Diff of the two buildlogs: -- --- b1/build.log 2024-05-03 22:49:16.260391136 +0000 +++ b2/build.log 2024-05-03 22:50:28.189331856 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 5 17:09:17 -12 2025 -I: pbuilder-time-stamp: 1749186557 +I: Current time: Sat May 4 12:49:19 +14 2024 +I: pbuilder-time-stamp: 1714776559 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying skip_tests_touching_security_sensitive_fields.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2631548/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2013406/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 3 22:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2013406/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2013406/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='03823e72711043f49a0e874c3d47cda7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2631548' - PS1='# ' - PS2='> ' + INVOCATION_ID=1d8fb0a966e54c13b5fc7d86f09c3f8c + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2013406 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PQjAXwRR/pbuilderrc_O8DB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PQjAXwRR/b1 --logfile b1/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PQjAXwRR/pbuilderrc_AqPo --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PQjAXwRR/b2 --logfile b2/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 5 14:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2631548/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 3 08:22 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2013406/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -293,7 +325,7 @@ Get: 161 http://deb.debian.org/debian trixie/main arm64 libjacoco-java all 0.8.12-1 [647 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libjimfs-java all 1.1-6 [191 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libtruth-java all 0.39-1 [164 kB] -Fetched 216 MB in 2s (92.1 MB/s) +Fetched 216 MB in 1s (225 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19736 files and directories currently installed.) @@ -1154,7 +1186,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/2013406/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2013406/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package capsule-nextflow dpkg-buildpackage: info: source version 1.1.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1185,18 +1221,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.642 secs. -The client will now receive all logging from the daemon (pid: 2652732). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-2652732.out.log +An attempt to start the daemon took 0.951 secs. +The client will now receive all logging from the daemon (pid: 2025495). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-2025495.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3fe96979 -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3fe96979 -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@aa6c2a5 +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3c5b410 +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3c5b410 +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@208aaa1a Starting Build Compiling initialization script '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@181ec2b8 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@722a7b8c Compiling initialization script '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1219,93 +1255,93 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@61f5b103 +Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@515f12f3 Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@aa6c2a5 -Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@7086761c -Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7a9ede36 -:capsule:compileJava (Thread[Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@208aaa1a +Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@44a86acf +Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@32786ba3 +:capsule:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:compileJava -:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.131 secs. -Putting task artifact state for task ':capsule:compileJava' into context took 0.135 secs. -Up-to-date check for task ':capsule:compileJava' took 0.056 secs. It is not up-to-date because: +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.012 secs. +Putting task artifact state for task ':capsule:compileJava' into context took 0.013 secs. +Up-to-date check for task ':capsule:compileJava' took 0.027 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileJava'. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. -Up-to-date check for task ':capsule-util:compileJava' took 0.188 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileJava' took 0.061 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileJava'. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. -Note: Some input files use or override a deprecated API. -Note: Recompile with -Xlint:deprecation for details. -Note: Some input files use unchecked or unsafe operations. -Note: Recompile with -Xlint:unchecked for details. /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java:5712: warning: [removal] SecurityManager in java.lang has been deprecated and marked for removal final SecurityManager security = System.getSecurityManager(); ^ /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java:5712: warning: [removal] getSecurityManager() in System has been deprecated and marked for removal final SecurityManager security = System.getSecurityManager(); ^ -:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 5.512 secs. -:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. +Note: Some input files use or override a deprecated API. +Note: Recompile with -Xlint:deprecation for details. +Note: Some input files use unchecked or unsafe operations. +Note: Recompile with -Xlint:unchecked for details. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 2.131 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:processResources' took 0.011 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:processResources' took 0.004 secs. It is not up-to-date because: No history is available. -:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.066 secs. -:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) started. -:capsule-util:classes +:capsule-util:processResources (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.03 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 11,5,main]) started. +:capsule-util:classesNote: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. +Note: Recompile with -Xlint:unchecked for details. + Skipping task ':capsule-util:classes' as it has no actions. -:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.001 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. +2 warnings +:capsule-util:classes (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.001 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. +:capsule:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 2.175 secs. Up-to-date check for task ':capsule-util:debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. - Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.252 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) started. -:capsule-util:jar -Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:jar' took 0.036 secs. It is not up-to-date because: - No history is available. -Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. -Note: Recompile with -Xlint:unchecked for details. -2 warnings -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 5.943 secs. -:capsule:processResources (Thread[Task worker for ':',5,main]) started. +:capsule:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.06 secs. -:capsule:classes (Thread[Task worker for ':',5,main]) started. +:capsule:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. +:capsule:classes (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. +:capsule:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:capsule:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule:debianMavenPom' took 0.002 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. + Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.029 secs. -:capsule:jar (Thread[Task worker for ':',5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.087 secs. +:capsule:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.078 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 11,5,main]) started. +:capsule-util:jar +Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. +:capsule:jar (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule:jar' took 0.013 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:jar' took 0.007 secs. It is not up-to-date because: No history is available. -:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.081 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.322 secs. +Up-to-date check for task ':capsule:jar' took 0.005 secs. It is not up-to-date because: + No history is available. +:capsule:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.051 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.061 secs. -BUILD SUCCESSFUL in 20s +BUILD SUCCESSFUL in 8s 7 actionable tasks: 7 executed dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d @@ -1318,17 +1354,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.306 secs. -The client will now receive all logging from the daemon (pid: 2655107). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-2655107.out.log +An attempt to start the daemon took 0.948 secs. +The client will now receive all logging from the daemon (pid: 2026168). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-2026168.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7185f535 -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7185f535 -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@218e4770 +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5c49530b +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5c49530b +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f697d8b Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@4fa4c502 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@366ef3ef Settings evaluated using settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/build.gradle'. Included projects: [root project 'capsule', project ':capsule', project ':capsule-util'] @@ -1346,84 +1382,84 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@2696dc35 +Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@18a48960 Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar', task ':capsule:compileTestJava', task ':capsule:processTestResources', task ':capsule:testClasses', task ':capsule:test', task ':capsule-util:compileTestJava', task ':capsule-util:processTestResources', task ':capsule-util:testClasses', task ':capsule-util:test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@218e4770 -Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@20472615 -Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@72def91b -:capsule:compileJava (Thread[Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f697d8b +Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3ec1f00e +Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@289241c7 +:capsule:compileJava (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule:compileJava -:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.015 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.005 secs. -Skipping task ':capsule:compileJava' as it is up-to-date (took 0.074 secs). +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.011 secs. +Putting task artifact state for task ':capsule:compileJava' into context took 0.011 secs. +Skipping task ':capsule:compileJava' as it is up-to-date (took 0.054 secs). :capsule:compileJava UP-TO-DATE -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.134 secs. -:capsule:processResources (Thread[Task worker for ':',5,main]) started. +:capsule:compileJava (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.119 secs. +:capsule:processResources (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.007 secs. -:capsule:classes (Thread[Task worker for ':',5,main]) started. +:capsule:processResources (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.006 secs. +:capsule:classes (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. :capsule:classes UP-TO-DATE -:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.005 secs. -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. +:capsule:classes (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.002 secs. +:capsule:debianMavenPom (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.014 secs). +Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.004 secs). :capsule:debianMavenPom UP-TO-DATE -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.016 secs. -:capsule:jar (Thread[Task worker for ':',5,main]) started. +:capsule:debianMavenPom (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.009 secs. +:capsule:jar (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Skipping task ':capsule:jar' as it is up-to-date (took 0.031 secs). +Skipping task ':capsule:jar' as it is up-to-date (took 0.006 secs). :capsule:jar UP-TO-DATE -:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.04 