Diff of the two buildlogs: -- --- b1/build.log 2024-05-06 14:30:31.162715541 +0000 +++ b2/build.log 2024-05-06 14:31:13.532913589 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 8 08:52:54 -12 2025 -I: pbuilder-time-stamp: 1749415974 +I: Current time: Tue May 7 04:30:34 +14 2024 +I: pbuilder-time-stamp: 1715005834 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying find_htslib.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2826810/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/332862/tmp/hooks/D01_modify_environment starting +debug: Running on codethink02-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 6 14:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/332862/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/332862/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='1e9e59e82fab47aa86b0a59acd077022' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2826810' - PS1='# ' - PS2='> ' + INVOCATION_ID=1064f4fcb28a4863b93dd8b1af00d5f4 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=332862 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2y7MxZ7n/pbuilderrc_pUmS --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2y7MxZ7n/b1 --logfile b1/build.log libbio-db-hts-perl_3.01-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2y7MxZ7n/pbuilderrc_WiKA --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2y7MxZ7n/b2 --logfile b2/build.log libbio-db-hts-perl_3.01-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 7 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2826810/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 6 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/332862/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -179,7 +211,7 @@ Get: 60 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.19+ds-1.1+b1 [1604 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libmodule-build-perl all 0.423400-2 [252 kB] -Fetched 27.9 MB in 0s (124 MB/s) +Fetched 27.9 MB in 0s (125 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19743 files and directories currently installed.) @@ -444,7 +476,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbio-db-hts-perl-3.01/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-hts-perl_3.01-4_source.changes +I: user script /srv/workspace/pbuilder/332862/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/332862/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbio-db-hts-perl-3.01/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-hts-perl_3.01-4_source.changes dpkg-buildpackage: info: source package libbio-db-hts-perl dpkg-buildpackage: info: source version 3.01-4 dpkg-buildpackage: info: source distribution unstable @@ -497,8 +533,8 @@ t/01bam.t ........ 1..452 # Running under perl version 5.038002 for linux -# Current time local: Sun Jun 8 20:53:18 2025 -# Current time GMT: Sun Jun 8 20:53:18 2025 +# Current time local: Mon May 6 14:31:02 2024 +# Current time GMT: Mon May 6 14:31:02 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -975,8 +1011,8 @@ t/03cram.t ....... 1..139 # Running under perl version 5.038002 for linux -# Current time local: Sun Jun 8 20:53:19 2025 -# Current time GMT: Sun Jun 8 20:53:19 2025 +# Current time local: Mon May 6 14:31:03 2024 +# Current time GMT: Mon May 6 14:31:03 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1435,8 +1471,8 @@ t/07cramwrite.t .. 1..22 # Running under perl version 5.038002 for linux -# Current time local: Sun Jun 8 20:53:23 2025 -# Current time GMT: Sun Jun 8 20:53:23 2025 +# Current time local: Mon May 6 14:31:07 2024 +# Current time GMT: Mon May 6 14:31:07 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1464,8 +1500,8 @@ t/08bamwrite.t ... 1..22 # Running under perl version 5.038002 for linux -# Current time local: Sun Jun 8 20:53:24 2025 -# Current time GMT: Sun Jun 8 20:53:24 2025 +# Current time local: Mon May 6 14:31:07 2024 +# Current time GMT: Mon May 6 14:31:07 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1518,7 +1554,7 @@ ok t/10leak.t ....... skipped: require Test::LeakTrace All tests successful. -Files=11, Tests=979, 6 wallclock secs ( 0.17 usr 0.01 sys + 5.66 cusr 0.53 csys = 6.37 CPU) +Files=11, Tests=979, 6 wallclock secs ( 0.12 usr 0.04 sys + 5.26 cusr 0.43 csys = 5.85 CPU) Result: PASS create-stamp debian/debhelper-build-stamp dh_prep @@ -1599,12 +1635,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/332862/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/332862/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2826810 and its subdirectories -I: Current time: Sun Jun 8 08:53:29 -12 2025 -I: pbuilder-time-stamp: 1749416009 +I: removing directory /srv/workspace/pbuilder/332862 and its subdirectories +I: Current time: Tue May 7 04:31:12 +14 2024 +I: pbuilder-time-stamp: 1715005872