Diff of the two buildlogs: -- --- b1/build.log 2024-05-14 18:05:38.671461372 +0000 +++ b2/build.log 2024-05-14 18:07:32.714608742 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 14 06:04:40 -12 2024 -I: pbuilder-time-stamp: 1715709880 +I: Current time: Tue Jun 17 14:28:43 +14 2025 +I: pbuilder-time-stamp: 1750120123 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying lapacke.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3606027/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2812649/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 17 00:28 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2812649/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2812649/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='86e54a1da171405d87aafcfe6141c98f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3606027' - PS1='# ' - PS2='> ' + INVOCATION_ID=29070e23c0c5400393f0ac9c13537e67 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2812649 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.62HwF6fP/pbuilderrc_eB3V --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.62HwF6fP/b1 --logfile b1/build.log eigensoft_8.0.0+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.62HwF6fP/pbuilderrc_erG2 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.62HwF6fP/b2 --logfile b2/build.log eigensoft_8.0.0+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 11:38 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3606027/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 16 17:48 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2812649/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -167,7 +199,7 @@ Get: 45 http://deb.debian.org/debian trixie/main arm64 liblapacke arm64 3.12.0-3 [336 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libtmglib-dev arm64 3.12.0-3 [101 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 liblapacke-dev arm64 3.12.0-3 [322 kB] -Fetched 37.1 MB in 1s (66.3 MB/s) +Fetched 37.1 MB in 0s (100 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) @@ -376,7 +408,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/eigensoft-8.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../eigensoft_8.0.0+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/2812649/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2812649/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/eigensoft-8.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../eigensoft_8.0.0+dfsg-2_source.changes dpkg-buildpackage: info: source package eigensoft dpkg-buildpackage: info: source version 8.0.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -823,21 +859,21 @@ chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/99/44c325eba7302e784e0af7c24bc6a3d92c30b2.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/pcatoy objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/99/44c325eba7302e784e0af7c24bc6a3d92c30b2.debug debian/eigensoft/usr/bin/pcatoy - install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67 - objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/baseprog debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/6c05f84d3c4abd7e2b7839b98a9e749a4179b5.debug - chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/6c05f84d3c4abd7e2b7839b98a9e749a4179b5.debug - strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/baseprog - objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/6c05f84d3c4abd7e2b7839b98a9e749a4179b5.debug debian/eigensoft/usr/bin/baseprog - install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/30 - objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/pca debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/30/25f0a37279388d9af1c6ba73c0f7b729318063.debug - chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/30/25f0a37279388d9af1c6ba73c0f7b729318063.debug - strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/pca - objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/30/25f0a37279388d9af1c6ba73c0f7b729318063.debug debian/eigensoft/usr/bin/pca install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/mergeit debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/95/d74cc1c050b62c4a355abb23577ae032d049d9.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/95/d74cc1c050b62c4a355abb23577ae032d049d9.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/mergeit objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/95/d74cc1c050b62c4a355abb23577ae032d049d9.debug debian/eigensoft/usr/bin/mergeit + install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/30 + objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/pca debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/30/25f0a37279388d9af1c6ba73c0f7b729318063.debug + chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/30/25f0a37279388d9af1c6ba73c0f7b729318063.debug + strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/pca + objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/30/25f0a37279388d9af1c6ba73c0f7b729318063.debug debian/eigensoft/usr/bin/pca + install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67 + objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/baseprog debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/6c05f84d3c4abd7e2b7839b98a9e749a4179b5.debug + chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/6c05f84d3c4abd7e2b7839b98a9e749a4179b5.debug + strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/baseprog + objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/67/6c05f84d3c4abd7e2b7839b98a9e749a4179b5.debug debian/eigensoft/usr/bin/baseprog install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/eigenstratQTL debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/82/ce9e17ed5d7c528b84431debaad161c09b2f2f.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/82/ce9e17ed5d7c528b84431debaad161c09b2f2f.debug @@ -859,7 +895,7 @@ rm -f debian/eigensoft/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/eigensoft/DEBIAN - dpkg-shlibdeps -Tdebian/eigensoft.substvars debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/eigenstrat + dpkg-shlibdeps -Tdebian/eigensoft.substvars debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/eigenstrat dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/lib/eigensoft/smartpca was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb install -m0755 -d debian/eigensoft/DEBIAN @@ -880,10 +916,10 @@ cd debian/.debhelper/eigensoft/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/eigensoft .. dpkg-deb --root-owner-group --build debian/.debhelper/eigensoft/dbgsym-root .. -dpkg-deb: building package 'eigensoft' in '../eigensoft_8.0.0+dfsg-2_arm64.deb'. + dpkg-deb --root-owner-group --build debian/eigensoft .. dpkg-deb: building package 'eigensoft-dbgsym' in '../eigensoft-dbgsym_8.0.0+dfsg-2_arm64.deb'. +dpkg-deb: building package 'eigensoft' in '../eigensoft_8.0.0+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../eigensoft_8.0.0+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../eigensoft_8.0.0+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -891,12 +927,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2812649/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2812649/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3606027 and its subdirectories -I: Current time: Tue May 14 06:05:37 -12 2024 -I: pbuilder-time-stamp: 1715709937 +I: removing directory /srv/workspace/pbuilder/2812649 and its subdirectories +I: Current time: Tue Jun 17 14:30:31 +14 2025 +I: pbuilder-time-stamp: 1750120231