Diff of the two buildlogs:
--
--- b1/build.log 2025-02-03 01:50:35.095100882 +0000
+++ b2/build.log 2025-02-03 01:54:21.736912191 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Sat Mar 7 20:05:07 -12 2026
-I: pbuilder-time-stamp: 1772957107
+I: Current time: Mon Feb 3 15:50:38 +14 2025
+I: pbuilder-time-stamp: 1738547438
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
@@ -27,52 +27,84 @@
dpkg-source: info: applying privacy
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/1664560/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/1499161/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink04-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Feb 3 01:50 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/1499161/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/1499161/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='arm64'
- DEBIAN_FRONTEND='noninteractive'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=arm64
+ DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
- DISTRIBUTION='trixie'
- HOME='/root'
- HOST_ARCH='arm64'
+ DIRSTACK=()
+ DISTRIBUTION=trixie
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=aarch64
+ HOST_ARCH=arm64
IFS='
'
- INVOCATION_ID='734eb3392500474b841fac671ec43bee'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='1664560'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=fce5f23518604308a03003d2fd26be72
+ LANG=C
+ LANGUAGE=nl_BE:nl
+ LC_ALL=C
+ MACHTYPE=aarch64-unknown-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=1499161
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Uu85HgiT/pbuilderrc_KJ7b --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Uu85HgiT/b1 --logfile b1/build.log cwltool_3.1.20250110105449-3.dsc'
- SUDO_GID='109'
- SUDO_UID='104'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://192.168.101.4:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Uu85HgiT/pbuilderrc_9Qfh --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Uu85HgiT/b2 --logfile b2/build.log cwltool_3.1.20250110105449-3.dsc'
+ SUDO_GID=109
+ SUDO_UID=104
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://192.168.101.4:3128
I: uname -a
- Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/1664560/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/1499161/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -439,7 +471,7 @@
Get: 251 http://deb.debian.org/debian trixie/main arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB]
Get: 252 http://deb.debian.org/debian trixie/main arm64 python3-sphinxcontrib.autoprogram all 0.1.9-1 [10.6 kB]
Get: 253 http://deb.debian.org/debian trixie/main arm64 python3-spython all 0.3.13-2 [55.2 kB]
-Fetched 120 MB in 1s (110 MB/s)
+Fetched 120 MB in 1s (225 MB/s)
Preconfiguring packages ...
Selecting previously unselected package fonts-lato.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19962 files and directories currently installed.)
@@ -1260,8 +1292,8 @@
Setting up tzdata (2024b-6) ...
Current default time zone: 'Etc/UTC'
-Local time is now: Sun Mar 8 08:06:25 UTC 2026.
-Universal Time is now: Sun Mar 8 08:06:25 UTC 2026.
+Local time is now: Mon Feb 3 01:51:10 UTC 2025.
+Universal Time is now: Mon Feb 3 01:51:10 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up autotools-dev (20220109.1) ...
