Diff of the two buildlogs: -- --- b1/build.log 2024-05-15 03:55:03.614468592 +0000 +++ b2/build.log 2024-05-15 03:59:54.714086267 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 14 15:52:13 -12 2024 -I: pbuilder-time-stamp: 1715745133 +I: Current time: Wed May 15 17:55:09 +14 2024 +I: pbuilder-time-stamp: 1715745309 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -40,52 +40,84 @@ dpkg-source: info: applying deactivate_flatlaf.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3539382/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4181458/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 15 03:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4181458/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4181458/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='5234be7c990a4a12a978ea44ecf4cef2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3539382' - PS1='# ' - PS2='> ' + INVOCATION_ID=215a0d475d384f6b95b3037c28b67c19 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4181458 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9pYxUFPR/pbuilderrc_uumL --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9pYxUFPR/b1 --logfile b1/build.log jalview_2.11.3.1+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9pYxUFPR/pbuilderrc_LMhb --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9pYxUFPR/b2 --logfile b2/build.log jalview_2.11.3.1+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 11:38 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3539382/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 14 11:23 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4181458/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -625,7 +657,7 @@ Get: 430 http://deb.debian.org/debian trixie/main arm64 libmockito-java all 2.23.0-2 [479 kB] Get: 431 http://deb.debian.org/debian trixie/main arm64 libvamsas-client-java all 0.2+dfsg-2 [584 kB] Get: 432 http://deb.debian.org/debian trixie/main arm64 varna all 3-93+ds-5 [803 kB] -Fetched 362 MB in 3s (125 MB/s) +Fetched 362 MB in 2s (234 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) @@ -2029,8 +2061,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed May 15 03:53:05 UTC 2024. -Universal Time is now: Wed May 15 03:53:05 UTC 2024. +Local time is now: Wed May 15 03:56:54 UTC 2024. +Universal Time is now: Wed May 15 03:56:54 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -2582,7 +2614,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/jalview-2.11.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../jalview_2.11.3.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/4181458/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/4181458/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/jalview-2.11.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../jalview_2.11.3.1+dfsg-1_source.changes dpkg-buildpackage: info: source package jalview dpkg-buildpackage: info: source version 2.11.3.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2638,18 +2674,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.132 secs. -The client will now receive all logging from the daemon (pid: 3556398). The daemon log file: /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/daemon/4.4.1/daemon-3556398.out.log +An attempt to start the daemon took 2.415 secs. +The client will now receive all logging from the daemon (pid: 28934). The daemon log file: /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/daemon/4.4.1/daemon-28934.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@567244d3 -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@567244d3 -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@42a21182 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6f45ded9 +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6f45ded9 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@19768b0c Starting Build Compiling initialization script '/build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@4f9fd229 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@2bb54f9a Compiling initialization script '/build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/jalview-2.11.3.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/jalview-2.11.3.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2676,73 +2712,73 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@28080530 +Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@4ccdd7be Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':copyResources', task ':copyChannelResources', task ':createBuildProperties', task ':buildResources', task ':copyDocs', task ':convertMdFiles', task ':releasesTemplates', task ':prepare', task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@42a21182 -Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@4bab9d74 -Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7b9feb0f -:copyHelp (Thread[Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@19768b0c +Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5dfaa39f +Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@189857c8 +:copyHelp (Thread[Task worker for ':' Thread 2,5,main]) started. :copyHelp Putting task artifact state for task ':copyHelp' into context took 0.001 secs. -Up-to-date check for task ':copyHelp' took 0.222 secs. It is not up-to-date because: +Up-to-date check for task ':copyHelp' took 0.156 secs. It is not up-to-date because: No history is available. -:copyHelp (Thread[Task worker for ':',5,main]) completed. Took 0.787 secs. -:buildIndices (Thread[Task worker for ':',5,main]) started. +:copyHelp (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.618 secs. +:buildIndices (Thread[Task worker for ':' Thread 2,5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. -Up-to-date check for task ':buildIndices' took 0.136 secs. It is not up-to-date because: +Up-to-date check for task ':buildIndices' took 0.157 secs. It is not up-to-date because: No history is available. Starting process 'command '/usr/lib/jvm/java-17-openjdk-arm64/bin/java''. