Diff of the two buildlogs:
--
--- b1/build.log 2025-01-31 16:54:23.618795604 +0000
+++ b2/build.log 2025-01-31 16:58:05.244777887 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Thu Mar 5 11:11:14 -12 2026
-I: pbuilder-time-stamp: 1772752274
+I: Current time: Sat Feb 1 06:54:28 +14 2025
+I: pbuilder-time-stamp: 1738342468
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
@@ -22,52 +22,84 @@
dpkg-source: info: unpacking libcifpp_7.0.9-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/2200233/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2939777/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink04-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Jan 31 16:54 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2939777/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2939777/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='arm64'
- DEBIAN_FRONTEND='noninteractive'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=arm64
+ DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
- DISTRIBUTION='trixie'
- HOME='/root'
- HOST_ARCH='arm64'
+ DIRSTACK=()
+ DISTRIBUTION=trixie
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=aarch64
+ HOST_ARCH=arm64
IFS='
'
- INVOCATION_ID='7a99b0825e2245f58babf8d49dd7f512'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='2200233'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=c7f08c78c24b4005a660c8d1297b3589
+ LANG=C
+ LANGUAGE=nl_BE:nl
+ LC_ALL=C
+ MACHTYPE=aarch64-unknown-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=2939777
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BBrlf3kd/pbuilderrc_SrRc --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BBrlf3kd/b1 --logfile b1/build.log libcifpp_7.0.9-1.dsc'
- SUDO_GID='109'
- SUDO_UID='104'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://192.168.101.4:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BBrlf3kd/pbuilderrc_fcBD --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BBrlf3kd/b2 --logfile b2/build.log libcifpp_7.0.9-1.dsc'
+ SUDO_GID=109
+ SUDO_UID=104
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://192.168.101.4:3128
I: uname -a
- Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/2200233/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/2939777/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -342,7 +374,7 @@
Get: 215 http://deb.debian.org/debian trixie/main arm64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B]
Get: 216 http://deb.debian.org/debian trixie/main arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB]
Get: 217 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
-Fetched 160 MB in 1s (148 MB/s)
+Fetched 160 MB in 1s (216 MB/s)
Preconfiguring packages ...
Selecting previously unselected package fonts-lato.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19964 files and directories currently installed.)
@@ -1053,8 +1085,8 @@
Setting up tzdata (2024b-6) ...
Current default time zone: 'Etc/UTC'
-Local time is now: Thu Mar 5 23:12:15 UTC 2026.
-Universal Time is now: Thu Mar 5 23:12:15 UTC 2026.
+Local time is now: Fri Jan 31 16:55:07 UTC 2025.
+Universal Time is now: Fri Jan 31 16:55:07 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up autotools-dev (20220109.1) ...
@@ -1251,7 +1283,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/libcifpp-7.0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libcifpp_7.0.9-1_source.changes
+I: user script /srv/workspace/pbuilder/2939777/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/2939777/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libcifpp-7.0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libcifpp_7.0.9-1_source.changes
dpkg-buildpackage: info: source package libcifpp
dpkg-buildpackage: info: source version 7.0.9-1
dpkg-buildpackage: info: source distribution unstable
@@ -1309,7 +1345,7 @@
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build
--- Configuring done (13.8s)
+-- Configuring done (10.8s)
-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
@@ -1334,49 +1370,51 @@
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/depend
-make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/depend
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/CMakeFiles/cifpp.dir/DependInfo.cmake "--color="
+make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/depend
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/docs /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/CMakeFiles/Doxygen-libcifpp.dir/DependInfo.cmake "--color="
-make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/depend
+make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/CMakeFiles/cifpp.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/docs /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/CMakeFiles/Sphinx-libcifpp.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/build
-make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build
make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/build
make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/build
+make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/build
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-[ 2%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o
-/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/category.cpp
-[ 4%] Generating xml
-[ 6%] Generating xml
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/xml
+make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+[ 2%] Generating xml
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/xml
+[ 4%] Generating xml
+[ 6%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o
[ 9%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o
[ 11%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o
+[ 13%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o
+[ 15%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/xml
+/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/category.cpp
+[ 18%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/condition.cpp.o -MF CMakeFiles/cifpp.dir/src/condition.cpp.o.d -o CMakeFiles/cifpp.dir/src/condition.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/condition.cpp
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/datablock.cpp.o -MF CMakeFiles/cifpp.dir/src/datablock.cpp.o.d -o CMakeFiles/cifpp.dir/src/datablock.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/datablock.cpp
-[ 13%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -MF CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/dictionary_parser.cpp
-[ 15%] Generating docs
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/Doxyfile
-[ 18%] Generating docs
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/Doxyfile
-[ 20%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o
+[ 20%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/file.cpp.o -MF CMakeFiles/cifpp.dir/src/file.cpp.o.d -o CMakeFiles/cifpp.dir/src/file.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/file.cpp
-[ 22%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o
+[ 22%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o
+[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/item.cpp.o -MF CMakeFiles/cifpp.dir/src/item.cpp.o.d -o CMakeFiles/cifpp.dir/src/item.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/item.cpp
-[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o
-[ 27%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/parser.cpp.o -MF CMakeFiles/cifpp.dir/src/parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/parser.cpp
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/row.cpp.o -MF CMakeFiles/cifpp.dir/src/row.cpp.o.d -o CMakeFiles/cifpp.dir/src/row.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/row.cpp
-[ 29%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/validate.cpp.o -MF CMakeFiles/cifpp.dir/src/validate.cpp.o.d -o CMakeFiles/cifpp.dir/src/validate.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/validate.cpp
+[ 27%] Generating docs
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/Doxyfile
+[ 29%] Generating docs
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/docs/Doxyfile
+[ 31%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o
+/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/text.cpp.o -MF CMakeFiles/cifpp.dir/src/text.cpp.o.d -o CMakeFiles/cifpp.dir/src/text.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/text.cpp
Doxygen version used: 1.9.8
Searching for include files...
