Diff of the two buildlogs: -- --- b1/build.log 2024-11-08 20:04:21.912804080 +0000 +++ b2/build.log 2024-11-08 20:14:43.554545563 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 11 14:23:46 -12 2025 -I: pbuilder-time-stamp: 1765506226 +I: Current time: Fri Dec 12 16:27:27 +14 2025 +I: pbuilder-time-stamp: 1765506447 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: unpacking libpysal_4.12.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3272199/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3622959/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 12 02:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3622959/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3622959/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='18e4205883204d1883909ac3eca946d3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3272199' - PS1='# ' - PS2='> ' + INVOCATION_ID=d183316b1cc9409e87f39abe2f3caa40 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3622959 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.I03hodv5/pbuilderrc_pCf8 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.I03hodv5/b1 --logfile b1/build.log libpysal_4.12.1-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.I03hodv5/pbuilderrc_GH79 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.I03hodv5/b2 --logfile b2/build.log libpysal_4.12.1-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3272199/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/3622959/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -498,7 +530,7 @@ Get: 334 http://deb.debian.org/debian trixie/main arm64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB] Get: 335 http://deb.debian.org/debian trixie/main arm64 python3-sphinx-bootstrap-theme all 0.8.1-5 [422 kB] Get: 336 http://deb.debian.org/debian trixie/main arm64 python3-sphinxcontrib.bibtex all 2.6.2-1 [32.4 kB] -Fetched 185 MB in 1s (225 MB/s) +Fetched 185 MB in 2s (74.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20089 files and directories currently installed.) @@ -1576,8 +1608,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 12 02:24:29 UTC 2025. -Universal Time is now: Fri Dec 12 02:24:29 UTC 2025. +Local time is now: Fri Dec 12 02:29:29 UTC 2025. +Universal Time is now: Fri Dec 12 02:29:29 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1890,7 +1922,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libpysal-4.12.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpysal_4.12.1-1_source.changes +I: user script /srv/workspace/pbuilder/3622959/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3622959/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libpysal-4.12.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpysal_4.12.1-1_source.changes dpkg-buildpackage: info: source package libpysal dpkg-buildpackage: info: source version 4.12.1-1 dpkg-buildpackage: info: source distribution unstable @@ -2293,7 +2329,7 @@ Copying libpysal.egg-info to build/bdist.linux-aarch64/wheel/./libpysal-4.12.1.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/libpysal-4.12.1.dist-info/WHEEL -creating '/build/reproducible-path/libpysal-4.12.1/.pybuild/cpython3_3.12_libpysal/.tmp-74m2i7ru/libpysal-4.12.1-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/libpysal-4.12.1/.pybuild/cpython3_3.12_libpysal/.tmp-3ufptma3/libpysal-4.12.1-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'libpysal/__init__.py' adding 'libpysal/common.py' adding 'libpysal/cg/__init__.py' @@ -2470,29 +2506,29 @@ [autosummary] generating autosummary for: api.rst, index.rst, installation.rst, migration.rst, references.rst, user-guide/data/examples.ipynb, user-guide/graph/intro.rst, user-guide/graph/matching-graph.ipynb, user-guide/graph/w_g_migration.ipynb, user-guide/intro.rst, user-guide/weights/Raster_awareness_API.ipynb, user-guide/weights/categorical_lag.ipynb, user-guide/weights/intro.rst, user-guide/weights/matching-graph.ipynb, user-guide/weights/voronoi.ipynb, user-guide/weights/weights.ipynb [autosummary] generating autosummary for: /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.Chain.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.Grid.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.KDTree.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.Line.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.LineSegment.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.Point.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.PointLocator.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.Polygon.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.PolygonLocator.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.cg.RADIUS_EARTH_KM.rst, ..., /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.vecW.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.w2da.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.w_clip.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.w_difference.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.w_intersection.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.w_local_cluster.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.w_subset.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.w_symmetric_difference.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.w_union.rst, /build/reproducible-path/libpysal-4.12.1/docs/generated/libpysal.weights.wsp2da.rst loading intersphinx inventory 'geopandas' from https://geopandas.org/en/latest/objects.inv... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://geopandas.org/en/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='geopandas.org', port=443): Max retries exceeded with url: /en/latest/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'libpysal' from https://pysal.org/libpysal/objects.inv... loading intersphinx inventory 'matplotlib' from https://matplotlib.org/stable/objects.inv... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://pysal.org/libpysal/objects.inv' not fetchable due to : HTTPSConnectionPool(host='pysal.org', port=443): Max retries exceeded with url: /libpysal/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'networkx' from https://networkx.org/documentation/stable/objects.inv... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://pysal.org/libpysal/objects.inv' not fetchable due to : HTTPSConnectionPool(host='pysal.org', port=443): Max retries exceeded with url: /libpysal/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://pandas.pydata.org/pandas-docs/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='pandas.pydata.org', port=443): Max retries exceeded with url: /pandas-docs/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'python' from https://docs.python.org/3.12/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://geopandas.org/en/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='geopandas.org', port=443): Max retries exceeded with url: /en/latest/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.python.org/3.12/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3.12/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://pandas.pydata.org/pandas-docs/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='pandas.pydata.org', port=443): Max retries exceeded with url: /pandas-docs/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3.12/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3.12/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 16 source files that are out of date @@ -3876,7 +3912,7 @@ now = datetime.datetime.utcfromtimestamp( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================ 440 passed, 47 skipped, 21 warnings in 16.58s ================= +================ 440 passed, 47 skipped, 21 warnings in 43.80s ================= dh_auto_test I: pybuild base:311: cd /build/reproducible-path/libpysal-4.12.1/.pybuild/cpython3_3.12_libpysal/build; make[1]: Leaving directory '/build/reproducible-path/libpysal-4.12.1' @@ -3928,12 +3964,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3622959/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3622959/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3272199 and its subdirectories -I: Current time: Thu Dec 11 14:27:20 -12 2025 -I: pbuilder-time-stamp: 1765506440 +I: removing directory /srv/workspace/pbuilder/3622959 and its subdirectories +I: Current time: Fri Dec 12 16:37:42 +14 2025 +I: pbuilder-time-stamp: 1765507062