secs. -:capsule:processTestResources (Thread[Task worker for ':',5,main]) started. +:capsule:jar (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.011 secs. +:capsule:processTestResources (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule:processTestResources Putting task artifact state for task ':capsule:processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/resources', not found Skipping task ':capsule:processTestResources' as it has no source files and no previous output files. :capsule:processTestResources NO-SOURCE -:capsule:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.004 secs. -Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.493 secs). +:capsule:processTestResources (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. +Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.127 secs). :capsule-util:compileJava UP-TO-DATE -:capsule-util:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.55 secs. -:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.185 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.009 secs). +Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.01 secs). :capsule-util:processResources UP-TO-DATE -:capsule-util:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.012 secs. -:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:processResources (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.016 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. :capsule-util:classes UP-TO-DATE -:capsule-util:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:classes (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.001 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.004 secs). +Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.003 secs). :capsule-util:debianMavenPom UP-TO-DATE -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.005 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.007 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Skipping task ':capsule-util:jar' as it is up-to-date (took 0.004 secs). +Skipping task ':capsule-util:jar' as it is up-to-date (took 0.007 secs). :capsule-util:jar UP-TO-DATE -:capsule-util:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.012 secs. -:capsule:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule-util:jar (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.012 secs. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule:compileTestJava Putting task artifact state for task ':capsule:compileTestJava' into context took 0.0 secs. -:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 9,5,main]) started. +:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:compileTestJava Putting task artifact state for task ':capsule-util:compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@296d4d6c +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@2c7f94a6 Loading the Maven rules... Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x @@ -1432,9 +1468,8 @@ Passing through com.google.truth:truth-parent:jar:debian Passing through com.google.truth:truth-parent:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian - Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian - Passing through com.google.jimfs:jimfs-parent:jar:debian Passing through com.google.jimfs:jimfs-parent:jar:debian + Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Ignoring org.jooq:joor:jar:0.9.6 Ignoring org.jooq:joor:jar:0.9.6 Passing through org.hamcrest:hamcrest:jar:debian @@ -1445,57 +1480,57 @@ Passing through org.jsr-305:jsr305:jar:0.x Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian - Passing through com.google.errorprone:error_prone_parent:jar:debian Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian -Up-to-date check for task ':capsule-util:compileTestJava' took 2.28 secs. It is not up-to-date because: + Passing through com.google.errorprone:error_prone_parent:jar:debian +Up-to-date check for task ':capsule-util:compileTestJava' took 1.127 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule:compileTestJava' took 2.275 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:compileTestJava' took 1.13 secs. It is not up-to-date because: No history is available. -All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. All input files are considered out-of-date for incremental task ':capsule:compileTestJava'. +All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. Use of target 1.7 is no longer supported, switching to 8 -Use of source 1.7 is no longer supported, switching to 8 Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 +Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. Compiling with JDK Java compiler API. -:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 9,5,main]) completed. Took 5.247 secs. -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 9,5,main]) started. +:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 2.456 secs. +:capsule-util:processTestResources (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:processTestResources Putting task artifact state for task ':capsule-util:processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/src/test/resources', not found Skipping task ':capsule-util:processTestResources' as it has no source files and no previous output files. :capsule-util:processTestResources NO-SOURCE -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 9,5,main]) completed. Took 0.027 secs. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 9,5,main]) started. +:capsule-util:processTestResources (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. +:capsule-util:testClasses (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:testClasses Skipping task ':capsule-util:testClasses' as it has no actions. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 9,5,main]) completed. Took 0.022 secs. -:capsule-util:test (Thread[Task worker for ':' Thread 9,5,main]) started. +:capsule-util:testClasses (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.0 secs. +:capsule-util:test (Thread[Task worker for ':' Thread 4,5,main]) started. :capsule-util:test Putting task artifact state for task ':capsule-util:test' into context took 0.0 secs. Replacing org.jacoco:org.jacoco.agent:jar:0.7.9 -> org.jacoco:org.jacoco.agent:jar:debian Passing through org.jacoco:org.jacoco.build:jar:debian -Up-to-date check for task ':capsule-util:test' took 0.371 secs. It is not up-to-date because: - No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath1623171016691735364txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 1' Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/TestCapsule.