Searching for example files...
@@ -1433,8 +1471,7 @@
Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/io.hpp...
Preprocessing /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/pdb2cif.hpp...
Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/pdb2cif.hpp...
-Preprocessing /build/reproducible-path/libcifpp-7.0.[ 31%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o
-Doxygen version used: 1.9.8
+Preprocessing /build/reproducible-path/libcifpp-7.0.Doxygen version used: 1.9.8
Searching for include files...
Searching for example files...
Searching for images...
@@ -1490,8 +1527,7 @@
Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/io.hpp...
Preprocessing /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/pdb2cif.hpp...
Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/pdb2cif.hpp...
-Preprocessing /build/reproducible-path/libcifpp-7.0./usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/text.cpp.o -MF CMakeFiles/cifpp.dir/src/text.cpp.o.d -o CMakeFiles/cifpp.dir/src/text.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/text.cpp
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented.
+Preprocessing /build/reproducible-path/libcifpp-7.0./build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented.
9/include/cif++/pdb/tls.hpp...
Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/tls.hpp...
@@ -1591,6 +1627,8 @@
Generating code for file cif++/pdb/tls.hpp...
Generating code for file c/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented.
9/include/cif++/pdb/tls.hpp...
Parsing file /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/tls.hpp...
Preprocessing /build/reproducible-path/libcifpp-7.0.9/include/cif++/point.hpp...
@@ -1687,9 +1725,7 @@
Generating code for file cif++/pdb/io.hpp...
Generating code for file cif++/pdb/pdb2cif.hpp...
Generating code for file cif++/pdb/tls.hpp...
-Generating code for file c/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented.
+Generating code for file c/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented.
@@ -1800,11 +1836,6 @@
/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:273: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:291: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:326: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented.
enerating docs for compound cif::quaternion_type...
Generating docs for compound cif::row...
Generating docs for compound cif::row_handle...
@@ -1884,7 +1915,12 @@
Generating XML output for class cif::item_value
Generating XML output for class cif::iterator_impl
Generating XML output for class cif::iterator_impl< Category >
-Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented.
+Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:273: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:291: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/compound.hpp:326: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented.
/build/reproducible-path/libcifpp-7.0.9/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented.
@@ -1974,13 +2010,7 @@
Generating docs for compound cif::parser...
Generating docs for compound cif::point_type...
Generating docs for compound cif::progress_bar...
-G/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented.
-/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx")
+G/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx")
/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented:
parameter 'pdbx_file'
/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx")
@@ -1992,6 +2022,12 @@
/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec)
/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented:
parameter 'pdbx_file'
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented.
+/build/reproducible-path/libcifpp-7.0.9/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented.
enerating docs for compound cif::quaternion_type...
Generating docs for compound cif::row...
Generating docs for compound cif::row_handle...
@@ -2163,6 +2199,7 @@
type lookup cache used 4697/65536 hits=49311 misses=4943
symbol lookup cache used 5043/65536 hits=61869 misses=5043
finished...
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx")
/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented:
parameter 'pdbx_file'
@@ -2175,9 +2212,9 @@
/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec)
/build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented:
parameter 'pdbx_file'
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
[ 31%] Built target Doxygen-libcifpp
[ 34%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o
+/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/utilities.cpp.o -MF CMakeFiles/cifpp.dir/src/utilities.cpp.o.d -o CMakeFiles/cifpp.dir/src/utilities.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/utilities.cpp
tegory, T >
Generating XML output for class cif::iterator_proxy
Generating XML output for class cif::key
@@ -2263,8 +2300,7 @@
Generating XML output for file utilities.hpp
Generating XML output for file validate.hpp
Generating XML output for page deprecated
-Generate XML output for dir /build/reproduc/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/utilities.cpp.o -MF CMakeFiles/cifpp.dir/src/utilities.cpp.o.d -o CMakeFiles/cifpp.dir/src/utilities.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/utilities.cpp
-ible-path/libcifpp-7.0.9/include/cif++/
+Generate XML output for dir /build/reproducible-path/libcifpp-7.0.9/include/cif++/
Generate XML output for dir /build/reproducible-path/libcifpp-7.0.9/include/cif++/pdb/
Running plantuml with JAVA...
