Diff of the two buildlogs: -- --- b1/build.log 2024-04-27 18:51:34.338897510 +0000 +++ b2/build.log 2024-04-27 18:54:14.640049289 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 27 06:49:58 -12 2024 -I: pbuilder-time-stamp: 1714243798 +I: Current time: Sat May 31 15:14:36 +14 2025 +I: pbuilder-time-stamp: 1748654076 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/879848/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/903413/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 31 01:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/903413/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/903413/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='f3126d600955483295ac5dd2cb523beb' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='879848' - PS1='# ' - PS2='> ' + INVOCATION_ID=4520fbb3a5b7412788bc982d96716406 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=903413 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7lYbGJLp/pbuilderrc_427j --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7lYbGJLp/b1 --logfile b1/build.log ivar_1.4.2+dfsg-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7lYbGJLp/pbuilderrc_JytG --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7lYbGJLp/b2 --logfile b2/build.log ivar_1.4.2+dfsg-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 21 07:15 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/879848/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 26 17:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/903413/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -200,7 +232,7 @@ Get: 46 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.1+really5.4.5-1 [289 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.19+ds-1 [1603 kB] -Fetched 26.4 MB in 0s (143 MB/s) +Fetched 26.4 MB in 0s (97.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). @@ -414,7 +446,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ivar-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.2+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/903413/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/903413/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ivar-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ivar_1.4.2+dfsg-3_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -505,13 +541,6 @@ Making all in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none @@ -522,87 +551,10 @@ Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccrzz4hi.s -Using built-in specs. -COLLECT_GCC=g++ -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -Using built-in specs. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccC45L4m.s -Using built-in specs. -COLLECT_GCC=g++ -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp -g=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cclJmO8p.s -Using built-in specs. -COLLECT_GCC=g++ -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccBM9c7i.s -COLLECT_GCC=g++ -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapUsing built-in specs. -=/build/reproducible-path/ivar-1.4.2+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccGz8cgG.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) - compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + compiled by GNU C version 13.2.0, Compiler executable checksum: a1GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) - compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - +a6ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/../../../../aarch64-linux-gnu/include" #include "..." search starts here: -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 #include <...> search starts here: . .. @@ -648,6 +607,35 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. +4c68253cb7a9d51e358b33Using built-in specs. +eece5f +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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'-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccy2lHtp.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp +Using built-in specs. +Compiler executable checksum: a1a6COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +4cCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccSqJOhP.s +68253cb7a9d51e358b33eece5f +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed/aarch64-linux-gnu" @@ -664,22 +652,32 @@ /usr/local/include /usr/include/aarch64-linux-gnu /usr/include +End of search list. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) - compiled by GNU C version 13.2.0, End of search list. + compiled by GNU C version 13.2.0, Using built-in specs. +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccgcofrz.s GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) - compiled by GNU C version 13.2.0, ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" +Compiler executable checksum: ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" +ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/../../../../aarch64-linux-gnu/include" -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - #include "..." search starts here: #include <...> search starts here: . +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp .. /usr/include/c++/13 /usr/include/aarch64-linux-gnu/c++/13 @@ -689,6 +687,10 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. +a1a64c68253cb7a9d51e358b33eece5f +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) + compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" @@ -707,23 +709,42 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) - compiled by GNU C version 13.2.0, GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) +Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccuW2O9f.s +Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f +Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccscUt63.s +Compiler executable checksum: GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed/aarch64-linux-gnu" +a1a64c68253cb7a9d51e358b33eece5f ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/../../../../aarch64-linux-gnu/include" #include "..." search starts here: -ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" -ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed/aarch64-linux-gnu" #include <...> search starts here: . .. @@ -735,6 +756,24 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) + compiled by GNU C version 13.2.0, Using built-in specs. +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccmATvkM.s +GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" +ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/13/../../../../aarch64-linux-gnu/include" #include "..." search starts here: @@ -749,7 +788,10 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp +Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 @@ -759,9 +801,12 @@ Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccw4qUbW.s + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccQzHOjG.s +Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) - compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP + compiled by GNU C version 13.2.0, Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp +GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" @@ -781,6 +826,16 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 13.2.0 (Debian 13.2.0-23) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc4g0NVP.s GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP @@ -802,12 +857,8 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f -Compiler executable checksum: a1a64c68253cb7a9d5Compiler executable checksum: 1e358b33eece5f -a1a64c68253cb7a9Compiler executable checksum: d5g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp -1e358b33eece5f Using built-in specs. -a1a64c68253cb7a9d51e358b33eece5f +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 @@ -816,28 +867,23 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapCompiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f -=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-timeCompiler executable checksum: -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc4PkWMa.s -a1a64c68253cb7Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f -a9d51e358b33eece5f -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp -Using built-in specs. -COLLECT_GCC=g++ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc8LusSw.s +Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f +GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) + compiled by GNU C version 13.2.0, Using built-in specs. +Compiler executable checksum: a1COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu Thread model: posix -Compiler executable checksum: Supported LTO compression algorithms: zlib zstd +Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) -a1COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc4GgFD6.s -a64c68253cb7a9d51e358b33eece5f -Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f -Using built-in specs. -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) - compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP +a64c68253cb7a9COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' +d5 /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cceDYKys.s +1e358b33eece5f +GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/13" @@ -857,17 +903,8 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -COLLECT_GCC=g++ -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-23' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 13.2.0 (Debian 13.2.0-23) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccRW5WVc.s GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) + compiled by GNU C version 13.2.0, GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 @@ -888,8 +925,6 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) - compiled by GNU C version 13.2.0, Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 @@ -912,8 +947,9 @@ End of search list. Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f +Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o alignment.o /tmp/cclJmO8p.s + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o alignment.o /tmp/ccy2lHtp.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ @@ -930,7 +966,7 @@ Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccWaJaqo.s + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccK15trX.s GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP @@ -954,7 +990,7 @@ End of search list. Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o remove_reads_from_amplicon.o /tmp/ccen8SeS.s + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o remove_reads_from_amplicon.o /tmp/ccuW2O9f.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ @@ -971,7 +1007,7 @@ Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-23) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccSSSoWw.s + /usr/libexec/gcc/aarch64-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cchz4K3S.s GNU C++17 (Debian 13.2.0-23) version 13.2.0 (aarch64-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP @@ -994,85 +1030,85 @@ /usr/include End of search list. Compiler executable checksum: a1a64c68253cb7a9d51e358b33eece5f -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o allele_functions.o /tmp/ccw4qUbW.s -GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_common_variants.o /tmp/cc4GgFD6.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_masked_amplicons.o /tmp/cc4g0NVP.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'allele_functions.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o interval_tree.o /tmp/ccSSSoWw.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_masked_amplicons.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_variants.o /tmp/ccscUt63.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 +COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_variants.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_common_variants.o /tmp/cc8LusSw.s +GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_common_variants.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ivar.o /tmp/cc1zYfh2.s +GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 +MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'interval_tree.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_variants.o /tmp/ccfUix47.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o interval_tree.o /tmp/cchz4K3S.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_masked_amplicons.o /tmp/cc4PkWMa.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o allele_functions.o /tmp/ccQzHOjG.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_masked_amplicons.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'interval_tree.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o suffix_tree.o /tmp/ccSqJOhP.s +GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_variants.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'allele_functions.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o primer_bed.o /tmp/ccSJhJ5v.s -GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ivar.o /tmp/ccrzz4hi.s + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o primer_bed.o /tmp/ccmATvkM.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'suffix_tree.' MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'primer_bed.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o suffix_tree.o /tmp/ccBM9c7i.sCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map -=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_consensus_pileup.o /tmp/ccC45L4m.s -GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 -GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ref_seq.o /tmp/ccWaJaqo.s + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ref_seq.o /tmp/ccK15trX.s +GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_consensus_pileup.o /tmp/ccGz8cgG.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_consensus_pileup.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ref_seq.' MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'suffix_tree.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_consensus_pileup.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o trim_primer_quality.o /tmp/ccwq9GHd.s + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o trim_primer_quality.o /tmp/ccgcofrz.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ref_seq.' -MAKEFLAGS=w -j12 -COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'trim_primer_quality.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o parse_gff.o /tmp/ccRW5WVc.s + as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o parse_gff.o /tmp/cceDYKys.s GNU assembler version 2.42 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.42 MAKEFLAGS=w -j12 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ @@ -1093,7 +1129,7 @@ COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' - /usr/libexec/gcc/aarch64-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/ccvsMltx.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o + /usr/libexec/gcc/aarch64-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/ccV9DiPj.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' Making all in tests @@ -1233,11 +1269,11 @@ COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/13/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/13/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' - /usr/libexec/gcc/aarch64-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/cc2vj0Yw.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o + /usr/libexec/gcc/aarch64-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/ccmsTBGz.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.2+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' -make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/ivar-1.4.2+dfsg/debian/tmp/usr/bin' +make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c ivar '/build/reproducible-path/ivar-1.4.2+dfsg/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.2+dfsg/src' @@ -1284,12 +1320,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/903413/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/903413/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/879848 and its subdirectories -I: Current time: Sat Apr 27 06:51:33 -12 2024 -I: pbuilder-time-stamp: 1714243893 +I: removing directory /srv/workspace/pbuilder/903413 and its subdirectories +I: Current time: Sat May 31 15:17:12 +14 2025 +I: pbuilder-time-stamp: 1748654232