Diff of the two buildlogs: -- --- b1/build.log 2024-05-07 17:35:36.924959586 +0000 +++ b2/build.log 2024-05-07 17:39:53.802026556 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 9 11:57:41 -12 2025 -I: pbuilder-time-stamp: 1749513461 +I: Current time: Tue Jun 10 13:58:40 +14 2025 +I: pbuilder-time-stamp: 1749513520 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2230421/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3628788/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 9 23:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3628788/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3628788/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='350ad8f2b4ce4d188f8563c2cf6f39e5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2230421' - PS1='# ' - PS2='> ' + INVOCATION_ID=85e97d22c61e40b39fee8d51102cf6f3 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3628788 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XQAGj21I/pbuilderrc_bUO1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XQAGj21I/b1 --logfile b1/build.log bamtools_2.5.2+dfsg-5.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XQAGj21I/pbuilderrc_pMV4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XQAGj21I/b2 --logfile b2/build.log bamtools_2.5.2+dfsg-5.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 9 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2230421/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 7 17:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3628788/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 69 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-1+b2 [26.2 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-1+b2 [14.0 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] -Fetched 83.3 MB in 0s (253 MB/s) +Fetched 83.3 MB in 1s (57.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19743 files and directories currently installed.) @@ -495,7 +527,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bamtools-2.5.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bamtools_2.5.2+dfsg-5_source.changes +I: user script /srv/workspace/pbuilder/3628788/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3628788/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bamtools-2.5.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bamtools_2.5.2+dfsg-5_source.changes dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.2+dfsg-5 dpkg-buildpackage: info: source distribution unstable @@ -539,7 +575,7 @@ -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success --- Configuring done (1.4s) +-- Configuring done (4.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -855,41 +891,41 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/depend -make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/depend make[3]: Entering directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bamtools-2.5.2+dfsg /build/reproducible-path/bamtools-2.5.2+dfsg/src /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/BamTools.dir/DependInfo.cmake "--color=" +make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/depend make[3]: Entering directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bamtools-2.5.2+dfsg /build/reproducible-path/bamtools-2.5.2+dfsg/src /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/BamTools_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' -make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/build -make[3]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' +make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/build make[3]: Entering directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' -[ 1%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -[ 2%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o -[ 4%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -[ 3%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -[ 5%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamReader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamReader.cpp -[ 6%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o +[ 1%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o +[ 2%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamAlignment.cpp -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamReader.cpp -[ 7%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -[ 8%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -[ 9%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamAlignment.cpp -[ 10%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp +[ 3%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o +[ 4%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamAlignment.cpp +[ 5%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamReader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamReader.cpp +[ 6%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamWriter.cpp +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp +[ 8%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o +[ 7%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamReader.cpp cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamWriter.cpp -[ 11%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o +[ 9%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o +[ 10%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamHeader.cpp cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamHeader.cpp -[ 12%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o +[ 11%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o +[ 12%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamProgram.cpp -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamWriter.cpp -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamProgramChain.cpp -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamReadGroup.cpp +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamProgram.cpp In file included from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:16: @@ -909,16 +945,8 @@ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ -[ 13%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamReadGroupDictionary.cpp -[ 14%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamSequence.cpp -[ 15%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamHeader.cpp -[ 16%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamSequenceDictionary.cpp -[ 17%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamProgram.cpp +[ 13%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamProgramChain.cpp In file included from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:16: @@ -938,22 +966,40 @@ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ -[ 18%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o +[ 14%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamProgramChain.cpp +[ 15%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -c 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src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamReadGroupDictionary.cpp +[ 18%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o +cd 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamWriter_p.cpp -[ 24%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time 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src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/index/BamIndexFactory_p.cpp +[ 30%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamReader_p.cpp In file included from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp:10: @@ -968,40 +1014,6 @@ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ -/build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function - | ^~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ -[ 26%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamReadGroupDictionary.cpp -[ 27%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamSequence.cpp -[ 28%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp -[ 29%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp -[ 30%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/SamSequenceDictionary.cpp -[ 31%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamHeader_p.cpp -[ 32%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp -[ 33%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp -[ 34%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/BamFile_p.cpp -[ 35%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/BamFtp_p.cpp -[ 36%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/BamHttp_p.cpp -[ 37%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/BamPipe_p.cpp -[ 38%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/BgzfStream_p.cpp -[ 39%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/ByteArray_p.cpp In file included from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp:10: @@ -1022,90 +1034,114 @@ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ -[ 40%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/HostAddress_p.cpp -[ 41%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp -[ 42%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/HostInfo_p.cpp -[ 43%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -cd 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+/build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function + | ^~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ +[ 31%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -[ 72%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o +[ 64%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT 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CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp -/usr/bin/ranlib libbamtools.a -make[3]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' -[ 72%] Built target BamTools_static -[ 73%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o +[ 67%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o [ 79%] Linking CXX shared library libbamtools.so cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g 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CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -lz +/usr/bin/ranlib libbamtools.a +make[3]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' +[ 79%] Built target BamTools_static cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.2 libbamtools.so.2.5.2 libbamtools.so make[3]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target BamTools @@ -1115,14 +1151,14 @@ make[3]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/BamTools-utils.dir/build.make src/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' -[ 80%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o +[ 80%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o +[ 81%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/utils/bamtools_utilities.cpp -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/utils/bamtools_options.cpp /build/reproducible-path/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp: In member function 'bool BamTools::Fasta::FastaPrivate::CreateIndex(const std::string&)': /build/reproducible-path/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:161:15: warning: comparison is always true due to limited range of data type [-Wtype-limits] 161 | while ((c >= 0) && (c != '\n')) { @@ -1140,29 +1176,29 @@ make[3]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bamtools_cmd.dir/build.make src/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' -[ 85%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -[ 86%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -[ 88%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -[ 89%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -[ 90%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -[ 91%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -[ 92%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o +[ 85%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g 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-g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.cpp +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_filter.cpp -[ 93%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o +[ 90%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_header.cpp +[ 91%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o +[ 92%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_index.cpp cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_merge.cpp -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_random.cpp -cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools.cpp +[ 93%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o [ 94%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o +cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_random.cpp cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_resolve.cpp [ 95%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -[ 96%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_revert.cpp +[ 96%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o cd /build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/build/reproducible-path/bamtools-2.5.2+dfsg/src -I/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bamtools-2.5.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -c /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.cpp In file included from /build/reproducible-path/bamtools-2.5.2+dfsg/src/api/BamAlgorithms.h:15, from /build/reproducible-path/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.cpp:12: @@ -1250,7 +1286,7 @@ 1: 1: See 'bamtools help COMMAND' for more information on a specific command. 1: -1/2 Test #1: bamtools_help .................... Passed 0.01 sec +1/2 Test #1: bamtools_help .................... Passed 0.06 sec 2: 2: ********************************************** 2: Stats for BAM file(s): @@ -1269,11 +1305,11 @@ 2: Read 2: 1 2: Singletons: 0 (0%) 2: -2/2 Test #2: bamtools_stats ................... Passed 0.01 sec +2/2 Test #2: bamtools_stats ................... Passed 0.04 sec 100% tests passed, 0 tests failed out of 2 -Total Test time (real) = 0.01 sec +Total Test time (real) = 0.08 sec make[2]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/bamtools-2.5.2+dfsg' create-stamp debian/debhelper-build-stamp @@ -1365,12 +1401,12 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'bamtools' in '../bamtools_2.5.2+dfsg-5_arm64.deb'. -dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.2+dfsg-5_arm64.deb'. -dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.2+dfsg-5_arm64.deb'. dpkg-deb: building package 'libbamtools2.5.2' in '../libbamtools2.5.2_2.5.2+dfsg-5_arm64.deb'. +dpkg-deb: building package 'bamtools' in '../bamtools_2.5.2+dfsg-5_arm64.deb'. dpkg-deb: building package 'libbamtools2.5.2-dbgsym' in '../libbamtools2.5.2-dbgsym_2.5.2+dfsg-5_arm64.deb'. +dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.2+dfsg-5_arm64.deb'. dpkg-deb: building package 'libbamtools-doc' in '../libbamtools-doc_2.5.2+dfsg-5_all.deb'. +dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.2+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../bamtools_2.5.2+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../bamtools_2.5.2+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1378,12 +1414,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3628788/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3628788/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2230421 and its subdirectories -I: Current time: Mon Jun 9 11:58:35 -12 2025 -I: pbuilder-time-stamp: 1749513515 +I: removing directory /srv/workspace/pbuilder/3628788 and its subdirectories +I: Current time: Tue Jun 10 14:02:52 +14 2025 +I: pbuilder-time-stamp: 1749513772