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/MyCapsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:capsule:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 6.632 secs. -:capsule:testClasses (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 2.741 secs. +:capsule:testClasses (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule:testClasses Skipping task ':capsule:testClasses' as it has no actions. -:capsule:testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:capsule:test (Thread[Task worker for ':' Thread 2,5,main]) started. +:capsule:testClasses (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.0 secs. +:capsule:test (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule:test Putting task artifact state for task ':capsule:test' into context took 0.0 secs. -Up-to-date check for task ':capsule:test' took 0.034 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:test' took 0.275 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath14853889793581685717txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Up-to-date check for task ':capsule:test' took 0.103 secs. It is not up-to-date because: + No history is available. +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath8511516131606572344txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath17815255796441414292txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Successfully started process 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 2' Gradle Test Executor 1 started executing tests. Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) @@ -1503,16 +1538,17 @@ Running test: Test testExtendClasspath(NextflowLoaderTest) Running test: Test testExtendDeps(NextflowLoaderTest) Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) -Running test: Test testAddZip2(co.paralleluniverse.capsule.JarTest) CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED -Running test: Test testAddZip3(co.paralleluniverse.capsule.JarTest) -Running test: Test testAddZip4(co.paralleluniverse.capsule.JarTest) -Running test: Test testUpdateJar(co.paralleluniverse.capsule.JarTest) Running test: Test testEmbeddedCaplet(CapsuleTest) +Gradle Test Executor 2 finished executing tests. CapsuleTest > testEmbeddedCaplet SKIPPED Running test: Test testCapsuleJavaHome(CapsuleTest) +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release CapsuleTest > testCapsuleJavaHome SKIPPED Running test: Test testLogLevel(CapsuleTest) @@ -1528,8 +1564,6 @@ CapsuleTest > testNatives1 SKIPPED Running test: Test testNatives2(CapsuleTest) -Running test: Test testUpdateJar2(co.paralleluniverse.capsule.JarTest) -Running test: Test testUpdateJar3(co.paralleluniverse.capsule.JarTest) CapsuleTest > testNatives2 SKIPPED Running test: Test testBootClassPathWithEmbeddedDeps(CapsuleTest) @@ -1583,12 +1617,6 @@ Running test: Test testBootClassPathWithDeps(CapsuleTest) CapsuleTest > testBootClassPathWithDeps SKIPPED -Running test: Test testReallyExecutableJar(co.paralleluniverse.capsule.JarTest) -Running test: Test testAddPackage2(co.paralleluniverse.capsule.JarTest) -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release Running test: Test testCapsuleInClassPath(CapsuleTest) CapsuleTest > testCapsuleInClassPath SKIPPED @@ -1606,7 +1634,6 @@ CapsuleTest > testReallyExecutableCapsule SKIPPED Running test: Test testCapsuleJvmArgsParsing(CapsuleTest) -Gradle Test Executor 2 finished executing tests. CapsuleTest > testCapsuleJvmArgsParsing SKIPPED Running test: Test testParseAttribute(CapsuleTest) @@ -1644,29 +1671,37 @@ Running test: Test testApplicationArtifact(CapsuleTest) CapsuleTest > testApplicationArtifact SKIPPED -Running test: Test testAddPackage(co.paralleluniverse.capsule.JarTest) -Finished generating test XML results (0.032 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test +Finished generating test XML results (0.011 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test Generating HTML test report... +Finished generating test html results (0.024 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test +Running test: Test testAddZip2(co.paralleluniverse.capsule.JarTest) +Running test: Test testAddZip3(co.paralleluniverse.capsule.JarTest) +Running test: Test testAddZip4(co.paralleluniverse.capsule.JarTest) +Running test: Test testUpdateJar(co.paralleluniverse.capsule.JarTest) +Running test: Test testUpdateJar2(co.paralleluniverse.capsule.JarTest) +Running test: Test testUpdateJar3(co.paralleluniverse.capsule.JarTest) +:capsule:test (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 1.632 secs. +Running test: Test testReallyExecutableJar(co.paralleluniverse.capsule.JarTest) +Running test: Test testAddPackage2(co.paralleluniverse.capsule.JarTest) +Running test: Test testAddPackage(co.paralleluniverse.capsule.JarTest) Running test: Test testFilePrefix(co.paralleluniverse.capsule.JarTest) Running test: Test testStringPrefix(co.paralleluniverse.capsule.JarTest) Running test: Test testCreateJar(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory1(co.paralleluniverse.capsule.JarTest) -Finished generating test html results (0.057 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test Running test: Test testAddDirectory2(co.paralleluniverse.capsule.JarTest) -:capsule:test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 4.292 secs. Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) +Gradle Test Executor 1 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 1 finished executing tests. -Finished generating test XML results (0.001 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test +Finished generating test XML results (0.002 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test Generating HTML test report... -Finished generating test html results (0.024 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test -:capsule-util:test (Thread[Task worker for ':' Thread 9,5,main]) completed. Took 6.036 secs. +Finished generating test html results (0.005 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test +:capsule-util:test (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 2.161 secs. -BUILD SUCCESSFUL in 25s +BUILD SUCCESSFUL in 10s 11 actionable tasks: 4 executed, 7 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -1698,12 +1733,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2013406/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2013406/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2631548 and its subdirectories -I: Current time: Thu Jun 5 17:12:14 -12 2025 -I: pbuilder-time-stamp: 1749186734 +I: removing directory /srv/workspace/pbuilder/2013406 and its subdirectories +I: Current time: Sat May 4 12:50:27 +14 2024 +I: pbuilder-time-stamp: 1714776627