Running dot...
@@ -2292,23 +2328,23 @@
/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/cif2pdb.cpp
[ 52%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o
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+[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o
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+[ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o
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+[ 59%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o
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[31;1m(!) Unabridged API: unexpected kind 'concept' (IGNORED)
[0m[34;1m[~] Exhale: parsing Doxygen XML.[0m
-[32;1m[+] Exhale: finished parsing Doxygen XML in 4.73 seconds.[0m
+[32;1m[+] Exhale: finished parsing Doxygen XML in 2.91 seconds.[0m
[34;1m[~] Exhale: generating reStructuredText documents.[0m
-[32;1m[+] Exhale: generated reStructuredText documents in 4.11 seconds.[0m
+[32;1m[+] Exhale: generated reStructuredText documents in 3.17 seconds.[0m
myst v4.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True)
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 8 source files that are out of date
updating environment: [new config] 332 added, 0 changed, 0 removed
reading sources... [ 0%] api/classcif_1_1atom__type__traits
-[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o
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-[ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o
-/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp
-[ 59%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o
-/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.9/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/src/pdb/validate-pdbx.cpp
reading sources... [ 1%] api/classcif_1_1category
reading sources... [ 1%] api/classcif_1_1cell
reading sources... [ 1%] api/classcif_1_1compound
@@ -2570,6 +2606,25 @@
reading sources... [ 78%] api/program_listing_file_cif++_item.hpp
reading sources... [ 79%] api/program_listing_file_cif++_iterator.hpp
reading sources... [ 79%] api/program_listing_file_cif++_matrix.hpp
+In file included from /usr/include/c++/14/string:42,
+ from /usr/include/c++/14/stdexcept:39,
+ from /usr/include/c++/14/system_error:43,
+ from /usr/include/c++/14/bits/fs_fwd.h:35,
+ from /usr/include/c++/14/filesystem:51,
+ from /build/reproducible-path/libcifpp-7.0.9/include/cif++/utilities.hpp:31,
+ from /build/reproducible-path/libcifpp-7.0.9/include/cif++.hpp:29,
+ from /build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp:27:
+In static member function ‘static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)’,
+ inlined from ‘constexpr void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::push_back(_CharT) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at /usr/include/c++/14/bits/basic_string.h:1577:21,
+ inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator+=(_CharT) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at /usr/include/c++/14/bits/basic_string.h:1399:17,
+ inlined from ‘void cif::pdb::createEntityPoly(cif::datablock&)’ at /build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp:845:29:
+/usr/include/c++/14/bits/char_traits.h:350:14: warning: ‘letter_can’ may be used uninitialized [-Wmaybe-uninitialized]
+ 350 | __c1 = __c2;
+ | ~~~~~^~~~~~
+/build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp: In function ‘void cif::pdb::createEntityPoly(cif::datablock&)’:
+/build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp:780:30: note: ‘letter_can’ was declared here
+ 780 | char letter_can;
+ | ^~~~~~~~~~
reading sources... [ 79%] api/program_listing_file_cif++_model.hpp
reading sources... [ 80%] api/program_listing_file_cif++_parser.hpp
reading sources... [ 80%] api/program_listing_file_cif++_pdb.hpp
@@ -2710,26 +2765,7 @@
/build/reproducible-path/libcifpp-7.0.9/docs/basics.rst:343: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils]
/build/reproducible-path/libcifpp-7.0.9/docs/symmetry.rst:37: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils]
looking for now-outdated files... none found
-pickling environment... In file included from /usr/include/c++/14/string:42,
- from /usr/include/c++/14/stdexcept:39,
- from /usr/include/c++/14/system_error:43,
- from /usr/include/c++/14/bits/fs_fwd.h:35,
- from /usr/include/c++/14/filesystem:51,
- from /build/reproducible-path/libcifpp-7.0.9/include/cif++/utilities.hpp:31,
- from /build/reproducible-path/libcifpp-7.0.9/include/cif++.hpp:29,
- from /build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp:27:
-In static member function ‘static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)’,
- inlined from ‘constexpr void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::push_back(_CharT) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at /usr/include/c++/14/bits/basic_string.h:1577:21,
- inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator+=(_CharT) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at /usr/include/c++/14/bits/basic_string.h:1399:17,
- inlined from ‘void cif::pdb::createEntityPoly(cif::datablock&)’ at /build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp:845:29:
-/usr/include/c++/14/bits/char_traits.h:350:14: warning: ‘letter_can’ may be used uninitialized [-Wmaybe-uninitialized]
- 350 | __c1 = __c2;
- | ~~~~~^~~~~~
-/build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp: In function ‘void cif::pdb::createEntityPoly(cif::datablock&)’:
-/build/reproducible-path/libcifpp-7.0.9/src/pdb/reconstruct.cpp:780:30: note: ‘letter_can’ was declared here
- 780 | char letter_can;
- | ^~~~~~~~~~
-done
+pickling environment... done
checking consistency... done
preparing documents... done
copying assets...
