Diff of the two buildlogs: -- --- b1/build.log 2024-05-10 02:44:25.043786495 +0000 +++ b2/build.log 2024-05-10 02:48:18.329856008 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 9 14:38:56 -12 2024 -I: pbuilder-time-stamp: 1715308736 +I: Current time: Thu Jun 12 23:07:27 +14 2025 +I: pbuilder-time-stamp: 1749719247 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying disable_prov I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2875712/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1834932/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 12 09:07 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1834932/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1834932/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='4192d787ae8d4854b488014762a62e0f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2875712' - PS1='# ' - PS2='> ' + INVOCATION_ID=a566bb443d664473a3aa220f070ff2d0 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1834932 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z0TVwj7M/pbuilderrc_lvbj --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z0TVwj7M/b1 --logfile b1/build.log cwltool_3.1.20240404144621-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z0TVwj7M/pbuilderrc_ENpL --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z0TVwj7M/b2 --logfile b2/build.log cwltool_3.1.20240404144621-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 8 11:23 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2875712/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 9 17:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1834932/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -404,7 +436,7 @@ Get: 222 http://deb.debian.org/debian trixie/main arm64 python3-sphinx-rtd-theme all 2.0.0+dfsg-1 [28.3 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 python3-sphinxcontrib.autoprogram all 0.1.8-2 [10.6 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 python3-spython all 0.3.13-2 [55.2 kB] -Fetched 86.5 MB in 1s (95.8 MB/s) +Fetched 86.5 MB in 0s (182 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) @@ -1128,8 +1160,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri May 10 02:39:57 UTC 2024. -Universal Time is now: Fri May 10 02:39:57 UTC 2024. +Local time is now: Thu Jun 12 09:08:23 UTC 2025. +Universal Time is now: Thu Jun 12 09:08:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1347,7 +1379,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/cwltool-3.1.20240404144621/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cwltool_3.1.20240404144621-2_source.changes +I: user script /srv/workspace/pbuilder/1834932/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1834932/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/cwltool-3.1.20240404144621/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cwltool_3.1.20240404144621-2_source.changes dpkg-buildpackage: info: source package cwltool dpkg-buildpackage: info: source version 3.1.20240404144621-2 dpkg-buildpackage: info: source distribution unstable @@ -3251,7 +3287,7 @@ Copying cwltool.egg-info to build/bdist.linux-aarch64/wheel/cwltool-3.1.20240404144621.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cwltool-3.1.20240404144621.dist-info/WHEEL -creating '/build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.12/.tmp-u1y2ximd/cwltool-3.1.20240404144621-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.12/.tmp-kpnblcqv/cwltool-3.1.20240404144621-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cwltool/__init__.py' adding 'cwltool/__main__.py' adding 'cwltool/_version.py' @@ -5080,7 +5116,7 @@ Copying cwltool.egg-info to build/bdist.linux-aarch64/wheel/cwltool-3.1.20240404144621.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cwltool-3.1.20240404144621.dist-info/WHEEL -creating '/build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.11/.tmp-nffabxgp/cwltool-3.1.20240404144621-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.11/.tmp-mmu3036d/cwltool-3.1.20240404144621-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cwltool/__init__.py' adding 'cwltool/__main__.py' adding 'cwltool/_version.py' @@ -5950,21 +5986,21 @@ make[1]: Entering directory '/build/reproducible-path/cwltool-3.1.20240404144621' PYTHONPATH=/build/reproducible-path/cwltool-3.1.20240404144621/cwltool /usr/bin/make docs make[2]: Entering directory '/build/reproducible-path/cwltool-3.1.20240404144621' -/bin/sh: 1: git: not found -/bin/sh: 1: git: not found +/bin/sh: line 1: git: command not found +/bin/sh: line 1: git: command not found cd docs && /usr/bin/make html make[3]: Entering directory '/build/reproducible-path/cwltool-3.1.20240404144621/docs' Running Sphinx v7.2.6 [autosummary] generating autosummary for: CWLProv.rst, cli.rst, index.rst, loop.rst, processgen.rst, pythonversions.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://schema-salad.readthedocs.io/en/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://schema-salad.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='schema-salad.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://schema-salad.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='schema-salad.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://rdflib.readthedocs.io/en/6.2.0/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://rdflib.readthedocs.io/en/6.2.0/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdflib.readthedocs.io', port=443): Max retries exceeded with url: /en/6.2.0/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://rdflib.readthedocs.io/en/6.2.0/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdflib.readthedocs.io', port=443): Max retries exceeded with url: /en/6.2.0/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) [AutoAPI] Reading files... [ 2%] /build/reproducible-path/cwltool-3.1.20240404144621/cwltool/argparser.py [AutoAPI] Reading files... [ 4%] /build/reproducible-path/cwltool-3.1.20240404144621/cwltool/workflow_job.py [AutoAPI] Reading files... 