +Generating docs for file SBMLConstructorException.h... +Generating docs for file SBMLConvert.cpp... +Generating docs for file SBMLDocument.cpp... +Generating docs for file SBMLDocument.h... +Generating docs for file SBMLError.cpp... +Generating docs for file SBMLError.h... +Generating docs for file SBMLErrorLog.cpp... +Generating docs for file SBMLErrorLog.h... +Generating docs for file SBMLErrorTable.h... +Generating docs for file SBMLNamespaces.cpp... +Generating docs for file SBMLNamespaces.h... +Generating docs for file SBMLReader.cpp... +Generating docs for file SBMLReader.h... +Generating docs for file SBMLTransforms.cpp... +Generating docs for file SBMLTransforms.h... +Generating docs for file SBMLTypeCodes.cpp... +Generating docs for file SBMLTypeCodes.h... +Generating docs for file SBMLTypes.h... +Generating docs for file SBMLVisitor.cpp... +Generating docs for file SBMLVisitor.h... +Generating docs for file SBMLWriter.cpp... +Generating docs for file SBMLWriter.h... +Generating docs for file SBO.cpp... +Generating docs for file SBO.h... +Generating docs for file SimpleSpeciesReference.cpp... +Generating docs for file SimpleSpeciesReference.h... +Generating docs for file Species.cpp... +Generating docs for file Species.h... +Generating docs for file SpeciesReference.cpp... +Generating docs for file SpeciesReference.h... +Generating docs for file SpeciesType.cpp... +Generating docs for file SpeciesType.h... +Generating docs for file StoichiometryMath.cpp... +Generating docs for file StoichiometryMath.h... +Generating docs for file SyntaxChecker.cpp... +Generating docs for file SyntaxChecker.h... +Generating docs for file Trigger.cpp... +Generating docs for file Trigger.h... +Generating docs for file Unit.cpp... +Generating docs for file Unit.h... +Generating docs for file UnitDefinition.cpp... +Generating docs for f/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:106: warning: Found unknown command '@_tsbmlconstant_t' /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:106: warning: Unsupported xml/html tag <_tcode_t> found /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:106: warning: Unsupported xml/html tag found /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:106: warning: Found unknown command '@_tsbmlconstant_t' @@ -79996,98 +80123,7 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:513: warning: Found unknown command '@_tp_t' /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:504: warning: Found unknown command '@_tif_t' /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:505: warning: Found unknown command '@_tmemberof_t' -ator.h... -Generating docs for file MultiMathMLConsistencyValidator.cpp... -Generating docs for file MultiMathMLConsistencyValidator.h... -Generating docs for file MultiSBMLError.h... -Generating docs for file MultiSBMLErrorTable.h... -Generating docs for file MultiValidator.cpp... -Generating docs for file MultiValidator.h... -Generating docs for file QualExtensionTypes.h... -Generating docs for file qualfwd.h... -Generating docs for file QualExtension.cpp... -Generating docs for file QualExtension.h... -Generating docs for file QualModelPlugin.cpp... -Generating docs for file QualModelPlugin.h... -Generating docs for file QualSBMLDocumentPlugin.cpp... -Generating docs for file QualSBMLDocumentPlugin.h... -Generating docs for file DefaultTerm.cpp... -Generating docs for file DefaultTerm.h... -Generating docs for file FunctionTerm.cpp... -Generating docs for file FunctionTerm.h... -Generating docs for file Input.cpp... -Generating docs for file Input.h... -Generating docs for file Output.cpp... -Generating docs for file Output.h... -Generating docs for file QualitativeSpecies.cpp... -Generating docs for file QualitativeSpecies.h... -Generating docs for file Transition.cpp... -Generating docs for file Transition.h... -Generating docs for file QualConsistencyValidator.cpp... -Generating docs for file QualConsistencyValidator.h... -Generating docs for file QualIdentifierConsistencyValidator.cpp... -Generating docs for file QualIdentifierConsistencyValidator.h... -Generating docs for file QualMathConsistencyValidator.cpp... -Generating docs for file QualMathConsistencyValidator.h... -Generating docs for file QualSBMLError.h... -Generating docs for file QualSBMLErrorTable.h... -Generating docs for file QualValidator.cpp... -Generating docs for file QualValidator.h... -Generating docs for file Parameter.cpp... -Generating docs for file Parameter.h... -Generating docs for file Priority.cpp... -Generating docs for file Priority.h... -Generating docs for file RateRule.cpp... -Generating docs for file RateRule.h... -Generating docs for file Reaction.cpp... -Generating docs for file Reaction.h... -Generating docs for file Rule.cpp... -Generating docs for file Rule.h... -Generating docs for file SBase.cpp... -Generating docs for file SBase.h... -Generating docs for file SBMLConstructorException.cpp... -Generating docs for file SBMLConstructorException.h... -Generating docs for file SBMLConvert.cpp... -Generating docs for file SBMLDocument.cpp... -Generating docs for file SBMLDocument.h... -Generating docs for file SBMLError.cpp... -Generating docs for file SBMLError.h... -Generating docs for file SBMLErrorLog.cpp... -Generating docs for file SBMLErrorLog.h... -Generating docs for file SBMLErrorTable.h... -Generating docs for file SBMLNamespaces.cpp... -Generating docs for file SBMLNamespaces.h... -Generating docs for file SBMLReader.cpp... -Generating docs for file SBMLReader.h... -Generating docs for file SBMLTransforms.cpp... -Generating docs for file SBMLTransforms.h... -Generating docs for file SBMLTypeCodes.cpp... -Generating docs for file SBMLTypeCodes.h... -Generating docs for file SBMLTypes.h... -Generating docs for file SBMLVisitor.cpp... -Generating docs for file SBMLVisitor.h... -Generating docs for file SBMLWriter.cpp... -Generating docs for file SBMLWriter.h... -Generating docs for file SBO.cpp... -Generating docs for file SBO.h... -Generating docs for file SimpleSpeciesReference.cpp... -Generating docs for file SimpleSpeciesReference.h... -Generating docs for file Species.cpp... -Generating docs for file Species.h... -Generating docs for file SpeciesReference.cpp... -Generating docs for file SpeciesReference.h... -Generating docs for file SpeciesType.cpp... -Generating docs for file SpeciesType.h... -Generating docs for file StoichiometryMath.cpp... -Generating docs for file StoichiometryMath.h... -Generating