@@ -2784,6 +2820,34 @@
writing output... [ 12%] api/classcif_1_1mm_1_1structure
writing output... [ 12%] api/classcif_1_1mm_1_1sugar
writing output... [ 13%] api/classcif_1_1multiple__results__error
+In file included from /usr/include/eigen3/Eigen/Core:341,
+ from /usr/include/eigen3/Eigen/Eigenvalues:11,
+ from /build/reproducible-path/libcifpp-7.0.9/src/symmetry.cpp:35:
+/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, 4, 4>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, -1, 1, 1, 4> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, 4, 4>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<float, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
+/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
+ 327 | internal::triangular_matrix_vector_product
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 328 | <Index,Mode,
+ | ~~~~~~~~~~~~
+ 329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 331 | RowMajor>
+ | ~~~~~~~~~
+ 332 | ::run(actualLhs.rows(),actualLhs.cols(),
+ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 333 | actualLhs.data(),actualLhs.outerStride(),
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 334 | actualRhsPtr,1,
+ | ~~~~~~~~~~~~~~~
+ 335 | dest.data(),dest.innerStride(),
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 336 | actualAlpha);
+ | ~~~~~~~~~~~~
+/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]’ declared here
+ 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
writing output... [ 13%] api/classcif_1_1parse__error
writing output... [ 13%] api/classcif_1_1parser
writing output... [ 14%] api/classcif_1_1progress__bar
@@ -2813,34 +2877,6 @@
writing output... [ 21%] api/enum_model_8hpp_1a6085af7e2c3294d3d5520e387757e8dd
writing output... [ 21%] api/enum_namespacecif_1a22f8e0bb538e176ebddfe89c7ef03a6d
writing output... [ 21%] api/enum_namespacecif_1a339253d4b856d267db110e2e55b6fa46
-In file included from /usr/include/eigen3/Eigen/Core:341,
- from /usr/include/eigen3/Eigen/Eigenvalues:11,
- from /build/reproducible-path/libcifpp-7.0.9/src/symmetry.cpp:35:
-/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, 4, 4>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, -1, 1, 1, 4> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, 4, 4>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<float, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
-/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
- 327 | internal::triangular_matrix_vector_product
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 328 | <Index,Mode,
- | ~~~~~~~~~~~~
- 329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 331 | RowMajor>
- | ~~~~~~~~~
- 332 | ::run(actualLhs.rows(),actualLhs.cols(),
- | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 333 | actualLhs.data(),actualLhs.outerStride(),
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 334 | actualRhsPtr,1,
- | ~~~~~~~~~~~~~~~
- 335 | dest.data(),dest.innerStride(),
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 336 | actualAlpha);
- | ~~~~~~~~~~~~
-/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]’ declared here
- 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
writing output... [ 22%] api/enum_namespacecif_1a636b6271c6af17a0d73dbe4557061c03
writing output... [ 22%] api/enum_namespacecif_1a6e1d07f3689961d3ec0d1e7cbfeefc6f
writing output... [ 22%] api/enum_namespacecif_1a701ee5c69b8bf4a14c0807d32581e87d
@@ -3140,69 +3176,69 @@
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cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/unit-3d-test.dir/DependInfo.cmake "--color="
-make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/depend
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/build
-make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/depend
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/rename-compound-test.dir/DependInfo.cmake "--color="
+make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/format-test.dir/DependInfo.cmake "--color="
-make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/build
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/model-test.dir/DependInfo.cmake "--color="
-make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/depend
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/rename-compound-test.dir/DependInfo.cmake "--color="
-make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/depend
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/sugar-test.dir/DependInfo.cmake "--color="
-[ 65%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o
-make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/depend
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -MF CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o.d -o CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/unit-3d-test.cpp
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/spinner-test.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/build
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/build
-[ 68%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -MF CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o.d -o CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/unit-v2-test.cpp
+make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/build
+make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/build
+make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/build
make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/build
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
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make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.9 /build/reproducible-path/libcifpp-7.0.9/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/build
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/build
-[ 70%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/format-test.dir/format-test.cpp.o -MF CMakeFiles/format-test.dir/format-test.cpp.o.d -o CMakeFiles/format-test.dir/format-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/format-test.cpp
+make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/build
+make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/build
+make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-[ 75%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o
-[ 77%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o
+make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+[ 65%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -MF CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o.d -o CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/rename-compound-test.cpp
+[ 68%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o
+[ 70%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o