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/resources/help_build/help Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/reproducible-path/jalview-2.11.3.1+dfsg/classes:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/varna.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/vamsas-client.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/slf4j-api.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/org.jfree.svg.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/min-jaba-client.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/miglayout.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/log4j-core.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/log4j-api.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/log4j-1.2.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jswingreader.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jsoup.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/json-simple.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/json.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jsearch-indexer.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/Jmol.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jh.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jetty9-server.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jetty9-util.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jersey1-core.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jersey1-client.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jaxrs-api.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jaxb-api.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/intervalstorej.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/httpmime.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/httpcore.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/httpclient.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/htsjdk.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/groovy-all.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/commons-discovery.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/biojava6-ontology.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/axis-jaxrpc.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/axis.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/apache-mime4j-core.jar com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-17-openjdk-arm64/bin/java'' -:buildIndices (Thread[Task worker for ':',5,main]) completed. Took 0.962 secs. -:copyResources (Thread[Task worker for ':',5,main]) started. +:buildIndices (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 1.125 secs. +:copyResources (Thread[Task worker for ':' Thread 2,5,main]) started. :copyResources Putting task artifact state for task ':copyResources' into context took 0.0 secs. -Up-to-date check for task ':copyResources' took 0.034 secs. It is not up-to-date because: +Up-to-date check for task ':copyResources' took 0.032 secs. It is not up-to-date because: No history is available. -:copyResources (Thread[Task worker for ':',5,main]) completed. Took 0.081 secs. -:copyChannelResources (Thread[Task worker for ':',5,main]) started. +:copyResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.09 secs. +:copyChannelResources (Thread[Task worker for ':' Thread 2,5,main]) started. :copyChannelResources Putting task artifact state for task ':copyChannelResources' into context took 0.0 secs. Up-to-date check for task ':copyChannelResources' took 0.011 secs. It is not up-to-date because: No history is available. -:copyChannelResources (Thread[Task worker for ':',5,main]) completed. Took 0.033 secs. -:createBuildProperties (Thread[Task worker for ':',5,main]) started. +:copyChannelResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.04 secs. +:createBuildProperties (Thread[Task worker for ':' Thread 2,5,main]) started. :createBuildProperties Putting task artifact state for task ':createBuildProperties' into context took 0.001 secs. Up-to-date check for task ':createBuildProperties' took 0.0 secs. It is not up-to-date because: Task has not declared any outputs. Starting process 'command 'sh''. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: sh debian/write_build_properties_file.sh Successfully started process 'command 'sh'' -:createBuildProperties (Thread[Task worker for ':',5,main]) completed. Took 0.206 secs. -:buildResources (Thread[Task worker for ':',5,main]) started. +:createBuildProperties (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.203 secs. +:buildResources (Thread[Task worker for ':' Thread 2,5,main]) started. :buildResources Skipping task ':buildResources' as it has no actions. -:buildResources (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. -:copyDocs (Thread[Task worker for ':',5,main]) started. +:buildResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.001 secs. +:copyDocs (Thread[Task worker for ':' Thread 2,5,main]) started. :copyDocs Putting task artifact state for task ':copyDocs' into context took 0.0 secs. -Up-to-date check for task ':copyDocs' took 0.025 secs. It is not up-to-date because: +Up-to-date check for task ':copyDocs' took 0.024 secs. It is not up-to-date because: No history is available. -:copyDocs (Thread[Task worker for ':',5,main]) completed. Took 0.109 secs. -:convertMdFiles (Thread[Task worker for ':',5,main]) started. +:copyDocs (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.152 secs. +:convertMdFiles (Thread[Task worker for ':' Thread 2,5,main]) started. :convertMdFiles Skipping task ':convertMdFiles' as it has no actions. -:convertMdFiles (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. -:releasesTemplates (Thread[Task worker for ':',5,main]) started. +:convertMdFiles (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:releasesTemplates (Thread[Task worker for ':' Thread 2,5,main]) started. :releasesTemplates Skipping task ':releasesTemplates' as it has no actions. -:releasesTemplates (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. -:prepare (Thread[Task worker for ':',5,main]) started. +:releasesTemplates (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:prepare (Thread[Task worker for ':' Thread 