docs for file SyntaxChecker.cpp... -Generating docs for file SyntaxChecker.h... -Generating docs for file Trigger.cpp... -Generating docs for file Trigger.h... -Generating docs for file Unit.cpp... -Generating docs for file Unit.h... -Generating docs for file UnitDefinition.cpp... -Generating docs for f/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:506: warning: Found unknown command '@_tendif_t' +/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:506: warning: Found unknown command '@_tendif_t' /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:550: warning: Unsupported xml/html tag <_tcode_t> found /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:550: warning: Unsupported xml/html tag found /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:437: warning: Found unknown command '@_tendcond_t' @@ -148202,7 +148238,6 @@ Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h... Pa/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.cpp:413: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp:973: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. -/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. rsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h... Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp... Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp... @@ -148237,7 +148272,8 @@ Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h... Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h... Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp... -Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:960: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. +Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. +/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:960: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file. /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1242: warning: the \endcond does not have a corresponding \cond in this file 2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp... Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h... @@ -155665,28 +155701,6 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:266: warning: included file stripPackage.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:269: warning: included file translateMath.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:272: warning: included file unsetAnnotation.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:275: warning: included file unsetNotes.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:276: warning: included file validateSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:278: warning: included file groups_example1.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:280: warning: included file flattenModel.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:285: warning: included file fbc_example1.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:289: warning: included file convertCobraToFbc.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:293: warning: included file convertFbcToCobra.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:295: warning: included file promoteParameters.py is not found. Check your EXAMPLE_PATH -path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt... Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt... Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-news.txt... @@ -155773,7 +155787,29 @@ Generating docs for example callExternalValidator.py... Generating docs for example convertSBML.py... Generating docs for example createExampleSBML.py... -Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:300: warning: included file convertLayout.py is not found. Check your EXAMPLE_PATH +Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:266: warning: included file stripPackage.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:269: warning: included file translateMath.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:272: warning: included file unsetAnnotation.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:275: warning: included file unsetNotes.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:276: warning: included file validateSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:278: warning: included file groups_example1.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:280: warning: included file flattenModel.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:285: warning: included file fbc_example1.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:289: warning: included file convertCobraToFbc.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:293: warning: included file convertFbcToCobra.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:295: warning: included file promoteParameters.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:300: warning: included file convertLayout.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:302: warning: included file example1.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:305: warning: included file example1-L3.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:308: warning: included file qual_example1.py is not found. Check your EXAMPLE_PATH @@ -155948,7 +155984,6 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:788: warning: unable to resolve link to 'libsbml#AST_DISTRIB_FUNCTION_UNIFORM' for \link command /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:3330: warning: explicit link request to 'SBMLTypeCode_t' could not be resolved /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2870: warning: found subsection command (id: 'sbp-identify') outside of section context! -/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:3012: warning: found subsection command (id: 'sdp-identify') outside of section context! r example echoSBML.py... Generating docs for example getAllElementsWithNotes.py... Generating docs for example printAnnotation.py... @@ -156031,7 +156066,8 @@ Generating docs for compound doc_extension_layout_plugin_is_special... Generating docs for compound doc_extension_sbaseextensionpoint... Generating docs for compound doc_extension_sbaseplugin... -Gene/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2277: warning: found subsection command (id: 'ext-getpackagename') outside of section context! +Gene/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:3012: warning: found subsection command (id: 'sdp-identify') outside of section context! +/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2277: warning: found subsection command (id: 'ext-getpackagename') outside of section context! /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2505: warning: explicit link request to 'SBMLLayoutTypeCode_t' could not be resolved /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2575: warning: explicit link request to 'SBMLLayoutTypeCode_t' could not be resolved /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:3195: warning: found subsection command (id: 'sen-identify') outside of section context! @@ -157267,25 +157303,6 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:266: warning: included file stripPackage.