[ 72%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/spinner-test.cpp
+[ 75%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -MF CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o.d -o CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/unit-v2-test.cpp
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -MF CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o.d -o CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/unit-3d-test.cpp
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/model-test.dir/model-test.cpp.o -MF CMakeFiles/model-test.dir/model-test.cpp.o.d -o CMakeFiles/model-test.dir/model-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/model-test.cpp
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/format-test.dir/format-test.cpp.o -MF CMakeFiles/format-test.dir/format-test.cpp.o.d -o CMakeFiles/format-test.dir/format-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/format-test.cpp
+[ 77%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o
+[ 79%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o
+[ 81%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/sugar-test.cpp
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/build
-[ 79%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -MF CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o.d -o CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/rename-compound-test.cpp
-make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-[ 81%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -MF CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o.d -o CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/validate-pdbx-test.cpp
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.9/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.9/test/spinner-test.cpp
[ 84%] Linking CXX executable spinner-test
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/spinner-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spinner-test.dir/link.d "CMakeFiles/spinner-test.dir/spinner-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o spinner-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so
@@ -3213,16 +3249,16 @@
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/format-test.dir/link.d "CMakeFiles/format-test.dir/format-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o format-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so
make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
[ 86%] Built target format-test
-[ 88%] Linking CXX executable sugar-test
-cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1
-[ 90%] Linking CXX executable rename-compound-test
+[ 88%] Linking CXX executable rename-compound-test
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/rename-compound-test.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rename-compound-test.dir/link.d "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so
+make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
+[ 88%] Built target rename-compound-test
+[ 90%] Linking CXX executable sugar-test
+cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sugar-test.dir/link.d "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so
make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
[ 90%] Built target sugar-test
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rename-compound-test.dir/link.d "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so
-make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
-[ 90%] Built target rename-compound-test
[ 93%] Linking CXX executable validate-pdbx-test
cd /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate-pdbx-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/validate-pdbx-test.dir/link.d "CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o validate-pdbx-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu ../libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so
@@ -3340,7 +3376,7 @@
8: Test command: /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test/validate-pdbx-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.9/test"
8: Working Directory: /build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu/test
8: Test timeout computed to be: 1500
-3: Randomness seeded to: 1280314537
+3: Randomness seeded to: 2349278535
3: Hello, world!
3: Hello, world!
3: Hello, world!
@@ -3351,15 +3387,18 @@
3: ===============================================================================
3: All tests passed (2 assertions in 2 test cases)
3:
-5: Randomness seeded to: 2922975092
+1/8 Test #3: format-test ...................... Passed 0.02 sec
+5: Randomness seeded to: 1100650557
5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary
5: choosing N
-1/8 Test #3: format-test ...................... Passed 0.10 sec
-1: Randomness seeded to: 867065319
+1: Randomness seeded to: 759800652
1: warning: no child to parent links were found for child cat_1 and parent cat_3
1: Error parsing mmCIF: This file does not seem to be an mmCIF file
5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary
5: choosing N
+4: Randomness seeded to: 1076053230
+4: Warning: no atoms loaded
+4: Warning: no atoms loaded
5: Creating component index ... done
5: Loading component RXA... done
5: Will not rename in child category since there are already rows that link to the parent
@@ -5679,6 +5718,11 @@
5: _pdbx_struct_sheet_hbond.range_2_auth_seq_id
5: A 1 2 O PHE A 65 ? O PHE A 65 N PHE A 50 ? N PHE A 50
5: A 2 3 N SER A 55 ? N SER A 55 O ALA A 40 ? O ALA A 40
+8: Randomness seeded to: 4035575938
+8: ===============================================================================
+8: All tests passed (15 assertions in 1 test case)
+8:
+2/8 Test #8: validate-pdbx-test ............... Passed 0.19 sec
5: A 3 4 N ILE A 43 ? N ILE A 43 O GLY A 5 ? O GLY A 5
5: A 4 5 N GLU A 13 ? N GLU A 13 O THR A 131 ? O THR A 131
5: A 5 6 N TYR A 134 ? N TYR A 134 O LEU A 119 ? O LEU A 119
@@ -5688,8 +5732,48 @@
5: A 9 10 N SER A 83 ? N SER A 83 O PHE A 71 ? O PHE A 71
5: #
5: Skipping validation of empty category pdbx_branch_scheme
-4: Randomness seeded to: 2944105636
-4: Warning: no atoms loaded
+1: Adding mandatory item conn_type_id to category struct_conn
+1: Adding mandatory item ptnr1_label_asym_id to category struct_conn
+1: Adding mandatory item ptnr1_label_comp_id to category struct_conn
+1: Adding mandatory item ptnr1_label_seq_id to category struct_conn
+1: Adding mandatory item ptnr2_label_asym_id to category struct_conn
+1: Adding mandatory item ptnr2_label_comp_id to category struct_conn
+1: Adding mandatory item ptnr2_label_seq_id to category struct_conn
+1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme
+1:
+1: Configuration error:
+1:
+1: The attempt to retrieve compound information for "&&&" failed.