2,5,main]) started. :prepare Skipping task ':prepare' as it has no actions. -:prepare (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. -:compileJava (Thread[Task worker for ':',5,main]) started. +:prepare (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:compileJava (Thread[Task worker for ':' Thread 11,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.3.1+dfsg/src/main/java', not found file or directory '/build/reproducible-path/jalview-2.11.3.1+dfsg/src/main/java', not found -Up-to-date check for task ':compileJava' took 1.505 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 1.271 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileJava'. @@ -2800,32 +2836,32 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 15 warnings -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 16.723 secs. -:processResources (Thread[Task worker for ':',5,main]) started. +:compileJava (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 20.152 secs. +:processResources (Thread[Task worker for ':' Thread 11,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.054 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.103 secs. It is not up-to-date because: No history is available. -:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.216 secs. -:classes (Thread[Task worker for ':',5,main]) started. +:processResources (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.297 secs. +:classes (Thread[Task worker for ':' Thread 11,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[Task worker for ':',5,main]) started. +:classes (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[Task worker for ':' Thread 11,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/jalview-2.11.3.1+dfsg/build/debian/jalview.pom -:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.115 secs. -:jar (Thread[Task worker for ':',5,main]) started. +:debianMavenPom (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.119 secs. +:jar (Thread[Task worker for ':' Thread 11,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.139 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.083 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':',5,main]) completed. Took 0.953 secs. +:jar (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 1.037 secs. -BUILD SUCCESSFUL in 28s +BUILD SUCCESSFUL in 36s 10 actionable tasks: 10 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/jalview-2.11.3.1+dfsg' @@ -2847,17 +2883,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.076 secs. -The client will now receive all logging from the daemon (pid: 3563753). The daemon log file: /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/daemon/4.4.1/daemon-3563753.out.log -Daemon will be stopped at the end of the build stopping after processing +An attempt to start the daemon took 1.131 secs. +The client will now receive all logging from the daemon (pid: 43205). The daemon log file: /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/daemon/4.4.1/daemon-43205.out.log Closing daemon's stdin at end of input. +Daemon will be stopped at the end of the build stopping after processing The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@58a8b0c2 -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@58a8b0c2 -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@51433cc7 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@50a8871a +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@50a8871a +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4221b54 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d295c4b +Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@2227f35f Settings evaluated using settings file '/build/reproducible-path/jalview-2.11.3.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/jalview-2.11.3.1+dfsg/build.gradle'. Included projects: [root project 'jalview'] @@ -2877,77 +2913,77 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@f627c02 +Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d35d092 Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':copyResources', task ':copyChannelResources', task ':createBuildProperties', task ':buildResources', task ':copyDocs', task ':convertMdFiles', task ':releasesTemplates', task ':prepare', task ':compileJava', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':testTask0', task ':testTask1', task ':testTask2', task ':testTask3', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@51433cc7 -Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@21b02416 -Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@a9f1dda -:copyHelp (Thread[Task worker for ':' Thread 2,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4221b54 +Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@2aeb9a98 +Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.3.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@18aa06d6 +:copyHelp (Thread[Task worker for ':',5,main]) started. :copyHelp -Putting task artifact state for task ':copyHelp' into context took 0.001 secs. -Skipping task ':copyHelp' as it is up-to-date (took 0.209 secs). +Putting task artifact state for task ':copyHelp' into context took 0.002 secs. +Skipping task ':copyHelp' as it is up-to-date (took 0.222 secs). :copyHelp UP-TO-DATE -:copyHelp (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.225 secs. -:buildIndices (Thread[Task worker for ':' Thread 2,5,main]) started. +:copyHelp (Thread[Task worker for ':',5,main]) completed. Took 0.241 secs. +:buildIndices (Thread[Task worker for ':',5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. -Up-to-date check for task ':buildIndices' took 0.426 secs. It is not up-to-date because: +Up-to-date check for task ':buildIndices' took 0.447 secs. It is not up-to-date because: Input property 'classpath' file /build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/Jmol.jar has been removed. Input property 'classpath' file /build/reproducible-path/jalview-2.11.3.1+dfsg/classes/com/github/reinert/jjschema/Attributes.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/apache-mime4j-core.jar has been removed. Starting process 'command '/usr/lib/jvm/java-17-openjdk-arm64/bin/java''. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/resources/help_build/help Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/reproducible-path/jalview-2.11.3.1+dfsg/classes:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/testng.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/mockito-core.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/junit4.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jcommander.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jaxb-impl.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/guava.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/varna.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/vamsas-client.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/slf4j-api.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/org.jfree.svg.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/min-jaba-client.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/miglayout.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/log4j-core.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/log4j-api.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/log4j-1.2.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jswingreader.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jsoup.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/json-simple.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/json.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jsearch-indexer.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/Jmol.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jh.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jetty9-server.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jetty9-util.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jersey1-core.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jersey1-client.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jaxrs-api.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/jaxb-api.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/intervalstorej.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/httpmime.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/httpcore.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/httpclient.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/htsjdk.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/groovy-all.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/commons-discovery.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/biojava6-ontology.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/axis-jaxrpc.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/axis.jar:/build/reproducible-path/jalview-2.11.3.1+dfsg/cpJars/apache-mime4j-core.jar com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-17-openjdk-arm64/bin/java'' -:buildIndices (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 1.282 secs. -:copyResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:buildIndices (Thread[Task worker for ':',5,main]) completed. Took 1.316 secs. +:copyResources (Thread[Task worker for ':',5,main]) started. :copyResources Putting task artifact state for task ':copyResources' into context took 0.0 secs. -Skipping task ':copyResources' as it is up-to-date (took 0.039 secs). +Skipping task ':copyResources' as it is up-to-date (took 0.034 secs). :copyResources UP-TO-DATE -:copyResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.041 secs. -:copyChannelResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:copyResources (Thread[Task worker for ':',5,main]) completed. Took 0.038 secs. +:copyChannelResources (Thread[Task worker for ':',5,main]) started. :copyChannelResources Putting task artifact state for task ':copyChannelResources' into context took 0.0 secs. -Skipping task ':copyChannelResources' as it is up-to-date (took 0.005 secs). +Skipping task ':copyChannelResources' as it is up-to-date (took 0.01 secs). :copyChannelResources UP-TO-DATE -:copyChannelResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.009 secs. -:createBuildProperties (Thread[Task worker for ':' Thread 2,5,main]) started. +:copyChannelResources (Thread[Task worker for ':',5,main]) completed. Took 0.015 secs. +:createBuildProperties (Thread[Task worker for ':',5,main]) started. :createBuildProperties -Putting task artifact state for task ':createBuildProperties' into context took 0.001 secs. +Putting task artifact state for task ':createBuildProperties' into context took 0.003 secs. Up-to-date check for task ':createBuildProperties' took 0.0 secs. It is not up-to-date because: Task has not declared any outputs. Starting process 'command 'sh''. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: sh debian/write_build_properties_file.sh Successfully started process 'command 'sh'' -:createBuildProperties (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.156 secs. -:buildResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:createBuildProperties (Thread[Task worker for ':',5,main]) completed. Took 0.214 secs. +:buildResources (Thread[Task worker for ':',5,main]) started. :buildResources Skipping task ':buildResources' as it has no actions. -:buildResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:copyDocs (Thread[Task worker for ':' Thread 2,5,main]) started. +:buildResources (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:copyDocs (Thread[Task worker for ':',5,main]) started. :copyDocs Putting task artifact state for task ':copyDocs' into context took 0.0 secs. -Skipping task ':copyDocs' as it is up-to-date (took 0.013 secs). +Skipping task ':copyDocs' as it is up-to-date (took 0.019 secs). :copyDocs UP-TO-DATE -:copyDocs (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.016 secs. -:convertMdFiles (Thread[Task worker for ':' Thread 2,5,main]) started. +:copyDocs (Thread[Task worker for ':',5,main]) completed. Took 0.024 secs. +:convertMdFiles (Thread[Task worker for ':',5,main]) started. :convertMdFiles Skipping task ':convertMdFiles' as it has no actions. :convertMdFiles UP-TO-DATE -:convertMdFiles (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.001 secs. -:releasesTemplates (Thread[Task worker for ':' Thread 2,5,main]) started. +:convertMdFiles (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:releasesTemplates (Thread[Task worker for ':',5,main]) started. :releasesTemplates Skipping task ':releasesTemplates' as it has no actions. :releasesTemplates UP-TO-DATE -:releasesTemplates (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:prepare (Thread[Task worker for ':' Thread 2,5,main]) started. +:releasesTemplates (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:prepare (Thread[Task worker for ':',5,main]) started. :prepare Skipping task ':prepare' as it has no actions. -:prepare (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:prepare (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:compileJava (Thread[Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.3.1+dfsg/src/main/java', not found file or directory '/build/reproducible-path/jalview-2.11.3.1+dfsg/src/main/java', not found -Up-to-date check for task ':compileJava' took 1.587 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 1.868 secs. It is not up-to-date because: Input property 'classpath' file /build/reproducible-path/jalview-2.11.3.1+dfsg/classes/com/github/reinert/jjschema/Attributes.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.3.1+dfsg/classes/com/stevesoft/pat/AmpersandRule.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.3.1+dfsg/classes/com/stevesoft/pat/Any.class has been added. @@ -3006,13 +3042,13 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 15 warnings -:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 16.879 secs. -:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 16.514 secs. +:compileTestJava (Thread[Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.3.1+dfsg/src/test/java', not found file or directory '/build/reproducible-path/jalview-2.11.3.1+dfsg/src/test/java', not found -Up-to-date check for task ':compileTestJava' took 0.125 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.136 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileTestJava'. @@ -3022,23 +3058,23 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 3.902 secs. -:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 4.161 secs. +:processTestResources (Thread[Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.079 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.09 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.296 secs. -:testClasses (Thread[Task worker for ':' Thread 2,5,main]) started. +:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.334 secs. +:testClasses (Thread[Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.002 secs. -:testTask0 (Thread[Task worker for ':' Thread 2,5,main]) started. +:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:testTask0 (Thread[Task worker for ':',5,main]) started. :testTask0 Putting task artifact state for task ':testTask0' into context took 0.0 secs. -Up-to-date check for task ':testTask0' took 0.051 secs. It is not up-to-date because: +Up-to-date check for task ':testTask0' took 0.08 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath12111841371621323217txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath9920724974744618810txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. @@ -3046,16 +3082,16 @@ WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Finished generating test XML results (0.072 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/test-results/testTask0 +Finished generating test XML results (0.076 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/test-results/testTask0 Generating HTML test report... -Finished generating test html results (0.073 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask0 -:testTask0 (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 5.316 secs. -:testTask1 (Thread[Task worker for ':' Thread 2,5,main]) started. +Finished generating test html results (0.065 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask0 +:testTask0 (Thread[Task worker for ':',5,main]) completed. Took 5.347 secs. +:testTask1 (Thread[Task worker for ':',5,main]) started. :testTask1 Putting task artifact state for task ':testTask1' into context took 0.0 secs. -Up-to-date check for task ':testTask1' took 0.018 secs. It is not up-to-date because: +Up-to-date check for task ':testTask1' took 0.02 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath15706778535011983339txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath74915616604661354txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 2' Gradle Test Executor 2 started executing tests. WARNING: A terminally deprecated method in java.lang.System has been called @@ -3067,13 +3103,13 @@ Generating HTML test report... Finished generating test html results (0.005 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask1 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask1/index.html -:testTask1 (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 1.793 secs. -:testTask2 (Thread[Task worker for ':' Thread 2,5,main]) started. +:testTask1 (Thread[Task worker for ':',5,main]) completed. Took 1.989 secs. +:testTask2 (Thread[Task worker for ':',5,main]) started. :testTask2 Putting task artifact state for task ':testTask2' into context took 0.0 secs. -Up-to-date check for task ':testTask2' took 0.022 secs. It is not up-to-date because: +Up-to-date check for task ':testTask2' took 0.016 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath11714746689189867643txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' +Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath9726466560529166693txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' Successfully started process 'Gradle Test Executor 3' Gradle Test Executor 3 started executing tests. WARNING: A terminally deprecated method in java.lang.System has been called @@ -3081,17 +3117,17 @@ WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release Gradle Test Executor 3 finished executing tests. -Finished generating test XML results (0.002 