Diff of the two buildlogs: -- --- b1/build.log 2024-12-14 19:12:28.849389075 +0000 +++ b2/build.log 2024-12-14 19:13:23.070918710 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Dec 14 07:11:42 -12 2024 -I: pbuilder-time-stamp: 1734203502 +I: Current time: Sun Dec 15 09:12:32 +14 2024 +I: pbuilder-time-stamp: 1734203552 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying 0004-check-same-tempdir.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/890609/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1210371/tmp/hooks/D01_modify_environment starting +debug: Running on codethink02-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 14 19:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1210371/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1210371/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='efd4fef8ad484519889fc5eafcadf9e0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='890609' - PS1='# ' - PS2='> ' + INVOCATION_ID=526179886468484faa1216a41185fd88 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1210371 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3YvKOS7B/pbuilderrc_MtLl --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3YvKOS7B/b1 --logfile b1/build.log golang-github-biogo-hts_1.4.5+dfsg1-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3YvKOS7B/pbuilderrc_D1SW --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3YvKOS7B/b2 --logfile b2/build.log golang-github-biogo-hts_1.4.5+dfsg1-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/890609/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1210371/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -169,7 +201,7 @@ Get: 48 http://deb.debian.org/debian trixie/main arm64 golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] -Fetched 71.5 MB in 0s (221 MB/s) +Fetched 71.5 MB in 0s (177 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20082 files and directories currently installed.) @@ -384,7 +416,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/golang-github-biogo-hts-1.4.5+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.5+dfsg1-1_source.changes +I: user script /srv/workspace/pbuilder/1210371/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1210371/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-biogo-hts-1.4.5+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.5+dfsg1-1_source.changes dpkg-buildpackage: info: source package golang-github-biogo-hts dpkg-buildpackage: info: source version 1.4.5+dfsg1-1 dpkg-buildpackage: info: source distribution unstable @@ -403,37 +439,37 @@ dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang cd obj-aarch64-linux-gnu && go install -trimpath -v -p 12 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix -internal/coverage/rtcov -internal/godebugs internal/goarch -internal/byteorder internal/profilerecord -unicode/utf8 -internal/race -internal/goexperiment +internal/goos +internal/coverage/rtcov internal/unsafeheader +internal/godebugs +internal/race +internal/byteorder +internal/runtime/syscall runtime/internal/math -unicode sync/atomic +internal/cpu +internal/goexperiment internal/abi -internal/goos -internal/runtime/syscall +unicode +runtime/internal/sys +unicode/utf8 cmp -internal/chacha8rand internal/itoa math/bits -internal/cpu internal/asan +internal/chacha8rand internal/msan github.com/ulikunitz/xz/internal/hash -runtime/internal/sys +internal/bytealg +internal/runtime/atomic github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 math -internal/bytealg -internal/runtime/atomic -internal/stringslite internal/runtime/exithook +internal/stringslite runtime internal/reflectlite iter @@ -443,16 +479,16 @@ internal/testlog errors sort -internal/oserror io +internal/oserror path strconv syscall internal/godebug +bytes hash -container/heap strings -bytes +container/heap hash/crc32 reflect bufio @@ -469,11 +505,11 @@ fmt encoding/hex net/url -github.com/ulikunitz/xz/internal/xlog encoding/csv compress/flate -github.com/biogo/hts/fai +github.com/ulikunitz/xz/internal/xlog github.com/ulikunitz/xz/lzma +github.com/biogo/hts/fai compress/gzip github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/index @@ -491,14 +527,14 @@ ? github.com/biogo/hts/internal [no test files] === RUN Test OK: 15 passed ---- PASS: Test (0.09s) +--- PASS: Test (0.10s) === RUN TestFuzzCrashers bam_test.go:2485: run out of memory --- SKIP: TestFuzzCrashers (0.00s) === RUN TestMerger ---- PASS: TestMerger (0.11s) +--- PASS: TestMerger (0.09s) PASS -ok github.com/biogo/hts/bam 0.215s +ok github.com/biogo/hts/bam 0.204s === RUN TestEmpty --- PASS: TestEmpty (0.00s) === RUN TestEOF @@ -506,7 +542,7 @@ === RUN TestRoundTrip --- PASS: TestRoundTrip (0.00s) === RUN TestRoundTripMulti ---- PASS: TestRoundTripMulti (0.00s) +--- PASS: TestRoundTripMulti (0.01s) === RUN TestHeaderIssue57 --- PASS: TestHeaderIssue57 (0.00s) === RUN TestRoundTripMultiSeek @@ -514,9 +550,9 @@ === RUN TestSeekErrorDeadlock --- PASS: TestSeekErrorDeadlock (0.00s) === RUN TestSeekFast ---- PASS: TestSeekFast (0.03s) +--- PASS: TestSeekFast (0.01s) === RUN TestCache ---- PASS: TestCache (0.20s) +--- PASS: TestCache (0.13s) === RUN TestBlocked --- PASS: TestBlocked (0.00s) === RUN TestFuzzCrashers @@ -528,27 +564,27 @@ === RUN TestSeekCacheReadahead --- PASS: TestSeekCacheReadahead (0.10s) PASS -ok github.com/biogo/hts/bgzf 0.362s +ok github.com/biogo/hts/bgzf 0.276s === RUN Test OK: 3 passed --- PASS: Test (0.02s) PASS -ok github.com/biogo/hts/bgzf/index 0.038s +ok github.com/biogo/hts/bgzf/index 0.034s === RUN TestRoundTrip --- PASS: TestRoundTrip (0.00s) === RUN TestKnownValues --- PASS: TestKnownValues (0.00s) PASS -ok github.com/biogo/hts/cram/encoding/itf8 0.008s +ok github.com/biogo/hts/cram/encoding/itf8 0.012s === RUN TestInt64RoundTrip --- PASS: TestInt64RoundTrip (0.00s) PASS -ok github.com/biogo/hts/cram/encoding/ltf8 0.010s +ok github.com/biogo/hts/cram/encoding/ltf8 0.011s === RUN Test OK: 3 passed --- PASS: Test (0.00s) PASS -ok github.com/biogo/hts/csi 0.018s +ok github.com/biogo/hts/csi 0.022s === RUN TestNewIndex --- PASS: TestNewIndex (0.00s) === RUN TestReadFrom @@ -558,7 +594,7 @@ === RUN TestFile --- PASS: TestFile (0.00s) PASS -ok github.com/biogo/hts/fai 0.013s +ok github.com/biogo/hts/fai 0.021s === RUN Test OK: 20 passed --- PASS: Test (0.00s) @@ -572,7 +608,7 @@ OK: 1 passed --- PASS: Test (0.00s) PASS -ok github.com/biogo/hts/tabix 0.016s +ok github.com/biogo/hts/tabix 0.015s create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang @@ -600,12 +636,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1210371/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1210371/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/890609 and its subdirectories -I: Current time: Sat Dec 14 07:12:27 -12 2024 -I: pbuilder-time-stamp: 1734203547 +I: removing directory /srv/workspace/pbuilder/1210371 and its subdirectories +I: Current time: Sun Dec 15 09:13:20 +14 2024 +I: pbuilder-time-stamp: 1734203600