+1:
+1: This information is searched for in a CCD file called components.cif or
+1: components.cif.gz which should be located in one of the following directories:
+1:
+1:
+1: (Note that you can add a directory to the search paths by setting the
+1: LIBCIFPP_DATA_DIR environmental variable)
+1:
+1: On Linux an optional cron script might have been installed that automatically updates
+1: components.cif and mmCIF dictionary files. This script only works when the file
+1: libcifpp.conf contains an uncommented line with the text:
+1:
+1: update=true
+1:
+1: If you do not have a working cron script, you can manually update the files
+1: in /var/cache/libcifpp using the following commands:
+1:
+1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif
+1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic
+1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic
+1:
+1: The current order of compound factory objects is:
+1:
+1: CCD components file: "/build/reproducible-path/libcifpp-7.0.9/test/REA_v2.cif"
+1: CCD components file: "/build/reproducible-path/libcifpp-7.0.9/test/HEM.cif"
+1: CCD components.cif resource
+1:
+1: The following named resources were loaded:
+1: components.cif -> "/build/reproducible-path/libcifpp-7.0.9/test/../rsrc/ccd-subset.cif"
+1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.9/test/../rsrc/mmcif_pdbx.dic"
5: data_1CBS
5: #
5: _entry.id 1CBS
@@ -8023,59 +8107,11 @@
5: test cases: 1 | 1 passed
5: assertions: - none -
5:
-4: Warning: no atoms loaded
-2/8 Test #5: rename-compound-test ............. Passed 0.32 sec
-8: Randomness seeded to: 238332754
-8: ===============================================================================
-8: All tests passed (15 assertions in 1 test case)
-8:
-3/8 Test #8: validate-pdbx-test ............... Passed 0.28 sec
4: ===============================================================================
4: All tests passed (8500 assertions in 6 test cases)
4:
-4/8 Test #4: model-test ....................... Passed 0.44 sec
-1: Adding mandatory item conn_type_id to category struct_conn
-1: Adding mandatory item ptnr1_label_asym_id to category struct_conn
-1: Adding mandatory item ptnr1_label_comp_id to category struct_conn
-1: Adding mandatory item ptnr1_label_seq_id to category struct_conn
-1: Adding mandatory item ptnr2_label_asym_id to category struct_conn
-1: Adding mandatory item ptnr2_label_comp_id to category struct_conn
-1: Adding mandatory item ptnr2_label_seq_id to category struct_conn
-1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme
-1:
-1: Configuration error:
-1:
-1: The attempt to retrieve compound information for "&&&" failed.
-1:
-1: This information is searched for in a CCD file called components.cif or
-1: components.cif.gz which should be located in one of the following directories:
-1:
-1:
-1: (Note that you can add a directory to the search paths by setting the
-1: LIBCIFPP_DATA_DIR environmental variable)
-1:
-1: On Linux an optional cron script might have been installed that automatically updates
-1: components.cif and mmCIF dictionary files. This script only works when the file
-1: libcifpp.conf contains an uncommented line with the text:
-1:
-1: update=true
-1:
-1: If you do not have a working cron script, you can manually update the files
-1: in /var/cache/libcifpp using the following commands:
-1:
-1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif
-1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic
-1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic
-1:
-1: The current order of compound factory objects is:
-1:
-1: CCD components file: "/build/reproducible-path/libcifpp-7.0.9/test/REA_v2.cif"
-1: CCD components file: "/build/reproducible-path/libcifpp-7.0.9/test/HEM.cif"
-1: CCD components.cif resource
-1:
-1: The following named resources were loaded:
-1: components.cif -> "/build/reproducible-path/libcifpp-7.0.9/test/../rsrc/ccd-subset.cif"
-1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.9/test/../rsrc/mmcif_pdbx.dic"
+3/8 Test #5: rename-compound-test ............. Passed 0.24 sec
+4/8 Test #4: model-test ....................... Passed 0.25 sec
1: Choosing X-PLOR version '' as refinement program. Score = 1
1: Adding mandatory item value to category pdbx_struct_assembly_prop
1: Adding mandatory item conn_type_id to category struct_conn
@@ -8089,30 +8125,30 @@
1: ===============================================================================
1: All tests passed (100465 assertions in 51 test cases)
1:
-5/8 Test #1: unit-v2-test ..................... Passed 0.93 sec
-2: Randomness seeded to: 2163384120
+5/8 Test #1: unit-v2-test ..................... Passed 0.37 sec
+2: Randomness seeded to: 3922140247
2: (1.70711,1.70711,0)
2: ===============================================================================
2: All tests passed (5099624 assertions in 15 test cases)
2:
-6/8 Test #2: unit-3d-test ..................... Passed 3.09 sec
-7: Randomness seeded to: 1949245234
+6/8 Test #2: unit-3d-test ..................... Passed 1.22 sec
+6: Randomness seeded to: 1761012323
+6: ===============================================================================
+6: All tests passed (10 assertions in 2 test cases)
+6:
+7/8 Test #6: sugar-test ....................... Passed 3.55 sec
+7: Randomness seeded to: 2958649854
7: ===============================================================================
7: test cases: 3 | 3 passed
7: assertions: - none -