@@ -1495,7 +1527,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/cwltool-3.1.20250110105449/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cwltool_3.1.20250110105449-3_source.changes
+I: user script /srv/workspace/pbuilder/1499161/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/1499161/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/cwltool-3.1.20250110105449/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cwltool_3.1.20250110105449-3_source.changes
dpkg-buildpackage: info: source package cwltool
dpkg-buildpackage: info: source version 3.1.20250110105449-3
dpkg-buildpackage: info: source distribution unstable
@@ -3573,7 +3609,7 @@
Copying cwltool.egg-info to build/bdist.linux-aarch64/wheel/./cwltool-3.1.20250110105449.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/cwltool-3.1.20250110105449.dist-info/WHEEL
-creating '/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/.tmp-v8k_9omd/cwltool-3.1.20250110105449-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
+creating '/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/.tmp-gdxtz0ik/cwltool-3.1.20250110105449-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'cwltool/__init__.py'
adding 'cwltool/__main__.py'
adding 'cwltool/_version.py'
@@ -5751,7 +5787,7 @@
Copying cwltool.egg-info to build/bdist.linux-aarch64/wheel/./cwltool-3.1.20250110105449.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/cwltool-3.1.20250110105449.dist-info/WHEEL
-creating '/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/.tmp-tv61f9ic/cwltool-3.1.20250110105449-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
+creating '/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/.tmp-ag4khcxq/cwltool-3.1.20250110105449-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'cwltool/__init__.py'
adding 'cwltool/__main__.py'
adding 'cwltool/_version.py'
@@ -6710,8 +6746,8 @@
make[1]: Entering directory '/build/reproducible-path/cwltool-3.1.20250110105449'
PYTHONPATH=/build/reproducible-path/cwltool-3.1.20250110105449/cwltool /usr/bin/make docs
make[2]: Entering directory '/build/reproducible-path/cwltool-3.1.20250110105449'
-/bin/sh: 1: git: not found
-/bin/sh: 1: git: not found
+/bin/sh: line 1: git: command not found
+/bin/sh: line 1: git: command not found
cd docs && /usr/bin/make html
make[3]: Entering directory '/build/reproducible-path/cwltool-3.1.20250110105449/docs'
Running Sphinx v8.1.3
@@ -7035,45 +7071,45 @@
created: 12/12 workers
12 workers [671 items]
-...........ssss.....s...ssss.........s...............sssssss............ [ 10%]
-..s...ssss..................ssss.......sssssss.............s............ [ 21%]
-........................ss...............sss............................ [ 32%]
-.............................sssssssssssss.......................sss.... [ 42%]
-............ssssssssssssssss.sss..........ssss...................s...s.. [ 53%]
-............s...ss...........sssssssss...ssssss.....s..................s [ 64%]
-sssssssssssss.....s......sss..........s.........ss.s.....sss............ [ 75%]
-..ssssssss.ss......sss.......s..ssssssssss........sssssssssssssss....... [ 85%]
-.....ssss............ss.sss............................................. [ 96%]
-....................... [100%]
+ssssssss...s......s.......................................s............. [ 10%]
+.......................sss.....................ssssssssssssssssssss..... [ 21%]
+........................ss...sss........................................ [ 32%]
+............ssss.sss.ssssss.....................................sss..... [ 42%]
+...........sssssssssssssssssss.........ssss.............s.s............. [ 53%]
+...............s...ss.sssss.ssssssssss...s..............ssssssssssssss.. [ 64%]
+.....................sss.ss............s.ss.......ss.s..........s.....s. [ 75%]
+.ssssssss......s..s.........sss......sssssssssssssss.................... [ 85%]
+..ssss.............sssss.........ssss........................ss......... [ 96%]
+.........s.........s..s [100%]
=============================== warnings summary ===============================
cwltool/tests/test_dependencies.py:28: 12 warnings
/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/build/cwltool/tests/test_dependencies.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.flaky(retries=3)
-.pybuild/cpython3_3.12/build/cwltool/tests/test_ext.py: 10 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_examples.py: 136 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_ext.py: 10 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_mpi.py: 14 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_fetch.py: 2 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_subgraph.py: 26 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_procgenerator.py: 6 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_fetch.py: 2 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_conditionals.py: 2 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_loop.py: 48 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_procgenerator.py: 6 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_rdfprint.py: 2 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_loop.py: 48 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_toolargparse.py: 6 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_load_contents.py: 2 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_input_deps.py: 8 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_loop_ext.py: 56 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_load_contents.py: 2 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_toolargparse.py: 6 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_cwl_version.py: 4 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_trs.py: 4 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_target.py: 6 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_user_agent.py: 2 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_docker.py: 2 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_relocate.py: 4 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_validate.py: 12 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_empty_input.py: 2 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_iwdr.py: 6 warnings