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:269: warning: included file translateMath.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:272: warning: included file unsetAnnotation.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:275: warning: included file unsetNotes.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:276: warning: included file validateSBML.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:278: warning: included file groups_example1.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:280: warning: included file flattenModel.py is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:285: warning: included file fbc_example1.py is not found. Check your EXAMPLE_PATH -path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt... Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt... Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-news.txt... @@ -157372,7 +157389,26 @@ Generating docs for example callExternalValidator.py... Generating docs for example convertSBML.py... Generating docs for example createExampleSBML.py... -Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:289: warning: included file convertCobraToFbc.py is not found. Check your EXAMPLE_PATH +Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:266: warning: included file stripPackage.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:269: warning: included file translateMath.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:272: warning: included file unsetAnnotation.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:275: warning: included file unsetNotes.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:276: warning: included file validateSBML.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:278: warning: included file groups_example1.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:280: warning: included file flattenModel.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:285: warning: included file fbc_example1.py is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:289: warning: included file convertCobraToFbc.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:293: warning: included file convertFbcToCobra.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:295: warning: included file promoteParameters.py is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:300: warning: included file convertLayout.py is not found. Check your EXAMPLE_PATH @@ -157550,7 +157586,6 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:788: warning: unable to resolve link to 'libsbml#AST_DISTRIB_FUNCTION_UNIFORM' for \link command /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:3330: warning: explicit link request to 'SBMLTypeCode_t' could not be resolved /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2870: warning: found subsection command (id: 'sbp-identify') outside of section context! -/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:3012: warning: found subsection command (id: 'sdp-identify') outside of section context! r example echoSBML.py... Generating docs for example getAllElementsWithNotes.py... Generating docs for example printAnnotation.py... @@ -157633,7 +157668,8 @@ Generating docs for compound doc_extension_layout_plugin_is_special... Generating docs for compound doc_extension_sbaseextensionpoint... Generating docs for compound doc_extension_sbaseplugin... -Gene/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2277: warning: found subsection command (id: 'ext-getpackagename') outside of section context! +Gene/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:3012: warning: found subsection command (id: 'sdp-identify') outside of section context! +/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2277: warning: found subsection command (id: 'ext-getpackagename') outside of section context! /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2505: warning: explicit link request to 'SBMLLayoutTypeCode_t' could not be resolved /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:2575: warning: explicit link request to 'SBMLLayoutTypeCode_t' could not be resolved /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/common/common-documentation.h:3195: warning: found subsection command (id: 'sen-identify') outside of section context! @@ -163523,14 +163559,6 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH l/packages/qual/validator/QualSBMLError.h... Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h... Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h... @@ -163625,7 +163653,15 @@ Generating docs for example translateMath.cpp... Generating docs for example unsetAnnotation.cpp... Generating docs for example unsetNotes.cpp... -Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH +Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:376: warning: included file SBMLHttpResolverExample.cpp is not found. Check your EXAMPLE_PATH @@ -176072,17 +176108,6 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH l/packages/qual/validator/QualSBMLError.h... Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h... Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h... @@ -176177,7 +176202,18 @@ Generating docs for example translateMath.cpp... Generating docs for example unsetAnnotation.cpp... Generating docs for example unsetNotes.cpp... -Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:376: warning: included file SBMLHttpResolverExample.cpp is not found. Check your EXAMPLE_PATH +Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:376: warning: included file SBMLHttpResolverExample.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:378: warning: included file promoteParameters.