7:
-7/8 Test #7: spinner-test ..................... Passed 5.49 sec
-6: Randomness seeded to: 478049708
-6: ===============================================================================
-6: All tests passed (10 assertions in 2 test cases)
-6:
-8/8 Test #6: sugar-test ....................... Passed 7.45 sec
+8/8 Test #7: spinner-test ..................... Passed 4.28 sec
100% tests passed, 0 tests failed out of 8
-Total Test time (real) = 7.52 sec
+Total Test time (real) = 4.31 sec
make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.9/obj-aarch64-linux-gnu'
- rm -fr -- /tmp/dh-xdg-rundir-XomDX3kl
+ rm -fr -- /tmp/dh-xdg-rundir-XrsDzoeO
create-stamp debian/debhelper-build-stamp
dh_prep
rm -f -- debian/libcifpp-dev.substvars debian/libcifpp-doc.substvars debian/libcifpp7.substvars debian/libcifpp-data.substvars
@@ -8910,18 +8946,18 @@
install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data
install -p -m0644 debian/copyright debian/libcifpp-data/usr/share/doc/libcifpp-data/copyright
dh_installchangelogs
- install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data
- install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian
- install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog
- install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev
- install -p -m0644 debian/.debhelper/generated/libcifpp-dev/dh_installchangelogs.dch.trimmed debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog.Debian
- install -p -m0644 ./changelog debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog
install -m0755 -d debian/libcifpp-doc/usr/share/doc/libcifpp-doc
install -p -m0644 debian/.debhelper/generated/libcifpp-doc/dh_installchangelogs.dch.trimmed debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog.Debian
install -p -m0644 ./changelog debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog
+ install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev
+ install -p -m0644 debian/.debhelper/generated/libcifpp-dev/dh_installchangelogs.dch.trimmed debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog.Debian
+ install -p -m0644 ./changelog debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog
install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7
install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian
install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog
+ install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data
+ install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian
+ install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog
dh_installexamples
install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples
cp --reflink=auto -a ./examples/1cbs.cif.gz debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples
@@ -8948,45 +8984,45 @@
Using 1738076869 as canonical time
Normalizing debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz using File::StripNondeterminism::handlers::gzip
Using 1738076869 as canonical time
- Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/file.png using File::StripNondeterminism::handlers::png
- Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/minus.png using File::StripNondeterminism::handlers::png
Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/plus.png using File::StripNondeterminism::handlers::png
+ Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/minus.png using File::StripNondeterminism::handlers::png
+ Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/file.png using File::StripNondeterminism::handlers::png
dh_compress
- cd debian/libcifpp-doc
cd debian/libcifpp-dev
+ cd debian/libcifpp-doc
cd debian/libcifpp7
cd debian/libcifpp-data
+ chmod a-x usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian
chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian
+ chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian
+ gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian
gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian
- chmod a-x usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian
+ gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian
chmod a-x usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf
cd '/build/reproducible-path/libcifpp-7.0.9'
- gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf
- gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian
cd '/build/reproducible-path/libcifpp-7.0.9'
- chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian
- gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian
cd '/build/reproducible-path/libcifpp-7.0.9'
+ gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf
cd '/build/reproducible-path/libcifpp-7.0.9'
dh_fixperms
- find debian/libcifpp7 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/libcifpp-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libcifpp-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/libcifpp-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/libcifpp7 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libcifpp-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libcifpp7/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp7/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libcifpp-data/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libcifpp-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libcifpp7/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libcifpp-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