-.pybuild/cpython3_3.12/build/cwltool/tests/test_tmpdir.py: 4 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_validate.py: 12 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_relocate.py: 4 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_environment.py: 6 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_tmpdir.py: 4 warnings
+.pybuild/cpython3_3.12/build/cwltool/tests/test_iwdr.py: 6 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_misc_cli.py: 14 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_schemadef.py: 2 warnings
.pybuild/cpython3_3.12/build/cwltool/tests/test_stdout_stderr_log_dir.py: 6 warnings
@@ -7094,7 +7130,6 @@
conj_graph = ConjunctiveGraph(store=graph.store)
.pybuild/cpython3_3.12/build/cwltool/tests/test_examples.py::test_js_console_cmd_line_tool[]
-.pybuild/cpython3_3.12/build/cwltool/tests/test_examples.py::test_js_console_cmd_line_tool[--parallel --debug]
/usr/lib/python3/dist-packages/cwl_utils/sandboxjs.py:476: FutureWarning: Possible nested set at position 2
re.findall(r"^[[](?:log|err)[]].*$", stderr, flags=re.MULTILINE)
@@ -7102,11 +7137,11 @@
=========================== short test summary info ============================
SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1164: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the singularity executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1191: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1191: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1215: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1236: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1261: Requires the docker executable on the system path.
@@ -7132,15 +7167,15 @@
SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_relocate.py:12: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_relocate.py:18: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed
SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed
SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed
SKIPPED [1] cwltool/tests/test_dependencies.py:116: modulecmd not installed
SKIPPED [1] cwltool/tests/test_dependencies.py:140: modulecmd not installed
+SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_docker.py:21: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_docker.py:57: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_docker.py:71: Requires the docker executable on the system path.
@@ -7156,23 +7191,21 @@
SKIPPED [1] cwltool/tests/test_docker.py:244: Requires the singularity executable on the system path.
SKIPPED [1] cwltool/tests/test_docker.py:269: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_docker_info.py:4: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_tmpdir.py:229: Requires the singularity executable on the system path.
-SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:199: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:199: Requires the singularity executable on the system path.
-SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:219: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:219: Requires the singularity executable on the system path.
+SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_misc_cli.py:49: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path.
SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path.
-SKIPPED [1] cwltool/tests/test_misc_cli.py:49: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path.
@@ -7197,7 +7230,9 @@
SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_singularity.py:20: Requires that version 2.6.x of singularity executable version is on the system path.
SKIPPED [1] cwltool/tests/test_singularity.py:45: Requires the singularity executable on the system path.
-=============== 499 passed, 172 skipped, 423 warnings in 43.39s ================
+SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path.
+=============== 499 passed, 172 skipped, 422 warnings in 15.16s ================
I: pybuild pybuild:334: rm -Rf /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/build/tmp/ /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/build/main.cwl /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.12/build/output.txt*
I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n 12 --ignore cwltool/schemas/ -rs --pyargs cwltool
============================= test session starts ==============================
@@ -7208,49 +7243,49 @@
created: 12/12 workers
12 workers [671 items]
-..ss.sss......s....sssss.........s...........sssss.......sss......ss.... [ 10%]
-ssssss...................................ssss...ss...................... [ 21%]
-........................ss..................sss......................... [ 32%]
-...............................s.ssssssssssss...............sss......... [ 42%]
-............ssss.......ssss..sssssssssssssss...................s...s.... [ 53%]
-....................ssssss....ss.ssssssss.s.......ss.ssssssssssssss..... [ 64%]
-.................ss.......s..ss.....sss...........s.s..............sss.. [ 75%]