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:383: warning: included file setNamesFromIds.cpp is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:387: warning: included file addLayout.cpp is not found. Check your EXAMPLE_PATH @@ -179318,10 +179354,6 @@ /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:268: warning: included file unsetAnnotation.cs is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:271: warning: included file unsetNotes.cs is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:272: warning: included file validateSBML.cs is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:274: warning: included file FlattenModel.cs is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:277: warning: included file SpecExample1.cs is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:280: warning: included file SpecExample2.cs is not found. Check your EXAMPLE_PATH -/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:283: warning: included file SpecExample3.cs is not found. Check your EXAMPLE_PATH l-5.20.2+dfsg/docs/src/libsbml-news.txt... Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-news.txt... Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-other.txt... @@ -179416,7 +179448,11 @@ Generating docs for example unsetAnnotation.cs... Generating docs for example unsetNotes.cs... Generating docs for example validateSBML.cs... -Generating docs for exa/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:286: warning: included file SpecExample4.cs is not found. Check your EXAMPLE_PATH +Generating docs for exa/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:274: warning: included file FlattenModel.cs is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:277: warning: included file SpecExample1.cs is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:280: warning: included file SpecExample2.cs is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:283: warning: included file SpecExample3.cs is not found. Check your EXAMPLE_PATH +/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:286: warning: included file SpecExample4.cs is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:291: warning: included file fbc_example1.cs is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:295: warning: included file convertCobraToFbc.cs is not found. Check your EXAMPLE_PATH /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:299: warning: included file convertFbcToCobra.cs is not found. Check your EXAMPLE_PATH @@ -179609,7 +179645,7 @@ 1: TestMultipleNamespaces 1: SBMLCompCheckConsistency 1: 100%: Checks: 14, Failures: 0, Errors: 0 - 1/67 Test #1: test_comp_extensions_run ...................... Passed 0.51 sec + 1/67 Test #1: test_comp_extensions_run ...................... Passed 0.39 sec test 2 Start 2: test_comp_sbase_run @@ -179630,7 +179666,7 @@ 2: comp_sBaseRef 2: comp_submodel 2: 100%: Checks: 105, Failures: 0, Errors: 0 - 2/67 Test #2: test_comp_sbase_run ........................... Passed 1.40 sec + 2/67 Test #2: test_comp_sbase_run ........................... Passed 0.30 sec test 3 Start 3: test_comp_util_run @@ -179648,7 +179684,7 @@ 3: SBMLCompFlatteningNewFlags 3: SBMLCompFlatteningConverterStripPackage 3: 100%: Checks: 365, Failures: 0, Errors: 0 - 3/67 Test #3: test_comp_util_run ............................ Passed 7.38 sec + 3/67 Test #3: test_comp_util_run ............................ Passed 4.81 sec test 4 Start 4: test_comp_validator_run @@ -179668,7 +179704,7 @@ 4: 100%: Checks: 14, Failures: 0 4: Testing Unit Consistency Constraints (10500 - 10599). 4: 100%: Checks: 22, Failures: 0 - 4/67 Test #4: test_comp_validator_run ....................... Passed 0.47 sec + 4/67 Test #4: test_comp_validator_run ....................... Passed 0.28 sec test 5 Start 5: test_sbml_package_fbc_run @@ -179682,7 +179718,7 @@ 5: ReadFbcExtension 5: FbcAssociation 5: 100%: Checks: 38, Failures: 0, Errors: 0 - 5/67 Test #5: test_sbml_package_fbc_run ..................... Passed 0.55 sec + 5/67 Test #5: test_sbml_package_fbc_run ..................... Passed 0.18 sec test 6 Start 6: test_fbc_validator_run @@ -179700,7 +179736,7 @@ 6: 100%: Checks: 248, Failures: 0 6: Testing Id Consistency Constraints (10300 - 10399). 6: 100%: Checks: 13, Failures: 0 - 6/67 Test #6: test_fbc_validator_run ........................ Passed 0.33 sec + 6/67 Test #6: test_fbc_validator_run ........................ Passed 0.29 sec test 7 Start 7: test_extension_package_groups_run @@ -179714,7 +179750,7 @@ 7: ReadGroupsExtension 7: GroupsModelPlugin 7: 100%: Checks: 25, Failures: 0, Errors: 0 - 7/67 Test #7: test_extension_package_groups_run ............. Passed 0.40 sec + 7/67 Test #7: test_extension_package_groups_run ............. Passed 0.08 sec test 8 Start 8: test_groups_validator_run @@ -179732,7 +179768,7 @@ 8: 100%: Checks: 95, Failures: 0 8: Testing Id Consistency Constraints (10300 - 10399). 8: 100%: Checks: 11, Failures: 0 - 8/67 Test #8: test_groups_validator_run ..................... Passed 0.06 sec + 8/67 Test #8: test_groups_validator_run ..................... Passed 0.05 sec test 9 Start 9: test_l3v2extendedmath_validator_run @@ -179750,7 +179786,7 @@ 9: 100%: Checks: 4, Failures: 0 9: Testing Unit Consistency Constraints (10500 - 10599). 9: 100%: Checks: 6, Failures: 0 - 9/67 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.04 sec + 9/67 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.02 sec test 10 Start 10: test_extension_package_l3v2extendedmath_run @@ -179764,7 +179800,7 @@ 10: ReadL3v2EMExtension 10: ReadWriteL3v2Infix 10: 100%: Checks: 18, Failures: 0, Errors: 0 -10/67 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.31 sec +10/67 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.06 sec test 11 Start 11: test_sbml_package_layout_run @@ -179793,7 +179829,7 @@ 11: SBMLHandler 11: LayoutWriting 11: 100%: Checks: 288, Failures: 0, Errors: 0 -11/67 Test #11: test_sbml_package_layout_run .................. Passed 4.46 sec +11/67 Test #11: test_sbml_package_layout_run .................. Passed 0.84 sec test 12 Start 12: test_layout_validator_run @@ -179811,7 +179847,7 @@ 12: 100%: Checks: 223, Failures: 0 12: Testing Id Consistency Constraints (10300 - 10399). 