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[100%] /build/reproducible-path/cwltool-3.1.20240404144621/cwltool/cwlprov/__init__.py WARNING: Cannot resolve import of cwltool.utils.files in cwltool.process WARNING: Cannot resolve import of cwltool.utils.files in cwltool.validate_js @@ -6053,7 +6089,7 @@ --ignore-glob "*test_http_input.py" \ -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' \ -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool" dh_auto_test -I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20240404144621; export PATH=/build/reproducible-path/cwltool-3.1.20240404144621/debian/cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games ; cd /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.12/build; export PYTHONPATH=/build/reproducible-path/cwltool-3.1.20240404144621; python3.12 -m pytest --ignore-glob *test_http_input.py -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool +I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20240404144621; export PATH=/build/reproducible-path/cwltool-3.1.20240404144621/debian/cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path ; cd /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.12/build; export PYTHONPATH=/build/reproducible-path/cwltool-3.1.20240404144621; python3.12 -m pytest --ignore-glob *test_http_input.py -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cwltool-3.1.20240404144621 @@ -6062,15 +6098,15 @@ created: 12/12 workers 12 workers [630 items] -s......s................................................................ [ 11%] -................................ss...................................... [ 22%] -...........................s.ss......sssss.............................. [ 34%] -..........................sssssssssssssssssss...ss.ssssssss.sssssss.sss.s [ 45%] -sssssssssssssss.....s..........................sssssssss............ssss [ 57%] -........ssssssssssssss.....s..........ss..........ss...s.........s.....s [ 68%] -ssss.sssssssssss....s.sssssssssssssss.sssss.s.....s.s..........s........ [ 80%] -...................sss...............s.s..s.......ssss..sssssssss....... [ 91%] -.....s......s.s...s.................................. [100%] +........ss......................s.s...................s....ss........... [ 11%] +........................................................................ [ 22%] +............................................ssss.s............ss.sssssss [ 34%] +sss.sssssss.....................................ssssss.ssssssssss..sss.s [ 45%] +ssssssssssssssss....s....................ssss.............sssssssss..... [ 57%] +.............sssss.ss.......ss..ssssssssssssss.....................ss.ss [ 68%] +ss....s..s..s.s...ssssssssssss.......s.............................s...s [ 80%] +ssssssssssssss.s....s...ss.s....................................s....sss [ 91%] +sssss.ss..s..sss..s...ss.............................. [100%] =============================== warnings summary =============================== cwltool/tests/test_dependencies.py:28: 12 warnings /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.12/build/cwltool/tests/test_dependencies.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @@ -6082,8 +6118,8 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ -SKIPPED [1] cwltool/tests/test_js_sandbox.py:94: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:216: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_js_sandbox.py:94: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:240: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:240: Requires the singularity executable on the system path. SKIPPED [3] cwltool/tests/test_check.py:12: Requires the docker executable on the system path. @@ -6099,17 +6135,26 @@ SKIPPED [4] cwltool/tests/test_examples.py:1215: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1236: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1261: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1284: Requires the docker executable on the system path. SKIPPED [9] cwltool/tests/test_override.py:77: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_override.py:120: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1284: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_cuda.py:25: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_cuda.py:35: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_cuda.py:46: nvidia-smi required for CUDA not detected SKIPPED [1] cwltool/tests/test_cuda.py:55: nvidia-smi required for CUDA not detected +SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed +SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed +SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed +SKIPPED [1] cwltool/tests/test_dependencies.py:116: modulecmd not installed +SKIPPED [1] cwltool/tests/test_dependencies.py:140: modulecmd not installed +SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_docker.py:21: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_relocate.py:17: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_relocate.py:23: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:57: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:71: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:85: Requires the docker executable on the system path. @@ -6124,18 +6169,18 @@ SKIPPED [1] cwltool/tests/test_docker.py:244: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:269: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker_info.py:4: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_relocate.py:17: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_relocate.py:23: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:196: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:196: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:216: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path. @@ -6151,36 +6196,27 @@ SKIPPED [1] cwltool/tests/test_ext.py:221: This test is non-deterministic SKIPPED [1] cwltool/tests/test_ext.py:231: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:238: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed -SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed -SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed -SKIPPED [1] cwltool/tests/test_dependencies.py:116: modulecmd not installed -SKIPPED [1] cwltool/tests/test_dependencies.py:140: modulecmd not installed -SKIPPED [1] cwltool/tests/test_docker.py:21: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_misc_cli.py:43: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:46: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_misc_cli.py:43: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:85: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:100: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:116: Requires that version 2.6.x of singularity executable version is on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:140: Requires that version 3.x of singularity executable version is on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:21: Requires that version 2.6.x of singularity executable version is on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:140: Requires that version 3.x of singularity executable version is on the system path. SKIPPED [1] cwltool/tests/test_js_sandbox.py:74: Requires the podman executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:85: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:100: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:116: Requires that version 2.6.x of singularity executable version is on the system path. SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the singularity executable on the system path. -================ 464 passed, 166 skipped, 13 warnings in 26.07s ================ +================ 464 passed, 166 skipped, 13 warnings in 20.25s ================ I: pybuild pybuild:334: rm -Rf /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.12/build/tmp/ /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.12/build/main.cwl /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.12/build/output.txt* -I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20240404144621; export PATH=/build/reproducible-path/cwltool-3.1.20240404144621/debian/cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games ; cd /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.11/build; export PYTHONPATH=/build/reproducible-path/cwltool-3.1.20240404144621; python3.11 -m pytest --ignore-glob *test_http_input.py -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool +I: pybuild base:311: cd /build/reproducible-path/cwltool-3.1.20240404144621; export PATH=/build/reproducible-path/cwltool-3.1.20240404144621/debian/cwltool/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path ; cd /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.11/build; export PYTHONPATH=/build/reproducible-path/cwltool-3.1.20240404144621; python3.11 -m pytest --ignore-glob *test_http_input.py -k 'not (test_http_path_mapping or test_get_subgraph or test_udocker_usage_should_not_write_cid_file or test_udocker_should_display_memory_usage or test_content_types or test_get_step or test_udocker_nobanner)' -n auto --ignore cwltool/schemas/ -rs --pyargs cwltool ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/cwltool-3.1.20240404144621 @@ -6189,15 +6225,15 @@ created: 12/12 workers 12 workers [630 items] -.....ss................................................................. [ 11%] -...........ss...s......................ss............................... [ 22%] -.......................................sss.ss............sssssssssssss.. [ 34%] -................ssssss..ss...ssss.....sssssss..........sss....sssssssss. [ 45%] -...ssssss...sssss..s....................ssssssssssssss...ssss........... [ 57%] -...........sssssssss....ss...s.........s.....ssssss.........ss.ssss.s... [ 68%] -.............s.....s.......sss..ssssss.ssssssssssss..sssss.s.....s...s.. [ 80%] -...........sss......................ss.....s...ssssssssss...s.......s.ss [ 91%] -s.................s.........s......................... [100%] +.s.........s...................................ss....................... [ 11%] +..............................sss....................................... [ 22%] +..................................sssss................................. [ 34%] +.........................sssssssssssssssssss.sssssssssssssssssssssss.... [ 45%] +...sssssssssssss.....s.......................ssssssssssssss......ssss... [ 57%] +............sssssssss.......ss.ss......s.s..................s.ssssss.... [ 68%] +....s..s...ssssssssssss..s.ssss.s.sssssssssssssss....................... [ 80%] +.........sss..........s....s..........................sssss..sss.....sss [ 91%] +s............s.........ss.s.ss........................ [100%] =============================== warnings summary =============================== cwltool/tests/test_dependencies.py:28: 12 warnings /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.11/build/cwltool/tests/test_dependencies.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @@ -6211,12 +6247,10 @@ =========================== short test summary info ============================ SKIPPED [1] cwltool/tests/test_js_sandbox.py:94: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:216: Requires the singularity executable on the system path. -SKIPPED [3] cwltool/tests/test_check.py:12: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:240: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:240: Requires the singularity executable on the system path. +SKIPPED [3] cwltool/tests/test_check.py:12: Requires the docker executable on the system path. SKIPPED [6] cwltool/tests/test_toolargparse.py:126: Requires the docker executable on the system path. -SKIPPED [9] cwltool/tests/test_override.py:77: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_override.py:120: Requires the docker executable on the system path. SKIPPED [2] cwltool/tests/test_pack.py:188: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_parallel.py:11: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_parallel.py:24: Requires the docker executable on the system path. @@ -6229,6 +6263,8 @@ SKIPPED [4] cwltool/tests/test_examples.py:1236: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1261: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1284: Requires the docker executable on the system path. +SKIPPED [9] cwltool/tests/test_override.py:77: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_override.py:120: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_examples.py:1379: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:57: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_docker.py:71: Requires the docker executable on the system path. @@ -6251,25 +6287,27 @@ SKIPPED [1] cwltool/tests/test_examples.py:1446: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1461: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1483: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_relocate.py:17: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_relocate.py:23: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:196: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:196: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_subgraph.py:221: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_environment.py:216: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_dependencies.py:26: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:47: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:110: galaxy-tool-util is not installed SKIPPED [1] cwltool/tests/test_dependencies.py:116: modulecmd not installed SKIPPED [1] cwltool/tests/test_dependencies.py:140: modulecmd not installed SKIPPED [1] cwltool/tests/test_docker.py:21: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_relocate.py:17: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_relocate.py:23: Requires the docker executable on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:24: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:48: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_examples.py:900: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1103: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1118: Requires the docker executable on the system path. SKIPPED [4] cwltool/tests/test_examples.py:1139: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1516: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:14: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:23: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:33: Requires the docker executable on the system path. @@ -6285,27 +6323,25 @@ SKIPPED [1] cwltool/tests/test_ext.py:221: This test is non-deterministic SKIPPED [1] cwltool/tests/test_ext.py:231: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_ext.py:238: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_subgraph.py:288: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_iwdr.py:81: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:190: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:251: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_iwdr.py:315: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:21: Requires that version 2.6.x of singularity executable version is on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:46: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_misc_cli.py:43: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_subgraph.py:324: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:85: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_singularity.py:100: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_js_sandbox.py:74: Requires the podman executable on the system path. +SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:116: Requires that version 2.6.x of singularity executable version is on the system path. -SKIPPED [1] cwltool/tests/test_misc_cli.py:43: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_singularity.py:140: Requires that version 3.x of singularity executable version is on the system path. -SKIPPED [4] cwltool/tests/test_examples.py:1086: Requires the docker executable on the system path. -SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the singularity executable on the system path. -SKIPPED [1] cwltool/tests/test_js_sandbox.py:74: Requires the podman executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:60: Requires the docker executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:81: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_secrets.py:102: Requires the docker executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:21: Requires that version 2.6.x of singularity executable version is on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:46: Requires the singularity executable on the system path. SKIPPED [1] cwltool/tests/test_tmpdir.py:116: Requires the docker executable on the system path. -================ 464 passed, 166 skipped, 13 warnings in 28.74s ================ +SKIPPED [1] cwltool/tests/test_tmpdir.py:171: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:85: Requires the singularity executable on the system path. +SKIPPED [1] cwltool/tests/test_singularity.py:100: Requires the singularity executable on the system path. +================ 464 passed, 166 skipped, 13 warnings in 20.91s ================ I: pybuild pybuild:334: rm -Rf /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.11/build/tmp/ /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.11/build/main.cwl /build/reproducible-path/cwltool-3.1.20240404144621/.pybuild/cpython3_3.11/build/output.txt* find .pybuild -name "out" -type f -delete make[1]: Leaving directory '/build/reproducible-path/cwltool-3.1.20240404144621' @@ -6557,12 +6593,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1834932/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1834932/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2875712 and its subdirectories -I: Current time: Thu May 9 14:44:23 -12 2024 -I: pbuilder-time-stamp: 1715309063 +I: removing directory /srv/workspace/pbuilder/1834932 and its subdirectories +I: Current time: Thu Jun 12 23:11:16 +14 2025 +I: pbuilder-time-stamp: 1749719476