- find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libcifpp-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
- find debian/libcifpp7 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libcifpp-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/libcifpp-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/libcifpp7/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
+ find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libcifpp7 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libcifpp-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/libcifpp7/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
+ find debian/libcifpp-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing
dh_dwz -a
@@ -9030,42 +9066,42 @@
' | LC_ALL=C sort >> debian/libcifpp-data/DEBIAN/conffiles
chmod 0644 -- debian/libcifpp-data/DEBIAN/conffiles
dh_gencontrol
+ install -m0755 -d debian/libcifpp-doc/DEBIAN
+ echo misc:Depends= >> debian/libcifpp-doc.substvars
+ echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars
+ dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc
install -m0755 -d debian/libcifpp-dev/DEBIAN
echo misc:Depends= >> debian/libcifpp-dev.substvars
echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars
dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev
- install -m0755 -d debian/libcifpp-data/DEBIAN
- echo misc:Pre-Depends= >> debian/libcifpp-data.substvars
- dpkg-gencontrol -plibcifpp-data -ldebian/changelog -Tdebian/libcifpp-data.substvars -cdebian/control -Pdebian/libcifpp-data
install -m0755 -d debian/libcifpp7/DEBIAN
echo misc:Depends= >> debian/libcifpp7.substvars
echo misc:Pre-Depends= >> debian/libcifpp7.substvars
install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN
dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/.debhelper/libcifpp7/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcifpp7-dbgsym "-DDepends=libcifpp7 (= \${binary:Version})" "-DDescription=debug symbols for libcifpp7" -DBuild-Ids=7289194e135e0ec1d12c394cb095b644dfaaca38 -DSection=debug -UReplaces -UBreaks
- install -m0755 -d debian/libcifpp-doc/DEBIAN
- echo misc:Depends= >> debian/libcifpp-doc.substvars
- echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars
- dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc
+ install -m0755 -d debian/libcifpp-data/DEBIAN
+ echo misc:Pre-Depends= >> debian/libcifpp-data.substvars
+ dpkg-gencontrol -plibcifpp-data -ldebian/changelog -Tdebian/libcifpp-data.substvars -cdebian/control -Pdebian/libcifpp-data
+ chmod 0644 -- debian/libcifpp-doc/DEBIAN/control
chmod 0644 -- debian/libcifpp-dev/DEBIAN/control
- chmod 0644 -- debian/libcifpp-data/DEBIAN/control
chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/control
dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/libcifpp7
- chmod 0644 -- debian/libcifpp-doc/DEBIAN/control
+ chmod 0644 -- debian/libcifpp-data/DEBIAN/control
chmod 0644 -- debian/libcifpp7/DEBIAN/control
dh_md5sums
- install -m0755 -d debian/libcifpp-doc/DEBIAN
- cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
install -m0755 -d debian/libcifpp-dev/DEBIAN
- install -m0755 -d debian/libcifpp-data/DEBIAN
install -m0755 -d debian/libcifpp7/DEBIAN
cd debian/libcifpp-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
- cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
- chmod 0644 -- debian/libcifpp-doc/DEBIAN/md5sums
cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+ install -m0755 -d debian/libcifpp-data/DEBIAN
+ cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+ install -m0755 -d debian/libcifpp-doc/DEBIAN
+ chmod 0644 -- debian/libcifpp-dev/DEBIAN/md5sums
+ cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/libcifpp7/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN
- chmod 0644 -- debian/libcifpp-dev/DEBIAN/md5sums
cd debian/.debhelper/libcifpp7/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+ chmod 0644 -- debian/libcifpp-doc/DEBIAN/md5sums
chmod 0644 -- debian/libcifpp-data/DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/md5sums
dh_builddeb
@@ -9074,11 +9110,11 @@
dpkg-deb --root-owner-group --build debian/libcifpp7 ..
dpkg-deb --root-owner-group --build debian/.debhelper/libcifpp7/dbgsym-root ..
dpkg-deb --root-owner-group --build debian/libcifpp-data ..
+dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.9-1_arm64.deb'.
dpkg-deb: building package 'libcifpp-doc' in '../libcifpp-doc_7.0.9-1_all.deb'.
dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.9-1_arm64.deb'.
-dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.9-1_arm64.deb'.
-dpkg-deb: building package 'libcifpp-data' in '../libcifpp-data_7.0.9-1_all.deb'.
dpkg-deb: building package 'libcifpp7-dbgsym' in '../libcifpp7-dbgsym_7.0.9-1_arm64.deb'.
+dpkg-deb: building package 'libcifpp-data' in '../libcifpp-data_7.0.9-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../libcifpp_7.0.9-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../libcifpp_7.0.9-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -9086,12 +9122,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/2939777/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2939777/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/2200233 and its subdirectories
-I: Current time: Thu Mar 5 11:17:22 -12 2026
-I: pbuilder-time-stamp: 1772752642
+I: removing directory /srv/workspace/pbuilder/2939777 and its subdirectories
+I: Current time: Sat Feb 1 06:58:04 +14 2025
+I: pbuilder-time-stamp: 1738342684