12: 100%: Checks: 18, Failures: 0 -12/67 Test #12: test_layout_validator_run ..................... Passed 0.40 sec +12/67 Test #12: test_layout_validator_run ..................... Passed 0.33 sec test 13 Start 13: test_extension_package_qual_run @@ -179825,7 +179861,7 @@ 13: ReadQualExtension 13: GetAllElements 13: 100%: Checks: 20, Failures: 0, Errors: 0 -13/67 Test #13: test_extension_package_qual_run ............... Passed 0.04 sec +13/67 Test #13: test_extension_package_qual_run ............... Passed 0.06 sec test 14 Start 14: test_sbml_package_qual_run @@ -179843,7 +179879,7 @@ 14: ListOfFunctionTerms 14: CopyAndClone 14: 100%: Checks: 73, Failures: 0, Errors: 0 -14/67 Test #14: test_sbml_package_qual_run .................... Passed 0.85 sec +14/67 Test #14: test_sbml_package_qual_run .................... Passed 0.16 sec test 15 Start 15: test_qual_validator_run @@ -179863,7 +179899,7 @@ 15: 100%: Checks: 4, Failures: 0 15: Testing Math Consistency Constraints (10200 - 10299). 15: 100%: Checks: 3, Failures: 0 -15/67 Test #15: test_qual_validator_run ....................... Passed 0.07 sec +15/67 Test #15: test_qual_validator_run ....................... Passed 0.11 sec test 16 Start 16: test_sbml_package_render_run @@ -179902,7 +179938,7 @@ 16: RenderReading 16: RenderWriting 16: 100%: Checks: 136, Failures: 0, Errors: 0 -16/67 Test #16: test_sbml_package_render_run .................. Passed 2.36 sec +16/67 Test #16: test_sbml_package_render_run .................. Passed 0.88 sec test 17 Start 17: test_render_validator_run @@ -179918,7 +179954,7 @@ 17: 17: Testing General XML Consistency Constraints (20000 - 29999). 17: 100%: Checks: 111, Failures: 0 -17/67 Test #17: test_render_validator_run ..................... Passed 0.09 sec +17/67 Test #17: test_render_validator_run ..................... Passed 0.11 sec test 18 Start 18: test_sbml_annotation_run @@ -179945,7 +179981,7 @@ 18: RDFAnnotationV4 18: UnusualRDFAnnotation 18: 100%: Checks: 193, Failures: 0, Errors: 0 -18/67 Test #18: test_sbml_annotation_run ...................... Passed 2.05 sec +18/67 Test #18: test_sbml_annotation_run ...................... Passed 0.69 sec test 19 Start 19: test_sbml_conversion_run @@ -179967,7 +180003,7 @@ 19: RateOfConverter 19: SBMLRateRuleConverter 19: 100%: Checks: 188, Failures: 0, Errors: 0 -19/67 Test #19: test_sbml_conversion_run ...................... Passed 2.53 sec +19/67 Test #19: test_sbml_conversion_run ...................... Passed 1.03 sec test 20 Start 20: test_sbml_extension_run @@ -179986,7 +180022,7 @@ 20: SBMLExtensionRegistry 20: TestUnknownPackages 20: 100%: Checks: 30, Failures: 0, Errors: 0 -20/67 Test #20: test_sbml_extension_run ....................... Passed 0.18 sec +20/67 Test #20: test_sbml_extension_run ....................... Passed 0.08 sec test 21 Start 21: test_sbml_math_run @@ -180014,7 +180050,7 @@ 21: TestInferRnFunctions 21: TestDerivFunctions 21: 100%: Checks: 739, Failures: 0, Errors: 0 -21/67 Test #21: test_sbml_math_run ............................ Passed 10.24 sec +21/67 Test #21: test_sbml_math_run ............................ Passed 1.55 sec test 22 Start 22: test_sbml_sbml_run @@ -180130,7 +180166,7 @@ 22: SBaseIdName 22: Generic Attribute Functions 22: 100%: Checks: 1746, Failures: 0, Errors: 0 -22/67 Test #22: test_sbml_sbml_run ............................ Passed 22.72 sec +22/67 Test #22: test_sbml_sbml_run ............................ Passed 4.73 sec test 23 Start 23: test_sbml_units_run @@ -180151,7 +180187,7 @@ 23: UnitFormulaFormatter3 23: DerivedUnitDefinitionUndefined 23: 100%: Checks: 178, Failures: 0, Errors: 0 -23/67 Test #23: test_sbml_units_run ........................... Passed 2.54 sec +23/67 Test #23: test_sbml_units_run ........................... Passed 1.24 sec test 24 Start 24: test_sbml_util_run @@ -180164,7 +180200,7 @@ 24: Stack 24: StringBuffer 24: 100%: Checks: 57, Failures: 0, Errors: 0 -24/67 Test #24: test_sbml_util_run ............................ Passed 0.85 sec +24/67 Test #24: test_sbml_util_run ............................ Passed 0.07 sec test 25 Start 25: test_sbml_validator_run @@ -180241,7 +180277,7 @@ 25: 100%: Checks: 30, Failures: 0 25: Testing Modeling Practice Constraints (80000 - 89999). 25: 100%: Checks: 56, Failures: 0 -25/67 Test #25: test_sbml_validator_run ....................... Passed 2.60 sec +25/67 Test #25: test_sbml_validator_run ....................... Passed 2.24 sec test 26 Start 26: test_sbml_xml_run @@ -180263,11 +180299,11 @@ 26: XMLErrorLog 26: XMLInputStream 26: XMLOutputStream -26: +26: 26: XMLAttributesC 26: XMLExceptions 26: 100%: Checks: 131, Failures: 0, Errors: 0 -26/67 Test #26: test_sbml_xml_run ............................. Passed 1.75 sec +26/67 Test #26: test_sbml_xml_run ............................. Passed 0.27 sec test 27 Start 27: test_csharp_bindings @@ -180281,7 +180317,7 @@ 27: ........................................................................................................................................................................................................................... 27: All tests passed. 27: -27/67 Test #27: test_csharp_bindings .......................... Passed 0.44 sec +27/67 Test #27: test_csharp_bindings .......................... Passed 0.32 sec test 28 Start 28: test_csharp_bindings_full @@ -180295,14 +180331,14 @@ 28: Running the tests with: 28: Data Directory: /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/test/test-data 28: -28: ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... +28: ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28: ..................................... 28: 28: Total Number of Tests 1830, failures 0 28: 28: All tests passed. 28: -28/67 Test #28: test_csharp_bindings_full ..................... Passed 1.90 sec +28/67 Test #28: test_csharp_bindings_full ..................... Passed 1.10 sec test 29 Start 29: test_java_binding @@ -180311,8 +180347,8 @@ 29: Environment variables: 29: LD_LIBRARY_PATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/java: 29: Test timeout computed to be: 3000 -29: .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... -29/67 Test #29: test_java_binding ............................. Passed 1.23 sec +29: ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... +29/67 Test #29: test_java_binding ............................. Passed 0.56 sec test 30 Start 30: test_java_printversion @@ -180320,7 +180356,7 @@ 30: Working Directory: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/java 30: Test timeout computed to be: 3000 30: . -30/67 Test #30: test_java_printversion ........................ Passed 0.43 sec +30/67 Test #30: test_java_printversion ........................ Passed 0.13 sec test 31 Start 31: test_perl_binding @@ -180371,9 +180407,9 @@ 31: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/perl/t/07__TestModelHistory.t .......... ok 31: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok 31: All tests successful. -31: Files=41, Tests=3364, 9 wallclock secs ( 0.16 usr 0.10 sys + 4.43 cusr 0.71 csys = 5.40 CPU) +31: Files=41, Tests=3364, 5 wallclock secs ( 0.37 usr 0.09 sys + 4.48 cusr 0.79 csys = 5.73 CPU) 31: Result: PASS -31/67 Test #31: test_perl_binding ............................. Passed 9.16 sec +31/67 Test #31: test_perl_binding ............................. Passed 5.54 sec test 32 Start 32: test_python_binding @@ -180388,13 +180424,13 @@ 32: re_libxml = re.compile('^ USE_LIBXML \s* = \s* 1', re.X) 32: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/python/test/sbml/TestReadSBML.py:51: SyntaxWarning: invalid escape sequence '\s' 32: re_xerces = re.compile('^ USE_XERCES \s* = \s* 1', re.X) -32: ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... +32: ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 32: ................................................................................................................................................................................................................................................................................................................................................................................................................ 32: ---------------------------------------------------------------------- -32: Ran 1819 tests in 0.312s +32: Ran 1819 tests in 0.292s 32: 32: OK -32/67 Test #32: test_python_binding ........................... Passed 1.65 sec +32/67 Test #32: test_python_binding ........................... Passed 1.17 sec test 33 Start 33: test_python_printversion @@ -180403,7 +180439,7 @@ 33: Environment variables: 33: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 33: Test timeout computed to be: 3000 -33/67 Test #33: test_python_printversion ...................... Passed 0.18 sec +33/67 Test #33: test_python_printversion ...................... Passed 0.17 sec test 34 Start 34: test_python_addCVTerms @@ -180412,7 +180448,7 @@ 34: Environment variables: 34: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 34: Test timeout computed to be: 3000 -34/67 Test #34: test_python_addCVTerms ........................ Passed 0.22 sec +34/67 Test #34: test_python_addCVTerms ........................ Passed 0.17 sec test 35 Start 35: test_python_addingEvidenceCodes_1 @@ -180421,7 +180457,7 @@ 35: Environment variables: 35: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 35: Test timeout computed to be: 3000 -35/67 Test #35: test_python_addingEvidenceCodes_1 ............. Passed 0.27 sec +35/67 Test #35: test_python_addingEvidenceCodes_1 ............. Passed 0.13 sec test 36 Start 36: test_python_addingEvidenceCodes_2 @@ -180430,7 +180466,7 @@ 36: Environment variables: 36: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 36: Test timeout computed to be: 3000 -36/67 Test #36: test_python_addingEvidenceCodes_2 ............. Passed 0.30 sec +36/67 Test #36: test_python_addingEvidenceCodes_2 ............. Passed 0.18 sec test 37 Start 37: test_python_addModelHistory @@ -180443,7 +180479,7 @@ 37: Set created date: succeeded 37: Set modified date: succeeded 37: Set model history: unknown -37/67 Test #37: test_python_addModelHistory ................... Passed 0.29 sec +37/67 Test #37: test_python_addModelHistory ................... Passed 0.13 sec test 38 Start 38: test_python_append_to_note @@ -180460,7 +180496,7 @@ 38: Body after change: 38: 38:

Some notes

a new note -38/67 Test #38: test_python_append_to_note .................... Passed 0.38 sec +38/67 Test #38: test_python_append_to_note .................... Passed 0.19 sec test 39 Start 39: test_python_appendAnnotation @@ -180469,7 +180505,7 @@ 39: Environment variables: 39: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 39: Test timeout computed to be: 3000 -39/67 Test #39: test_python_appendAnnotation .................. Passed 0.33 sec +39/67 Test #39: test_python_appendAnnotation .................. Passed 0.19 sec test 40 Start 40: test_python_convertSBML @@ -180482,7 +180518,7 @@ 40: 40: Conversion completed. 40: -40/67 Test #40: test_python_convertSBML ....................... Passed 0.33 sec +40/67 Test #40: test_python_convertSBML ....................... Passed 0.19 sec test 41 Start 41: test_python_createExampleSBML @@ -180500,7 +180536,7 @@ 41: Notice: encountered 1 validation warning in model 'functionExample'. 41: 41: Wrote file 'functiondef.xml' -41/67 Test #41: test_python_createExampleSBML ................. Passed 0.37 sec +41/67 Test #41: test_python_createExampleSBML ................. Passed 0.21 sec test 42 Start 42: test_python_createSimpleModel @@ -180552,7 +180588,7 @@ 42: 42: 42: -42/67 Test #42: test_python_createSimpleModel ................. Passed 0.36 sec +42/67 Test #42: test_python_createSimpleModel ................. Passed 0.19 sec test 43 Start 43: test_python_echoSBML @@ -180562,7 +180598,7 @@ 43: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 43: Test timeout computed to be: 3000 43: [OK] Echoed /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml -43/67 Test #43: test_python_echoSBML .......................... Passed 0.29 sec +43/67 Test #43: test_python_echoSBML .......................... Passed 0.19 sec test 44 Start 44: test_python_evaluateCustomMath @@ -180572,7 +180608,7 @@ 44: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 44: Test timeout computed to be: 3000 44: 2*3+4 = 10.0 -44/67 Test #44: test_python_evaluateCustomMath ................ Passed 0.34 sec +44/67 Test #44: test_python_evaluateCustomMath ................ Passed 0.14 sec test 45 Start 45: test_python_getAllElementsWithNotes @@ -180583,11 +180619,11 @@ 45: Test timeout computed to be: 3000 45: 45: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml -45: read time (ms): 1.06103515625 +45: read time (ms): 1.272705078125 45: searching ......: -45: search time (ms): 0.17626953125 +45: search time (ms): 0.151611328125 45: elements with notes: 0 -45/67 Test #45: test_python_getAllElementsWithNotes ........... Passed 0.34 sec +45/67 Test #45: test_python_getAllElementsWithNotes ........... Passed 0.18 sec test 46 Start 46: test_python_inlineInitialAssignments @@ -180596,7 +180632,7 @@ 46: Environment variables: 46: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 46: Test timeout computed to be: 3000 -46/67 Test #46: test_python_inlineInitialAssignments .......... Passed 0.33 sec +46/67 Test #46: test_python_inlineInitialAssignments .......... Passed 0.13 sec test 47 Start 47: test_python_printAnnotation @@ -180607,7 +180643,7 @@ 47: Test timeout computed to be: 3000 47: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml 47: -47/67 Test #47: test_python_printAnnotation ................... Passed 0.21 sec +47/67 Test #47: test_python_printAnnotation ................... Passed 0.18 sec test 48 Start 48: test_python_printMath @@ -180623,7 +180659,7 @@ 48: 48: 48: -48/67 Test #48: test_python_printMath ......................... Passed 0.19 sec +48/67 Test #48: test_python_printMath ......................... Passed 0.18 sec test 49 Start 49: test_python_printRegisteredPackages @@ -180643,7 +180679,7 @@ 49: qual 49: 49: -49/67 Test #49: test_python_printRegisteredPackages ........... Passed 0.31 sec +49/67 Test #49: test_python_printRegisteredPackages ........... Passed 0.19 sec test 50 Start 50: test_python_printSBML @@ -180669,7 +180705,7 @@ 50: events: 0 50: 50: -50/67 Test #50: test_python_printSBML ......................... Passed 0.20 sec +50/67 Test #50: test_python_printSBML ......................... Passed 0.19 sec test 51 Start 51: test_python_printsupported @@ -180690,7 +180726,7 @@ 51: SBML Level: 3 Version: 1 51: SBML Level: 3 Version: 2 51: -51/67 Test #51: test_python_printsupported .................... Passed 0.15 sec +51/67 Test #51: test_python_printsupported .................... Passed 0.19 sec test 52 Start 52: test_python_printUnits @@ -180710,7 +180746,7 @@ 52: Reaction 1: 52: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 52: undeclared units: no -52/67 Test #52: test_python_printUnits ........................ Passed 0.16 sec +52/67 Test #52: test_python_printUnits ........................ Passed 0.19 sec test 53 Start 53: test_python_promoteParameters @@ -180720,7 +180756,7 @@ 53: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 53: Test timeout computed to be: 3000 53: [OK] wrote promoteParameters.out.xml -53/67 Test #53: test_python_promoteParameters ................. Passed 0.15 sec +53/67 Test #53: test_python_promoteParameters ................. Passed 0.14 sec test 54 Start 54: test_python_readSBML @@ -180732,10 +180768,10 @@ 54: 54: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml 54: file size: 3930 -54: read time (ms): 1.1937618255615234 +54: read time (ms): 0.9870529174804688 54: validation error(s): 0 54: -54/67 Test #54: test_python_readSBML .......................... Passed 0.16 sec +54/67 Test #54: test_python_readSBML .......................... Passed 0.18 sec test 55 Start 55: test_python_replaceOneFD @@ -180744,7 +180780,7 @@ 55: Environment variables: 55: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 55: Test timeout computed to be: 3000 -55/67 Test #55: test_python_replaceOneFD ...................... Passed 0.15 sec +55/67 Test #55: test_python_replaceOneFD ...................... Passed 0.14 sec test 56 Start 56: test_python_setIdFromNames @@ -180755,11 +180791,11 @@ 56: Test timeout computed to be: 3000 56: 56: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml -56: read time (ms): 0.923095703125 -56: rename time (ms): 0.100341796875 -56: write time (ms): 0.293212890625 +56: read time (ms): 0.94287109375 +56: rename time (ms): 0.092529296875 +56: write time (ms): 0.28857421875 56: -56/67 Test #56: test_python_setIdFromNames .................... Passed 0.16 sec +56/67 Test #56: test_python_setIdFromNames .................... Passed 0.19 sec test 57 Start 57: test_python_setNamesFromIds @@ -180770,11 +180806,11 @@ 57: Test timeout computed to be: 3000 57: 57: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml -57: read time (ms): 0.989501953125 -57: rename time (ms): 0.220458984375 -57: write time (ms): 0.3095703125 +57: read time (ms): 0.943603515625 +57: rename time (ms): 0.21484375 +57: write time (ms): 0.29052734375 57: -57/67 Test #57: test_python_setNamesFromIds ................... Passed 0.16 sec +57/67 Test #57: test_python_setNamesFromIds ................... Passed 0.15 sec test 58 Start 58: test_python_unsetAnnotation @@ -180783,7 +180819,7 @@ 58: Environment variables: 58: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 58: Test timeout computed to be: 3000 -58/67 Test #58: test_python_unsetAnnotation ................... Passed 0.16 sec +58/67 Test #58: test_python_unsetAnnotation ................... Passed 0.18 sec test 59 Start 59: test_python_unsetNotes @@ -180792,7 +180828,7 @@ 59: Environment variables: 59: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 59: Test timeout computed to be: 3000 -59/67 Test #59: test_python_unsetNotes ........................ Passed 0.16 sec +59/67 Test #59: test_python_unsetNotes ........................ Passed 0.18 sec test 60 Start 60: test_python_validateSBML @@ -180804,15 +180840,15 @@ 60: --------------------------------------------------------------------------- 60: filename : /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml 60: file size (byte) : 3930 -60: read time (ms) : 1.081228 -60: c-check time (ms) : 1.941204 +60: read time (ms) : 0.906944 +60: c-check time (ms) : 1.754522 60: validation error(s) : 0 60: (consistency error(s)): 0 60: validation warning(s) : 0 60: (consistency warning(s)): 0 60: --------------------------------------------------------------------------- 60: Validated 1 files, 1 valid files, 0 invalid files -60/67 Test #60: test_python_validateSBML ...................... Passed 0.16 sec +60/67 Test #60: test_python_validateSBML ...................... Passed 0.14 sec test 61 Start 61: test_python_stringInput @@ -180825,7 +180861,7 @@ 61: 61: 61: -61/67 Test #61: test_python_stringInput ....................... Passed 0.16 sec +61/67 Test #61: test_python_stringInput ....................... Passed 0.13 sec test 62 Start 62: test_python_stripPackage @@ -180835,7 +180871,7 @@ 62: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 62: Test timeout computed to be: 3000 62: [OK] stripped package 'fbc' from /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml -62/67 Test #62: test_python_stripPackage ...................... Passed 0.16 sec +62/67 Test #62: test_python_stripPackage ...................... Passed 0.18 sec test 63 Start 63: test_python_fbc_fbc_example1 @@ -180844,7 +180880,7 @@ 63: Environment variables: 63: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 63: Test timeout computed to be: 3000 -63/67 Test #63: test_python_fbc_fbc_example1 .................. Passed 0.17 sec +63/67 Test #63: test_python_fbc_fbc_example1 .................. Passed 0.19 sec test 64 Start 64: test_python_groups_groups_example1 @@ -180853,7 +180889,7 @@ 64: Environment variables: 64: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 64: Test timeout computed to be: 3000 -64/67 Test #64: test_python_groups_groups_example1 ............ Passed 0.16 sec +64/67 Test #64: test_python_groups_groups_example1 ............ Passed 0.17 sec test 65 Start 65: test_python_layout_example1_L3 @@ -180862,7 +180898,7 @@ 65: Environment variables: 65: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 65: Test timeout computed to be: 3000 -65/67 Test #65: test_python_layout_example1_L3 ................ Passed 0.17 sec +65/67 Test #65: test_python_layout_example1_L3 ................ Passed 0.19 sec test 66 Start 66: test_python_layout_example1 @@ -180871,7 +180907,7 @@ 66: Environment variables: 66: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 66: Test timeout computed to be: 3000 -66/67 Test #66: test_python_layout_example1 ................... Passed 0.17 sec +66/67 Test #66: test_python_layout_example1 ................... Passed 0.20 sec test 67 Start 67: test_python_qual_qual_example1 @@ -180880,11 +180916,11 @@ 67: Environment variables: 67: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python: 67: Test timeout computed to be: 3000 -67/67 Test #67: test_python_qual_qual_example1 ................ Passed 0.16 sec +67/67 Test #67: test_python_qual_qual_example1 ................ Passed 0.17 sec 100% tests passed, 0 tests failed out of 67 -Total Test time (real) = 88.03 sec +Total Test time (real) = 35.75 sec make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.2+dfsg/build' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddir=build -O--buildsystem=cmake -O--no-parallel @@ -181476,7 +181512,8 @@ mv /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/*/${pyv}/site-packages/* /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/${pyv}/dist-packages ; \ fi ; \ done -+ [ -d /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.12/site-packages/ ] ++ for pyv in python3.12 ++ '[' -d /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.12/site-packages/ ']' + mkdir -p /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/python3.12/dist-packages + mv /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.12/site-packages/libsbml /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.12/site-packages/libsbml.pth /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/python3.12/dist-packages find /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr -type f -name "*.js" -delete @@ -181507,15 +181544,17 @@ rmdir ${madir}/aarch64-linux-gnu ; \ fi ; \ done -+ + + find debian -name aarch64-linux-gnu -typeuniq d - -sort -+ [ -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu ] -+ echo Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place +++ find debian -name aarch64-linux-gnu -type d +++ sort +++ uniq ++ for madir in `find debian -name aarch64-linux-gnu -type d | sort | uniq` ++ '[' -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu ']' ++ echo 'Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place' Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place + mv debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/perl5 debian/tmp/usr/lib/aarch64-linux-gnu + rmdir debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu -+ [ -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/aarch64-linux-gnu ] ++ for madir in `find debian -name aarch64-linux-gnu -type d | sort | uniq` ++ '[' -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/aarch64-linux-gnu ']' find debian -type f -name "_form*" -delete make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.2+dfsg' dh_install -O--builddir=build -O--buildsystem=cmake -O--no-parallel @@ -181595,21 +181634,21 @@ dh_builddeb -O--builddir=build -O--buildsystem=cmake -O--no-parallel dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.2+dfsg-8_arm64.deb'. dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.2+dfsg-8_arm64.deb'. -dpkg-deb: building package 'libsbml5-cil' in '../libsbml5-cil_5.20.2+dfsg-8_arm64.deb'. -dpkg-deb: building package 'libsbml5-cil-doc' in '../libsbml5-cil-doc_5.20.2+dfsg-8_all.deb'. -dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.2+dfsg-8_all.deb'. +dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.2+dfsg-8_arm64.deb'. +dpkg-deb: building package 'libsbml5-java-dbgsym' in '../libsbml5-java-dbgsym_5.20.2+dfsg-8_arm64.deb'. dpkg-deb: building package 'libsbml5-perl-dbgsym' in '../libsbml5-perl-dbgsym_5.20.2+dfsg-8_arm64.deb'. dpkg-deb: building package 'python3-sbml5-doc' in '../python3-sbml5-doc_5.20.2+dfsg-8_all.deb'. -dpkg-deb: building package 'libsbml5-java-dbgsym' in '../libsbml5-java-dbgsym_5.20.2+dfsg-8_arm64.deb'. -dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.2+dfsg-8_arm64.deb'. +dpkg-deb: building package 'libsbml5-cil' in '../libsbml5-cil_5.20.2+dfsg-8_arm64.deb'. +dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.2+dfsg-8_all.deb'. +dpkg-deb: building package 'libsbml5-cil-doc' in '../libsbml5-cil-doc_5.20.2+dfsg-8_all.deb'. dpkg-deb: building package 'libsbml5-doc' in '../libsbml5-doc_5.20.2+dfsg-8_all.deb'. dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.2+dfsg-8_all.deb'. dpkg-deb: building package 'libsbml5-cil-dbgsym' in '../libsbml5-cil-dbgsym_5.20.2+dfsg-8_arm64.deb'. dpkg-deb: building package 'libsbml5t64' in '../libsbml5t64_5.20.2+dfsg-8_arm64.deb'. -dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.2+dfsg-8_arm64.deb'. -dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.2+dfsg-8_arm64.deb'. dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.2+dfsg-8_arm64.deb'. +dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.2+dfsg-8_arm64.deb'. dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.2+dfsg-8_arm64.deb'. +dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.2+dfsg-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libsbml_5.20.2+dfsg-8_arm64.buildinfo dpkg-genchanges --build=binary -O../libsbml_5.20.2+dfsg-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -181618,12 +181657,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2981070/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2981070/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2881144 and its subdirectories -I: Current time: Thu Dec 12 23:44:41 -12 2024 -I: pbuilder-time-stamp: 1734090281 +I: removing directory /srv/workspace/pbuilder/2981070 and its subdirectories +I: Current time: Sat Dec 14 03:01:11 +14 2024 +I: pbuilder-time-stamp: 1734094871