-...s....s......ssssssss.sss.............ssss............sssssssssssssss. [ 85%]
-................................sssssssss.................ss............ [ 96%]
-.........s........s...s [100%]
+.............s...s......s................................sssssssssssssss [ 10%]
+ssssssssssssssss........................................................ [ 21%]
+........................ss....sss....................................... [ 32%]
+sssssssssssss........................................................... [ 42%]
+.....sss...sssssssssssssssssss...........s...ssss.......s............... [ 53%]
+.......s.....sssssssss....ss....ssss.sss.............ssssssssssssss..... [ 64%]
+...........sss...............ss..s......ss..sss...............sssssss.s. [ 75%]
+.s.s........s......s.....sss.......sssssssss.ssssss.....ssssssss........ [ 85%]
+.............................sssss...ssss...........................s... [ 96%]
+....................... [100%]
=============================== warnings summary ===============================
cwltool/tests/test_dependencies.py:28: 12 warnings
/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/cwltool/tests/test_dependencies.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.flaky(retries=3)
-.pybuild/cpython3_3.13/build/cwltool/tests/test_examples.py: 136 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_ext.py: 10 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_examples.py: 136 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_mpi.py: 14 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_subgraph.py: 26 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_fetch.py: 2 warnings
-.pybuild/cpython3_3.13/build/cwltool/tests/test_conditionals.py: 2 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_procgenerator.py: 6 warnings
-.pybuild/cpython3_3.13/build/cwltool/tests/test_toolargparse.py: 6 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_conditionals.py: 2 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_rdfprint.py: 2 warnings
-.pybuild/cpython3_3.13/build/cwltool/tests/test_load_contents.py: 2 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_loop.py: 48 warnings
-.pybuild/cpython3_3.13/build/cwltool/tests/test_loop_ext.py: 56 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_input_deps.py: 8 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_load_contents.py: 2 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_toolargparse.py: 6 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_cwl_version.py: 4 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_trs.py: 4 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_loop_ext.py: 56 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_target.py: 6 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_user_agent.py: 2 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_docker.py: 2 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_validate.py: 12 warnings
-.pybuild/cpython3_3.13/build/cwltool/tests/test_target.py: 6 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_empty_input.py: 2 warnings
-.pybuild/cpython3_3.13/build/cwltool/tests/test_environment.py: 6 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_relocate.py: 4 warnings
-.pybuild/cpython3_3.13/build/cwltool/tests/test_iwdr.py: 6 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_environment.py: 6 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_tmpdir.py: 4 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_iwdr.py: 6 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_misc_cli.py: 14 warnings
-.pybuild/cpython3_3.13/build/cwltool/tests/test_singularity.py: 2 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_stdout_stderr_log_dir.py: 6 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_schemadef.py: 2 warnings
+.pybuild/cpython3_3.13/build/cwltool/tests/test_singularity.py: 2 warnings
.pybuild/cpython3_3.13/build/cwltool/tests/test_main_parsed_args.py: 2 warnings
/build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/cwltool/argparser.py:362: DeprecationWarning: Nesting argument groups is deprecated.
cidgroup = container_group.add_argument_group(
@@ -7272,12 +7307,12 @@
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
-SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the singularity executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1164: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1191: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1215: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_examples.py:1236: Requires the docker executable on the system path.
@@ -7289,31 +7324,31 @@
SKIPPED [9] cwltool/tests/test_override.py:76: Requires the docker executable on the system path.
SKIPPED [4] cwltool/tests/test_override.py:119: Requires the docker executable on the system path.
SKIPPED [11] cwltool/tests/test_toolargparse.py:207: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_cuda.py:25: nvidia-smi required for CUDA not detected
-SKIPPED [1] cwltool/tests/test_cuda.py:35: nvidia-smi required for CUDA not detected
-SKIPPED [1] cwltool/tests/test_cuda.py:46: nvidia-smi required for CUDA not detected
-SKIPPED [1] cwltool/tests/test_cuda.py:55: nvidia-smi required for CUDA not detected
SKIPPED [2] cwltool/tests/test_pack.py:187: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_parallel.py:11: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_parallel.py:24: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_path_checks.py:42: Requires the docker executable on the system path.
SKIPPED [7] cwltool/tests/test_path_checks.py:64: Requires the docker executable on the system path.