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/test-results/testTask2 +Finished generating test XML results (0.001 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/test-results/testTask2 Generating HTML test report... -Finished generating test html results (0.004 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask2 +Finished generating test html results (0.003 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask2 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask2/index.html -:testTask2 (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 2.144 secs. -:testTask3 (Thread[Task worker for ':' Thread 2,5,main]) started. +:testTask2 (Thread[Task worker for ':',5,main]) completed. Took 1.993 secs. +:testTask3 (Thread[Task worker for ':',5,main]) started. :testTask3 Putting task artifact state for task ':testTask3' into context took 0.0 secs. -Up-to-date check for task ':testTask3' took 0.024 secs. It is not up-to-date because: +Up-to-date check for task ':testTask3' took 0.015 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath1584544276837171545txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' +Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/jalview-2.11.3.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath9926830326624009291txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' Successfully started process 'Gradle Test Executor 4' Gradle Test Executor 4 started executing tests. WARNING: A terminally deprecated method in java.lang.System has been called @@ -3099,34 +3135,34 @@ WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release Gradle Test Executor 4 finished executing tests. -Finished generating test XML results (0.001 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/test-results/testTask3 +Finished generating test XML results (0.002 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/test-results/testTask3 Generating HTML test report... Finished generating test html results (0.004 secs) into: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask3 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask3/index.html -:testTask3 (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 1.834 secs. -:test (Thread[Task worker for ':' Thread 2,5,main]) started. +:testTask3 (Thread[Task worker for ':',5,main]) completed. Took 1.903 secs. +:test (Thread[Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Skipping task ':test' as it has no source files and no previous output files. :test NO-SOURCE -:test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.003 secs. +:test (Thread[Task worker for ':',5,main]) completed. Took 0.002 secs. BUILD SUCCESSFUL in 40s 13 actionable tasks: 9 executed, 4 up-to-date ┌─────────────────────────────────────────────────────────────────────────────────────────────────────┐ -│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 3.193 seconds│ +│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 3.285 seconds│ │Report file: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask0/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.692 seconds │ +│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.877 seconds │ │Report file: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask1/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 2.040 seconds │ +│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.902 seconds │ │Report file: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask2/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.731 seconds │ +│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.823 seconds │ │Report file: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask3/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 8.656 seconds │ +│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 8.887 seconds │ └─────────────────────────────────────────────────────────────────────────────────────────────────────┘ FAILURE: Build failed with an exception. @@ -3236,19 +3272,19 @@ BUILD FAILED in 40s 13 actionable tasks: 9 executed, 4 up-to-date ┌─────────────────────────────────────────────────────────────────────────────────────────────────────┐ -│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 3.193 seconds│ +│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 3.285 seconds│ │Report file: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask0/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.692 seconds │ +│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.877 seconds │ │Report file: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask1/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 2.040 seconds │ +│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.902 seconds │ │Report file: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask2/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.731 seconds │ +│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 1.823 seconds │ │Report file: /build/reproducible-path/jalview-2.11.3.1+dfsg/build/reports/tests/testTask3/index.html │ ├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 8.656 seconds │ +│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 8.887 seconds │ └─────────────────────────────────────────────────────────────────────────────────────────────────────┘ FAILURE: Build failed with an exception. @@ -3351,7 +3387,7 @@ * Get more help at https://help.gradle.org -BUILD FAILED in 41s +BUILD FAILED in 40s dh_auto_test: error: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=jalview -Dfile.encoding=UTF-8 --parallel --max-workers=12 test returned exit code 1 echo "------------------------------" ------------------------------ @@ -3404,12 +3440,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4181458/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4181458/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3539382 and its subdirectories -I: Current time: Tue May 14 15:55:02 -12 2024 -I: pbuilder-time-stamp: 1715745302 +I: removing directory /srv/workspace/pbuilder/4181458 and its subdirectories +I: Current time: Wed May 15 17:59:53 +14 2024 +I: pbuilder-time-stamp: 1715745593