SKIPPED [7] cwltool/tests/test_path_checks.py:88: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_cuda.py:25: nvidia-smi required for CUDA not detected
+SKIPPED [1] cwltool/tests/test_cuda.py:35: nvidia-smi required for CUDA not detected
+SKIPPED [1] cwltool/tests/test_cuda.py:46: nvidia-smi required for CUDA not detected
+SKIPPED [1] cwltool/tests/test_cuda.py:55: nvidia-smi required for CUDA not detected
+SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_relocate.py:12: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_relocate.py:18: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed
SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed
SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed
SKIPPED [1] cwltool/tests/test_dependencies.py:116: modulecmd not installed
+SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_dependencies.py:140: modulecmd not installed
SKIPPED [1] cwltool/tests/test_docker.py:21: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_relocate.py:12: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_relocate.py:18: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_docker.py:57: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_docker.py:71: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_docker.py:85: Requires the docker executable on the system path.
@@ -7328,14 +7363,14 @@
SKIPPED [1] cwltool/tests/test_docker.py:244: Requires the singularity executable on the system path.
SKIPPED [1] cwltool/tests/test_docker.py:269: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_docker_info.py:4: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the docker executable on the system path.
+SKIPPED [1] cwltool/tests/test_tmpdir.py:229: Requires the singularity executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:199: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:199: Requires the singularity executable on the system path.
SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:219: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:219: Requires the singularity executable on the system path.
-SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the docker executable on the system path.
-SKIPPED [1] cwltool/tests/test_tmpdir.py:229: Requires the singularity executable on the system path.
SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_environment.py:245: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path.
@@ -7343,10 +7378,6 @@
SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path.
SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path.
-SKIPPED [1] cwltool/tests/test_singularity.py:84: Requires the singularity executable on the system path.
-SKIPPED [1] cwltool/tests/test_singularity.py:99: Requires the singularity executable on the system path.
-SKIPPED [1] cwltool/tests/test_singularity.py:115: Requires that version 2.6.x of singularity executable version is on the system path.
-SKIPPED [1] cwltool/tests/test_singularity.py:139: Requires that version 3.x of singularity executable version is on the system path.
SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path.
@@ -7362,14 +7393,18 @@
SKIPPED [1] cwltool/tests/test_ext.py:221: This test is non-deterministic
SKIPPED [1] cwltool/tests/test_ext.py:231: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_ext.py:238: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path.
+SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path.
SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path.
SKIPPED [1] cwltool/tests/test_singularity.py:20: Requires that version 2.6.x of singularity executable version is on the system path.
SKIPPED [1] cwltool/tests/test_singularity.py:45: Requires the singularity executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path.
-SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path.
-=============== 499 passed, 172 skipped, 422 warnings in 34.13s ================
+SKIPPED [1] cwltool/tests/test_singularity.py:84: Requires the singularity executable on the system path.
+SKIPPED [1] cwltool/tests/test_singularity.py:99: Requires the singularity executable on the system path.
+SKIPPED [1] cwltool/tests/test_singularity.py:115: Requires that version 2.6.x of singularity executable version is on the system path.
+SKIPPED [1] cwltool/tests/test_singularity.py:139: Requires that version 3.x of singularity executable version is on the system path.
+=============== 499 passed, 172 skipped, 422 warnings in 15.54s ================
I: pybuild pybuild:334: rm -Rf /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/tmp/ /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/main.cwl /build/reproducible-path/cwltool-3.1.20250110105449/.pybuild/cpython3_3.13/build/output.txt*
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
@@ -7661,12 +7696,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/1499161/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/1499161/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/1664560 and its subdirectories
-I: Current time: Sat Mar 7 20:13:33 -12 2026
-I: pbuilder-time-stamp: 1772957613
+I: removing directory /srv/workspace/pbuilder/1499161 and its subdirectories
+I: Current time: Mon Feb 3 15:54:20 +14 2025
+I: pbuilder-time-stamp: 1738547660